data_5E7M # _model_server_result.job_id a9O7xheNknewOJHK2RwPdw _model_server_result.datetime_utc '2025-02-05 12:55:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5E7M # _exptl.entry_id 5E7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E7M _cell.length_a 53.93 _cell.length_b 100.28 _cell.length_c 107.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5E7M _atom_sites.fract_transf_matrix[1][1] 0.018543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 801 801 ANP ANP . C 3 HOH A 1 901 5 HOH HOH . C 3 HOH A 2 902 1 HOH HOH . C 3 HOH A 3 903 4 HOH HOH . C 3 HOH A 4 904 2 HOH HOH . C 3 HOH A 5 905 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -31.913 1.823 -3.524 1 208.02 ? PG ANP 801 A 1 HETATM 2 O O1G ANP . . . B 2 -32.02 0.894 -4.768 1 137.49 ? O1G ANP 801 A 1 HETATM 3 O O2G ANP . . . B 2 -30.393 1.999 -3.137 1 130.02 ? O2G ANP 801 A 1 HETATM 4 O O3G ANP . . . B 2 -32.556 3.127 -3.876 1 134.72 ? O3G ANP 801 A 1 HETATM 5 P PB ANP . . . B 2 -34.257 0.527 -2.891 1 120.21 ? PB ANP 801 A 1 HETATM 6 O O1B ANP . . . B 2 -34.493 1.148 -4.229 1 124.24 ? O1B ANP 801 A 1 HETATM 7 O O2B ANP . . . B 2 -34.263 -1.023 -3.021 1 112.86 ? O2B ANP 801 A 1 HETATM 8 N N3B ANP . . . B 2 -32.764 1.02 -2.307 1 130.23 ? N3B ANP 801 A 1 HETATM 9 P PA ANP . . . B 2 -36.445 2.039 -2.332 1 123.69 ? PA ANP 801 A 1 HETATM 10 O O1A ANP . . . B 2 -35.768 3.243 -2.873 1 109.68 ? O1A ANP 801 A 1 HETATM 11 O O2A ANP . . . B 2 -37.316 2.239 -1.083 1 125.14 ? O2A ANP 801 A 1 HETATM 12 O O3A ANP . . . B 2 -35.384 0.945 -1.899 1 117.11 ? O3A ANP 801 A 1 HETATM 13 O O5' ANP . . . B 2 -37.262 1.4 -3.529 1 115.37 ? O5' ANP 801 A 1 HETATM 14 C C5' ANP . . . B 2 -37.421 2.08 -4.797 1 113.78 ? C5' ANP 801 A 1 HETATM 15 C C4' ANP . . . B 2 -38.863 2.495 -4.949 1 110.11 ? C4' ANP 801 A 1 HETATM 16 O O4' ANP . . . B 2 -39.729 1.394 -4.589 1 97.23 ? O4' ANP 801 A 1 HETATM 17 C C3' ANP . . . B 2 -39.294 3.693 -4.097 1 113.66 ? C3' ANP 801 A 1 HETATM 18 O O3' ANP . . . B 2 -39.963 4.672 -4.882 1 119.51 ? O3' ANP 801 A 1 HETATM 19 C C2' ANP . . . B 2 -40.225 3.07 -3.048 1 112.78 ? C2' ANP 801 A 1 HETATM 20 O O2' ANP . . . B 2 -41.261 3.954 -2.629 1 116.47 ? O2' ANP 801 A 1 HETATM 21 C C1' ANP . . . B 2 -40.799 1.885 -3.814 1 93.22 ? C1' ANP 801 A 1 HETATM 22 N N9 ANP . . . B 2 -41.287 0.815 -2.955 1 98.94 ? N9 ANP 801 A 1 HETATM 23 C C8 ANP . . . B 2 -40.663 0.306 -1.848 1 109.28 ? C8 ANP 801 A 1 HETATM 24 N N7 ANP . . . B 2 -41.323 -0.658 -1.247 1 113.07 ? N7 ANP 801 A 1 HETATM 25 C C5 ANP . . . B 2 -42.465 -0.794 -2.023 1 108.2 ? C5 ANP 801 A 1 HETATM 26 C C6 ANP . . . B 2 -43.578 -1.654 -1.917 1 108.35 ? C6 ANP 801 A 1 HETATM 27 N N6 ANP . . . B 2 -43.723 -2.572 -0.958 1 110.49 ? N6 ANP 801 A 1 HETATM 28 N N1 ANP . . . B 2 -44.55 -1.534 -2.852 1 114.84 ? N1 ANP 801 A 1 HETATM 29 C C2 ANP . . . B 2 -44.408 -0.621 -3.816 1 108 ? C2 ANP 801 A 1 HETATM 30 N N3 ANP . . . B 2 -43.408 0.243 -4.014 1 112.34 ? N3 ANP 801 A 1 HETATM 31 C C4 ANP . . . B 2 -42.458 0.099 -3.078 1 110.41 ? C4 ANP 801 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #