data_5E7Z # _model_server_result.job_id uiVTCW-N9irCIQoMvNa6wg _model_server_result.datetime_utc '2024-11-07 04:30:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":506}' # _entry.id 5E7Z # _exptl.entry_id 5E7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5E7Z _cell.length_a 206.357 _cell.length_b 206.357 _cell.length_c 66.941 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -22.313667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 89 A CYS 87 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 A NE2 HIS 371 A HIS 369 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc3 A OE1 GLU 413 A GLU 411 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc4 A OE2 GLU 413 A GLU 411 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 A OD2 ASP 443 A ASP 441 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 B SG CYS 89 B CYS 87 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc7 B NE2 HIS 371 B HIS 369 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc8 B OE1 GLU 413 B GLU 411 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc9 B OE2 GLU 413 B GLU 411 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc10 B OD2 ASP 443 B ASP 441 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 374 n n N H TRP sing 375 n n N H2 TRP sing 376 n n CA C TRP sing 377 n n CA CB TRP sing 378 n n CA HA TRP sing 379 n n C O TRP doub 380 n n C OXT TRP sing 381 n n CB CG TRP sing 382 n n CB HB2 TRP sing 383 n n CB HB3 TRP sing 384 n n CG CD1 TRP doub 385 n y CG CD2 TRP sing 386 n y CD1 NE1 TRP sing 387 n y CD1 HD1 TRP sing 388 n n CD2 CE2 TRP doub 389 n y CD2 CE3 TRP sing 390 n y NE1 CE2 TRP sing 391 n y NE1 HE1 TRP sing 392 n n CE2 CZ2 TRP sing 393 n y CE3 CZ3 TRP doub 394 n y CE3 HE3 TRP sing 395 n n CZ2 CH2 TRP doub 396 n y CZ2 HZ2 TRP sing 397 n n CZ3 CH2 TRP sing 398 n y CZ3 HZ3 TRP sing 399 n n CH2 HH2 TRP sing 400 n n OXT HXT TRP sing 401 n n # _atom_sites.entry_id 5E7Z _atom_sites.fract_transf_matrix[1][1] 0.004846 _atom_sites.fract_transf_matrix[1][2] 0.002798 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 501 SO4 SO4 . D 2 SO4 A 1 502 502 SO4 SO4 . E 3 MN A 1 503 503 MN MN . F 4 DTR A 1 504 504 DTR DTR . G 5 TRP A 1 505 505 TRP TRP . H 6 DPN A 1 506 506 DPN DPN . I 2 SO4 B 1 501 501 SO4 SO4 . J 2 SO4 B 1 502 502 SO4 SO4 . K 3 MN B 1 503 503 MN MN . L 7 GOL B 1 504 504 GOL GOL . M 4 DTR B 1 505 505 DTR DTR . N 5 TRP B 1 506 506 TRP TRP . O 6 DPN B 1 507 507 DPN DPN . P 8 HOH A 1 601 601 HOH HOH . P 8 HOH A 2 602 602 HOH HOH . P 8 HOH A 3 603 603 HOH HOH . P 8 HOH A 4 604 604 HOH HOH . P 8 HOH A 5 605 605 HOH HOH . P 8 HOH A 6 606 606 HOH HOH . P 8 HOH A 7 607 607 HOH HOH . P 8 HOH A 8 608 608 HOH HOH . P 8 HOH A 9 609 609 HOH HOH . P 8 HOH A 10 610 610 HOH HOH . P 8 HOH A 11 611 611 HOH HOH . P 8 HOH A 12 612 612 HOH HOH . P 8 HOH A 13 613 613 HOH HOH . P 8 HOH A 14 614 614 HOH HOH . P 8 HOH A 15 615 615 HOH HOH . P 8 HOH A 16 616 616 HOH HOH . P 8 HOH A 17 617 617 HOH HOH . P 8 HOH A 18 618 618 HOH HOH . P 8 HOH A 19 619 619 HOH HOH . P 8 HOH A 20 620 620 HOH HOH . P 8 HOH A 21 621 621 HOH HOH . P 8 HOH A 22 622 622 HOH HOH . P 8 HOH A 23 623 623 HOH HOH . P 8 HOH A 24 624 624 HOH HOH . P 8 HOH A 25 625 625 HOH HOH . P 8 HOH A 26 626 626 HOH HOH . P 8 HOH A 27 627 627 HOH HOH . P 8 HOH A 28 628 628 HOH HOH . P 8 HOH A 29 629 629 HOH HOH . P 8 HOH A 30 630 630 HOH HOH . P 8 HOH A 31 631 631 HOH HOH . P 8 HOH A 32 632 632 HOH HOH . P 8 HOH A 33 633 633 HOH HOH . P 8 HOH A 34 634 634 HOH HOH . P 8 HOH A 35 635 635 HOH HOH . P 8 HOH A 36 636 636 HOH HOH . P 8 HOH A 37 637 637 HOH HOH . P 8 HOH A 38 638 638 HOH HOH . P 8 HOH A 39 639 639 HOH HOH . P 8 HOH A 40 640 640 HOH HOH . P 8 HOH A 41 641 641 HOH HOH . P 8 HOH A 42 642 642 HOH HOH . P 8 HOH A 43 643 643 HOH HOH . P 8 HOH A 44 644 644 HOH HOH . P 8 HOH A 45 645 645 HOH HOH . P 8 HOH A 46 646 646 HOH HOH . P 8 HOH A 47 647 647 HOH HOH . P 8 HOH A 48 648 648 HOH HOH . P 8 HOH A 49 649 649 HOH HOH . P 8 HOH A 50 650 650 HOH HOH . P 8 HOH A 51 651 651 HOH HOH . P 8 HOH A 52 652 652 HOH HOH . P 8 HOH A 53 653 653 HOH HOH . P 8 HOH A 54 654 654 HOH HOH . P 8 HOH A 55 655 655 HOH HOH . P 8 HOH A 56 656 656 HOH HOH . P 8 HOH A 57 657 657 HOH HOH . P 8 HOH A 58 658 658 HOH HOH . P 8 HOH A 59 659 659 HOH HOH . P 8 HOH A 60 660 660 HOH HOH . P 8 HOH A 61 661 661 HOH HOH . P 8 HOH A 62 662 662 HOH HOH . P 8 HOH A 63 663 663 HOH HOH . P 8 HOH A 64 664 664 HOH HOH . P 8 HOH A 65 665 665 HOH HOH . P 8 HOH A 66 666 666 HOH HOH . P 8 HOH A 67 667 667 HOH HOH . P 8 HOH A 68 668 668 HOH HOH . P 8 HOH A 69 669 669 HOH HOH . Q 8 HOH B 1 601 601 HOH HOH . Q 8 HOH B 2 602 602 HOH HOH . Q 8 HOH B 3 603 603 HOH HOH . Q 8 HOH B 4 604 604 HOH HOH . Q 8 HOH B 5 605 605 HOH HOH . Q 8 HOH B 6 606 606 HOH HOH . Q 8 HOH B 7 607 607 HOH HOH . Q 8 HOH B 8 608 608 HOH HOH . Q 8 HOH B 9 609 609 HOH HOH . Q 8 HOH B 10 610 610 HOH HOH . Q 8 HOH B 11 611 611 HOH HOH . Q 8 HOH B 12 612 612 HOH HOH . Q 8 HOH B 13 613 613 HOH HOH . Q 8 HOH B 14 614 614 HOH HOH . Q 8 HOH B 15 615 615 HOH HOH . Q 8 HOH B 16 616 616 HOH HOH . Q 8 HOH B 17 617 617 HOH HOH . Q 8 HOH B 18 618 618 HOH HOH . Q 8 HOH B 19 619 619 HOH HOH . Q 8 HOH B 20 620 620 HOH HOH . Q 8 HOH B 21 621 621 HOH HOH . Q 8 HOH B 22 622 622 HOH HOH . Q 8 HOH B 23 623 623 HOH HOH . Q 8 HOH B 24 624 624 HOH HOH . Q 8 HOH B 25 625 625 HOH HOH . Q 8 HOH B 26 626 626 HOH HOH . Q 8 HOH B 27 627 627 HOH HOH . Q 8 HOH B 28 628 628 HOH HOH . Q 8 HOH B 29 629 629 HOH HOH . Q 8 HOH B 30 630 630 HOH HOH . Q 8 HOH B 31 631 631 HOH HOH . Q 8 HOH B 32 632 632 HOH HOH . Q 8 HOH B 33 633 633 HOH HOH . Q 8 HOH B 34 634 634 HOH HOH . Q 8 HOH B 35 635 635 HOH HOH . Q 8 HOH B 36 636 636 HOH HOH . Q 8 HOH B 37 637 637 HOH HOH . Q 8 HOH B 38 638 638 HOH HOH . Q 8 HOH B 39 639 639 HOH HOH . Q 8 HOH B 40 640 640 HOH HOH . Q 8 HOH B 41 641 641 HOH HOH . Q 8 HOH B 42 642 642 HOH HOH . Q 8 HOH B 43 643 643 HOH HOH . Q 8 HOH B 44 644 644 HOH HOH . Q 8 HOH B 45 645 645 HOH HOH . Q 8 HOH B 46 646 646 HOH HOH . Q 8 HOH B 47 647 647 HOH HOH . Q 8 HOH B 48 648 648 HOH HOH . Q 8 HOH B 49 649 649 HOH HOH . Q 8 HOH B 50 650 650 HOH HOH . Q 8 HOH B 51 651 651 HOH HOH . Q 8 HOH B 52 652 652 HOH HOH . Q 8 HOH B 53 653 653 HOH HOH . Q 8 HOH B 54 654 654 HOH HOH . Q 8 HOH B 55 655 655 HOH HOH . Q 8 HOH B 56 656 656 HOH HOH . Q 8 HOH B 57 657 657 HOH HOH . Q 8 HOH B 58 658 658 HOH HOH . Q 8 HOH B 59 659 659 HOH HOH . Q 8 HOH B 60 660 660 HOH HOH . Q 8 HOH B 61 661 661 HOH HOH . Q 8 HOH B 62 662 662 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . B . N 5 -64.348 90.793 -10.945 0.5 20.06 ? N TRP 506 B 1 HETATM 2 C CA TRP . B . N 5 -64.649 92.061 -10.297 0.5 20.38 ? CA TRP 506 B 1 HETATM 3 C C TRP . B . N 5 -65.978 91.996 -9.553 0.5 23.18 ? C TRP 506 B 1 HETATM 4 O O TRP . B . N 5 -66.7 90.968 -9.738 0.5 24.34 ? O TRP 506 B 1 HETATM 5 C CB TRP . B . N 5 -64.668 93.196 -11.322 0.5 20.36 ? CB TRP 506 B 1 HETATM 6 C CG TRP . B . N 5 -65.704 93.027 -12.391 0.5 19.84 ? CG TRP 506 B 1 HETATM 7 C CD1 TRP . B . N 5 -65.585 92.303 -13.537 0.5 19.39 ? CD1 TRP 506 B 1 HETATM 8 C CD2 TRP . B . N 5 -67.016 93.599 -12.412 0.5 19.8 ? CD2 TRP 506 B 1 HETATM 9 N NE1 TRP . B . N 5 -66.741 92.385 -14.271 0.5 21.63 ? NE1 TRP 506 B 1 HETATM 10 C CE2 TRP . B . N 5 -67.636 93.176 -13.602 0.5 19.51 ? CE2 TRP 506 B 1 HETATM 11 C CE3 TRP . B . N 5 -67.727 94.428 -11.539 0.5 20.1 ? CE3 TRP 506 B 1 HETATM 12 C CZ2 TRP . B . N 5 -68.933 93.551 -13.942 0.5 19.73 ? CZ2 TRP 506 B 1 HETATM 13 C CZ3 TRP . B . N 5 -69.014 94.799 -11.879 0.5 19.84 ? CZ3 TRP 506 B 1 HETATM 14 C CH2 TRP . B . N 5 -69.603 94.361 -13.07 0.5 19.5 ? CH2 TRP 506 B 1 HETATM 15 O OXT TRP . B . N 5 -66.276 92.969 -8.794 0.5 23.33 ? OXT TRP 506 B 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #