data_5E7Z # _model_server_result.job_id x43iv7t11ylEcOOqLB2Zdw _model_server_result.datetime_utc '2024-11-24 14:09:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 5E7Z # _exptl.entry_id 5E7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-TRYPTOPHAN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5E7Z _cell.length_a 206.357 _cell.length_b 206.357 _cell.length_c 66.941 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -22.313667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 89 A CYS 87 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 A NE2 HIS 371 A HIS 369 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc3 A OE1 GLU 413 A GLU 411 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc4 A OE2 GLU 413 A GLU 411 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 A OD2 ASP 443 A ASP 441 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 B SG CYS 89 B CYS 87 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc7 B NE2 HIS 371 B HIS 369 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc8 B OE1 GLU 413 B GLU 411 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc9 B OE2 GLU 413 B GLU 411 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc10 B OD2 ASP 443 B ASP 441 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id DTR _chem_comp.mon_nstd_flag . _chem_comp.name D-TRYPTOPHAN _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DTR sing 106 n n N H DTR sing 107 n n N H2 DTR sing 108 n n CA CB DTR sing 109 n n CA C DTR sing 110 n n CA HA DTR sing 111 n n CB CG DTR sing 112 n n CB HB2 DTR sing 113 n n CB HB3 DTR sing 114 n n CG CD1 DTR doub 115 n y CG CD2 DTR sing 116 n y CD1 NE1 DTR sing 117 n y CD1 HD1 DTR sing 118 n n NE1 CE2 DTR sing 119 n y NE1 HE1 DTR sing 120 n n CE2 CZ2 DTR doub 121 n y CE2 CD2 DTR sing 122 n y CZ2 CH2 DTR sing 123 n y CZ2 HZ2 DTR sing 124 n n CH2 CZ3 DTR doub 125 n y CH2 HH2 DTR sing 126 n n CZ3 CE3 DTR sing 127 n y CZ3 HZ3 DTR sing 128 n n CE3 CD2 DTR doub 129 n y CE3 HE3 DTR sing 130 n n C O DTR doub 131 n n C OXT DTR sing 132 n n OXT HXT DTR sing 133 n n # _atom_sites.entry_id 5E7Z _atom_sites.fract_transf_matrix[1][1] 0.004846 _atom_sites.fract_transf_matrix[1][2] 0.002798 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 501 SO4 SO4 . D 2 SO4 A 1 502 502 SO4 SO4 . E 3 MN A 1 503 503 MN MN . F 4 DTR A 1 504 504 DTR DTR . G 5 TRP A 1 505 505 TRP TRP . H 6 DPN A 1 506 506 DPN DPN . I 2 SO4 B 1 501 501 SO4 SO4 . J 2 SO4 B 1 502 502 SO4 SO4 . K 3 MN B 1 503 503 MN MN . L 7 GOL B 1 504 504 GOL GOL . M 4 DTR B 1 505 505 DTR DTR . N 5 TRP B 1 506 506 TRP TRP . O 6 DPN B 1 507 507 DPN DPN . P 8 HOH A 1 601 601 HOH HOH . P 8 HOH A 2 602 602 HOH HOH . P 8 HOH A 3 603 603 HOH HOH . P 8 HOH A 4 604 604 HOH HOH . P 8 HOH A 5 605 605 HOH HOH . P 8 HOH A 6 606 606 HOH HOH . P 8 HOH A 7 607 607 HOH HOH . P 8 HOH A 8 608 608 HOH HOH . P 8 HOH A 9 609 609 HOH HOH . P 8 HOH A 10 610 610 HOH HOH . P 8 HOH A 11 611 611 HOH HOH . P 8 HOH A 12 612 612 HOH HOH . P 8 HOH A 13 613 613 HOH HOH . P 8 HOH A 14 614 614 HOH HOH . P 8 HOH A 15 615 615 HOH HOH . P 8 HOH A 16 616 616 HOH HOH . P 8 HOH A 17 617 617 HOH HOH . P 8 HOH A 18 618 618 HOH HOH . P 8 HOH A 19 619 619 HOH HOH . P 8 HOH A 20 620 620 HOH HOH . P 8 HOH A 21 621 621 HOH HOH . P 8 HOH A 22 622 622 HOH HOH . P 8 HOH A 23 623 623 HOH HOH . P 8 HOH A 24 624 624 HOH HOH . P 8 HOH A 25 625 625 HOH HOH . P 8 HOH A 26 626 626 HOH HOH . P 8 HOH A 27 627 627 HOH HOH . P 8 HOH A 28 628 628 HOH HOH . P 8 HOH A 29 629 629 HOH HOH . P 8 HOH A 30 630 630 HOH HOH . P 8 HOH A 31 631 631 HOH HOH . P 8 HOH A 32 632 632 HOH HOH . P 8 HOH A 33 633 633 HOH HOH . P 8 HOH A 34 634 634 HOH HOH . P 8 HOH A 35 635 635 HOH HOH . P 8 HOH A 36 636 636 HOH HOH . P 8 HOH A 37 637 637 HOH HOH . P 8 HOH A 38 638 638 HOH HOH . P 8 HOH A 39 639 639 HOH HOH . P 8 HOH A 40 640 640 HOH HOH . P 8 HOH A 41 641 641 HOH HOH . P 8 HOH A 42 642 642 HOH HOH . P 8 HOH A 43 643 643 HOH HOH . P 8 HOH A 44 644 644 HOH HOH . P 8 HOH A 45 645 645 HOH HOH . P 8 HOH A 46 646 646 HOH HOH . P 8 HOH A 47 647 647 HOH HOH . P 8 HOH A 48 648 648 HOH HOH . P 8 HOH A 49 649 649 HOH HOH . P 8 HOH A 50 650 650 HOH HOH . P 8 HOH A 51 651 651 HOH HOH . P 8 HOH A 52 652 652 HOH HOH . P 8 HOH A 53 653 653 HOH HOH . P 8 HOH A 54 654 654 HOH HOH . P 8 HOH A 55 655 655 HOH HOH . P 8 HOH A 56 656 656 HOH HOH . P 8 HOH A 57 657 657 HOH HOH . P 8 HOH A 58 658 658 HOH HOH . P 8 HOH A 59 659 659 HOH HOH . P 8 HOH A 60 660 660 HOH HOH . P 8 HOH A 61 661 661 HOH HOH . P 8 HOH A 62 662 662 HOH HOH . P 8 HOH A 63 663 663 HOH HOH . P 8 HOH A 64 664 664 HOH HOH . P 8 HOH A 65 665 665 HOH HOH . P 8 HOH A 66 666 666 HOH HOH . P 8 HOH A 67 667 667 HOH HOH . P 8 HOH A 68 668 668 HOH HOH . P 8 HOH A 69 669 669 HOH HOH . Q 8 HOH B 1 601 601 HOH HOH . Q 8 HOH B 2 602 602 HOH HOH . Q 8 HOH B 3 603 603 HOH HOH . Q 8 HOH B 4 604 604 HOH HOH . Q 8 HOH B 5 605 605 HOH HOH . Q 8 HOH B 6 606 606 HOH HOH . Q 8 HOH B 7 607 607 HOH HOH . Q 8 HOH B 8 608 608 HOH HOH . Q 8 HOH B 9 609 609 HOH HOH . Q 8 HOH B 10 610 610 HOH HOH . Q 8 HOH B 11 611 611 HOH HOH . Q 8 HOH B 12 612 612 HOH HOH . Q 8 HOH B 13 613 613 HOH HOH . Q 8 HOH B 14 614 614 HOH HOH . Q 8 HOH B 15 615 615 HOH HOH . Q 8 HOH B 16 616 616 HOH HOH . Q 8 HOH B 17 617 617 HOH HOH . Q 8 HOH B 18 618 618 HOH HOH . Q 8 HOH B 19 619 619 HOH HOH . Q 8 HOH B 20 620 620 HOH HOH . Q 8 HOH B 21 621 621 HOH HOH . Q 8 HOH B 22 622 622 HOH HOH . Q 8 HOH B 23 623 623 HOH HOH . Q 8 HOH B 24 624 624 HOH HOH . Q 8 HOH B 25 625 625 HOH HOH . Q 8 HOH B 26 626 626 HOH HOH . Q 8 HOH B 27 627 627 HOH HOH . Q 8 HOH B 28 628 628 HOH HOH . Q 8 HOH B 29 629 629 HOH HOH . Q 8 HOH B 30 630 630 HOH HOH . Q 8 HOH B 31 631 631 HOH HOH . Q 8 HOH B 32 632 632 HOH HOH . Q 8 HOH B 33 633 633 HOH HOH . Q 8 HOH B 34 634 634 HOH HOH . Q 8 HOH B 35 635 635 HOH HOH . Q 8 HOH B 36 636 636 HOH HOH . Q 8 HOH B 37 637 637 HOH HOH . Q 8 HOH B 38 638 638 HOH HOH . Q 8 HOH B 39 639 639 HOH HOH . Q 8 HOH B 40 640 640 HOH HOH . Q 8 HOH B 41 641 641 HOH HOH . Q 8 HOH B 42 642 642 HOH HOH . Q 8 HOH B 43 643 643 HOH HOH . Q 8 HOH B 44 644 644 HOH HOH . Q 8 HOH B 45 645 645 HOH HOH . Q 8 HOH B 46 646 646 HOH HOH . Q 8 HOH B 47 647 647 HOH HOH . Q 8 HOH B 48 648 648 HOH HOH . Q 8 HOH B 49 649 649 HOH HOH . Q 8 HOH B 50 650 650 HOH HOH . Q 8 HOH B 51 651 651 HOH HOH . Q 8 HOH B 52 652 652 HOH HOH . Q 8 HOH B 53 653 653 HOH HOH . Q 8 HOH B 54 654 654 HOH HOH . Q 8 HOH B 55 655 655 HOH HOH . Q 8 HOH B 56 656 656 HOH HOH . Q 8 HOH B 57 657 657 HOH HOH . Q 8 HOH B 58 658 658 HOH HOH . Q 8 HOH B 59 659 659 HOH HOH . Q 8 HOH B 60 660 660 HOH HOH . Q 8 HOH B 61 661 661 HOH HOH . Q 8 HOH B 62 662 662 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DTR . A . F 4 -54.092 76.377 -15.181 0.5 38.24 ? N DTR 504 A 1 HETATM 2 C CA DTR . A . F 4 -54.506 75.021 -15.029 0.5 36.18 ? CA DTR 504 A 1 HETATM 3 C CB DTR . A . F 4 -53.634 74.322 -14.016 0.5 30.32 ? CB DTR 504 A 1 HETATM 4 C CG DTR . A . F 4 -54.346 73.258 -13.286 0.5 27.77 ? CG DTR 504 A 1 HETATM 5 C CD1 DTR . A . F 4 -55.194 73.426 -12.202 0.5 28 ? CD1 DTR 504 A 1 HETATM 6 N NE1 DTR . A . F 4 -55.75 72.227 -11.856 0.5 26.79 ? NE1 DTR 504 A 1 HETATM 7 C CE2 DTR . A . F 4 -55.301 71.249 -12.68 0.5 25.98 ? CE2 DTR 504 A 1 HETATM 8 C CZ2 DTR . A . F 4 -55.588 69.861 -12.72 0.5 26.57 ? CZ2 DTR 504 A 1 HETATM 9 C CH2 DTR . A . F 4 -54.929 69.117 -13.734 0.5 28.93 ? CH2 DTR 504 A 1 HETATM 10 C CZ3 DTR . A . F 4 -54.053 69.705 -14.647 0.5 27.74 ? CZ3 DTR 504 A 1 HETATM 11 C CE3 DTR . A . F 4 -53.799 71.068 -14.575 0.5 26.55 ? CE3 DTR 504 A 1 HETATM 12 C CD2 DTR . A . F 4 -54.419 71.831 -13.605 0.5 26.46 ? CD2 DTR 504 A 1 HETATM 13 C C DTR . A . F 4 -54.344 74.257 -16.304 0.5 35.92 ? C DTR 504 A 1 HETATM 14 O O DTR . A . F 4 -55.384 74.004 -16.943 0.5 35.38 ? O DTR 504 A 1 HETATM 15 O OXT DTR . A . F 4 -53.209 73.928 -16.7 0.5 44.17 ? OXT DTR 504 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #