data_5E6H # _model_server_result.job_id I_60P9a6IV-YavtiN6NRIg _model_server_result.datetime_utc '2024-11-07 05:34:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 5E6H # _exptl.entry_id 5E6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.55 _cell.angle_gamma 90 _cell.entry_id 5E6H _cell.length_a 115.365 _cell.length_b 61.591 _cell.length_c 46.583 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc4 B MN MN . A MN 601 1_555 C O1 AKG . A AKG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc5 B MN MN . A MN 601 1_555 C O5 AKG . A AKG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 B MN MN . A MN 601 1_555 F O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 144 n n C1 C2 GOL sing 145 n n C1 H11 GOL sing 146 n n C1 H12 GOL sing 147 n n O1 HO1 GOL sing 148 n n C2 O2 GOL sing 149 n n C2 C3 GOL sing 150 n n C2 H2 GOL sing 151 n n O2 HO2 GOL sing 152 n n C3 O3 GOL sing 153 n n C3 H31 GOL sing 154 n n C3 H32 GOL sing 155 n n O3 HO3 GOL sing 156 n n # _atom_sites.entry_id 5E6H _atom_sites.fract_transf_matrix[1][1] 0.008668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000386 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 601 1 MN MN . C 3 AKG A 1 602 2 AKG AKG . D 4 GOL A 1 603 2 GOL GOL . E 4 GOL A 1 604 4 GOL GOL . F 5 HOH A 1 701 32 HOH HOH . F 5 HOH A 2 702 72 HOH HOH . F 5 HOH A 3 703 12 HOH HOH . F 5 HOH A 4 704 88 HOH HOH . F 5 HOH A 5 705 92 HOH HOH . F 5 HOH A 6 706 84 HOH HOH . F 5 HOH A 7 707 30 HOH HOH . F 5 HOH A 8 708 150 HOH HOH . F 5 HOH A 9 709 68 HOH HOH . F 5 HOH A 10 710 55 HOH HOH . F 5 HOH A 11 711 11 HOH HOH . F 5 HOH A 12 712 8 HOH HOH . F 5 HOH A 13 713 59 HOH HOH . F 5 HOH A 14 714 79 HOH HOH . F 5 HOH A 15 715 3 HOH HOH . F 5 HOH A 16 716 80 HOH HOH . F 5 HOH A 17 717 52 HOH HOH . F 5 HOH A 18 718 152 HOH HOH . F 5 HOH A 19 719 45 HOH HOH . F 5 HOH A 20 720 156 HOH HOH . F 5 HOH A 21 721 27 HOH HOH . F 5 HOH A 22 722 154 HOH HOH . F 5 HOH A 23 723 108 HOH HOH . F 5 HOH A 24 724 19 HOH HOH . F 5 HOH A 25 725 9 HOH HOH . F 5 HOH A 26 726 70 HOH HOH . F 5 HOH A 27 727 56 HOH HOH . F 5 HOH A 28 728 29 HOH HOH . F 5 HOH A 29 729 165 HOH HOH . F 5 HOH A 30 730 17 HOH HOH . F 5 HOH A 31 731 6 HOH HOH . F 5 HOH A 32 732 63 HOH HOH . F 5 HOH A 33 733 61 HOH HOH . F 5 HOH A 34 734 18 HOH HOH . F 5 HOH A 35 735 38 HOH HOH . F 5 HOH A 36 736 34 HOH HOH . F 5 HOH A 37 737 2 HOH HOH . F 5 HOH A 38 738 65 HOH HOH . F 5 HOH A 39 739 54 HOH HOH . F 5 HOH A 40 740 164 HOH HOH . F 5 HOH A 41 741 16 HOH HOH . F 5 HOH A 42 742 51 HOH HOH . F 5 HOH A 43 743 49 HOH HOH . F 5 HOH A 44 744 151 HOH HOH . F 5 HOH A 45 745 159 HOH HOH . F 5 HOH A 46 746 21 HOH HOH . F 5 HOH A 47 747 47 HOH HOH . F 5 HOH A 48 748 5 HOH HOH . F 5 HOH A 49 749 33 HOH HOH . F 5 HOH A 50 750 4 HOH HOH . F 5 HOH A 51 751 39 HOH HOH . F 5 HOH A 52 752 162 HOH HOH . F 5 HOH A 53 753 67 HOH HOH . F 5 HOH A 54 754 14 HOH HOH . F 5 HOH A 55 755 15 HOH HOH . F 5 HOH A 56 756 82 HOH HOH . F 5 HOH A 57 757 43 HOH HOH . F 5 HOH A 58 758 7 HOH HOH . F 5 HOH A 59 759 35 HOH HOH . F 5 HOH A 60 760 149 HOH HOH . F 5 HOH A 61 761 158 HOH HOH . F 5 HOH A 62 762 81 HOH HOH . F 5 HOH A 63 763 24 HOH HOH . F 5 HOH A 64 764 133 HOH HOH . F 5 HOH A 65 765 1 HOH HOH . F 5 HOH A 66 766 23 HOH HOH . F 5 HOH A 67 767 13 HOH HOH . F 5 HOH A 68 768 22 HOH HOH . F 5 HOH A 69 769 135 HOH HOH . F 5 HOH A 70 770 20 HOH HOH . F 5 HOH A 71 771 140 HOH HOH . F 5 HOH A 72 772 130 HOH HOH . F 5 HOH A 73 773 71 HOH HOH . F 5 HOH A 74 774 76 HOH HOH . F 5 HOH A 75 775 10 HOH HOH . F 5 HOH A 76 776 148 HOH HOH . F 5 HOH A 77 777 161 HOH HOH . F 5 HOH A 78 778 160 HOH HOH . F 5 HOH A 79 779 78 HOH HOH . F 5 HOH A 80 780 50 HOH HOH . F 5 HOH A 81 781 127 HOH HOH . F 5 HOH A 82 782 95 HOH HOH . F 5 HOH A 83 783 138 HOH HOH . F 5 HOH A 84 784 167 HOH HOH . F 5 HOH A 85 785 91 HOH HOH . F 5 HOH A 86 786 147 HOH HOH . F 5 HOH A 87 787 64 HOH HOH . F 5 HOH A 88 788 155 HOH HOH . F 5 HOH A 89 789 153 HOH HOH . F 5 HOH A 90 790 46 HOH HOH . F 5 HOH A 91 791 83 HOH HOH . F 5 HOH A 92 792 73 HOH HOH . F 5 HOH A 93 793 41 HOH HOH . F 5 HOH A 94 794 166 HOH HOH . F 5 HOH A 95 795 66 HOH HOH . F 5 HOH A 96 796 113 HOH HOH . F 5 HOH A 97 797 85 HOH HOH . F 5 HOH A 98 798 146 HOH HOH . F 5 HOH A 99 799 42 HOH HOH . F 5 HOH A 100 800 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -38.446 35.926 16.265 1 73.7 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . E 4 -37.126 35.839 15.779 1 74.45 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . E 4 -39.336 36.593 15.222 1 73.27 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . E 4 -39.406 37.976 15.488 1 72.76 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . E 4 -38.754 36.377 13.83 1 72.64 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . E 4 -37.486 36.987 13.749 1 72.14 ? O3 GOL 604 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #