data_5E7Z # _model_server_result.job_id Yyvc4QqUWMm5B5xvLOp2rQ _model_server_result.datetime_utc '2024-11-24 13:44:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":504}' # _entry.id 5E7Z # _exptl.entry_id 5E7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5E7Z _cell.length_a 206.357 _cell.length_b 206.357 _cell.length_c 66.941 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -22.313667 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 89 A CYS 87 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 A NE2 HIS 371 A HIS 369 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc3 A OE1 GLU 413 A GLU 411 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc4 A OE2 GLU 413 A GLU 411 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 A OD2 ASP 443 A ASP 441 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 B SG CYS 89 B CYS 87 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc7 B NE2 HIS 371 B HIS 369 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc8 B OE1 GLU 413 B GLU 411 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc9 B OE2 GLU 413 B GLU 411 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc10 B OD2 ASP 443 B ASP 441 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 5E7Z _atom_sites.fract_transf_matrix[1][1] 0.004846 _atom_sites.fract_transf_matrix[1][2] 0.002798 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 501 SO4 SO4 . D 2 SO4 A 1 502 502 SO4 SO4 . E 3 MN A 1 503 503 MN MN . F 4 DTR A 1 504 504 DTR DTR . G 5 TRP A 1 505 505 TRP TRP . H 6 DPN A 1 506 506 DPN DPN . I 2 SO4 B 1 501 501 SO4 SO4 . J 2 SO4 B 1 502 502 SO4 SO4 . K 3 MN B 1 503 503 MN MN . L 7 GOL B 1 504 504 GOL GOL . M 4 DTR B 1 505 505 DTR DTR . N 5 TRP B 1 506 506 TRP TRP . O 6 DPN B 1 507 507 DPN DPN . P 8 HOH A 1 601 601 HOH HOH . P 8 HOH A 2 602 602 HOH HOH . P 8 HOH A 3 603 603 HOH HOH . P 8 HOH A 4 604 604 HOH HOH . P 8 HOH A 5 605 605 HOH HOH . P 8 HOH A 6 606 606 HOH HOH . P 8 HOH A 7 607 607 HOH HOH . P 8 HOH A 8 608 608 HOH HOH . P 8 HOH A 9 609 609 HOH HOH . P 8 HOH A 10 610 610 HOH HOH . P 8 HOH A 11 611 611 HOH HOH . P 8 HOH A 12 612 612 HOH HOH . P 8 HOH A 13 613 613 HOH HOH . P 8 HOH A 14 614 614 HOH HOH . P 8 HOH A 15 615 615 HOH HOH . P 8 HOH A 16 616 616 HOH HOH . P 8 HOH A 17 617 617 HOH HOH . P 8 HOH A 18 618 618 HOH HOH . P 8 HOH A 19 619 619 HOH HOH . P 8 HOH A 20 620 620 HOH HOH . P 8 HOH A 21 621 621 HOH HOH . P 8 HOH A 22 622 622 HOH HOH . P 8 HOH A 23 623 623 HOH HOH . P 8 HOH A 24 624 624 HOH HOH . P 8 HOH A 25 625 625 HOH HOH . P 8 HOH A 26 626 626 HOH HOH . P 8 HOH A 27 627 627 HOH HOH . P 8 HOH A 28 628 628 HOH HOH . P 8 HOH A 29 629 629 HOH HOH . P 8 HOH A 30 630 630 HOH HOH . P 8 HOH A 31 631 631 HOH HOH . P 8 HOH A 32 632 632 HOH HOH . P 8 HOH A 33 633 633 HOH HOH . P 8 HOH A 34 634 634 HOH HOH . P 8 HOH A 35 635 635 HOH HOH . P 8 HOH A 36 636 636 HOH HOH . P 8 HOH A 37 637 637 HOH HOH . P 8 HOH A 38 638 638 HOH HOH . P 8 HOH A 39 639 639 HOH HOH . P 8 HOH A 40 640 640 HOH HOH . P 8 HOH A 41 641 641 HOH HOH . P 8 HOH A 42 642 642 HOH HOH . P 8 HOH A 43 643 643 HOH HOH . P 8 HOH A 44 644 644 HOH HOH . P 8 HOH A 45 645 645 HOH HOH . P 8 HOH A 46 646 646 HOH HOH . P 8 HOH A 47 647 647 HOH HOH . P 8 HOH A 48 648 648 HOH HOH . P 8 HOH A 49 649 649 HOH HOH . P 8 HOH A 50 650 650 HOH HOH . P 8 HOH A 51 651 651 HOH HOH . P 8 HOH A 52 652 652 HOH HOH . P 8 HOH A 53 653 653 HOH HOH . P 8 HOH A 54 654 654 HOH HOH . P 8 HOH A 55 655 655 HOH HOH . P 8 HOH A 56 656 656 HOH HOH . P 8 HOH A 57 657 657 HOH HOH . P 8 HOH A 58 658 658 HOH HOH . P 8 HOH A 59 659 659 HOH HOH . P 8 HOH A 60 660 660 HOH HOH . P 8 HOH A 61 661 661 HOH HOH . P 8 HOH A 62 662 662 HOH HOH . P 8 HOH A 63 663 663 HOH HOH . P 8 HOH A 64 664 664 HOH HOH . P 8 HOH A 65 665 665 HOH HOH . P 8 HOH A 66 666 666 HOH HOH . P 8 HOH A 67 667 667 HOH HOH . P 8 HOH A 68 668 668 HOH HOH . P 8 HOH A 69 669 669 HOH HOH . Q 8 HOH B 1 601 601 HOH HOH . Q 8 HOH B 2 602 602 HOH HOH . Q 8 HOH B 3 603 603 HOH HOH . Q 8 HOH B 4 604 604 HOH HOH . Q 8 HOH B 5 605 605 HOH HOH . Q 8 HOH B 6 606 606 HOH HOH . Q 8 HOH B 7 607 607 HOH HOH . Q 8 HOH B 8 608 608 HOH HOH . Q 8 HOH B 9 609 609 HOH HOH . Q 8 HOH B 10 610 610 HOH HOH . Q 8 HOH B 11 611 611 HOH HOH . Q 8 HOH B 12 612 612 HOH HOH . Q 8 HOH B 13 613 613 HOH HOH . Q 8 HOH B 14 614 614 HOH HOH . Q 8 HOH B 15 615 615 HOH HOH . Q 8 HOH B 16 616 616 HOH HOH . Q 8 HOH B 17 617 617 HOH HOH . Q 8 HOH B 18 618 618 HOH HOH . Q 8 HOH B 19 619 619 HOH HOH . Q 8 HOH B 20 620 620 HOH HOH . Q 8 HOH B 21 621 621 HOH HOH . Q 8 HOH B 22 622 622 HOH HOH . Q 8 HOH B 23 623 623 HOH HOH . Q 8 HOH B 24 624 624 HOH HOH . Q 8 HOH B 25 625 625 HOH HOH . Q 8 HOH B 26 626 626 HOH HOH . Q 8 HOH B 27 627 627 HOH HOH . Q 8 HOH B 28 628 628 HOH HOH . Q 8 HOH B 29 629 629 HOH HOH . Q 8 HOH B 30 630 630 HOH HOH . Q 8 HOH B 31 631 631 HOH HOH . Q 8 HOH B 32 632 632 HOH HOH . Q 8 HOH B 33 633 633 HOH HOH . Q 8 HOH B 34 634 634 HOH HOH . Q 8 HOH B 35 635 635 HOH HOH . Q 8 HOH B 36 636 636 HOH HOH . Q 8 HOH B 37 637 637 HOH HOH . Q 8 HOH B 38 638 638 HOH HOH . Q 8 HOH B 39 639 639 HOH HOH . Q 8 HOH B 40 640 640 HOH HOH . Q 8 HOH B 41 641 641 HOH HOH . Q 8 HOH B 42 642 642 HOH HOH . Q 8 HOH B 43 643 643 HOH HOH . Q 8 HOH B 44 644 644 HOH HOH . Q 8 HOH B 45 645 645 HOH HOH . Q 8 HOH B 46 646 646 HOH HOH . Q 8 HOH B 47 647 647 HOH HOH . Q 8 HOH B 48 648 648 HOH HOH . Q 8 HOH B 49 649 649 HOH HOH . Q 8 HOH B 50 650 650 HOH HOH . Q 8 HOH B 51 651 651 HOH HOH . Q 8 HOH B 52 652 652 HOH HOH . Q 8 HOH B 53 653 653 HOH HOH . Q 8 HOH B 54 654 654 HOH HOH . Q 8 HOH B 55 655 655 HOH HOH . Q 8 HOH B 56 656 656 HOH HOH . Q 8 HOH B 57 657 657 HOH HOH . Q 8 HOH B 58 658 658 HOH HOH . Q 8 HOH B 59 659 659 HOH HOH . Q 8 HOH B 60 660 660 HOH HOH . Q 8 HOH B 61 661 661 HOH HOH . Q 8 HOH B 62 662 662 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 7 -71.541 81.337 -9.195 1 37.79 ? C1 GOL 504 B 1 HETATM 2 O O1 GOL . . . L 7 -70.702 80.836 -8.104 1 40.56 ? O1 GOL 504 B 1 HETATM 3 C C2 GOL . . . L 7 -70.859 81.253 -10.579 1 42.04 ? C2 GOL 504 B 1 HETATM 4 O O2 GOL . . . L 7 -69.496 81.702 -10.512 1 42.14 ? O2 GOL 504 B 1 HETATM 5 C C3 GOL . . . L 7 -71.595 82.071 -11.675 1 43.66 ? C3 GOL 504 B 1 HETATM 6 O O3 GOL . . . L 7 -71.117 83.418 -11.877 1 37.51 ? O3 GOL 504 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #