data_5E8A # _model_server_result.job_id 5EbgCvlWSa_47jv7yFdujA _model_server_result.datetime_utc '2024-11-17 04:43:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5E8A # _exptl.entry_id 5E8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 648.635 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '3-deoxy-3-[4-(4-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(4-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E8A _cell.length_a 36.907 _cell.length_b 58.407 _cell.length_c 63.808 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H30 F2 N6 O8 S' _chem_comp.formula_weight 648.635 _chem_comp.id 5KS _chem_comp.mon_nstd_flag . _chem_comp.name '3-deoxy-3-[4-(4-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(4-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6' C6' 5KS sing 1 n n C6' C5' 5KS sing 2 n n C5' O5' 5KS sing 3 n n C5' C4' 5KS sing 4 n n N2 N3 5KS doub 5 n y N2 N1 5KS sing 6 n y O5' C1' 5KS sing 7 n n O2 C2 5KS sing 8 n n N3 CB 5KS sing 9 n y C3 N1 5KS sing 10 n n C3 C2 5KS sing 11 n n C3 C4 5KS sing 12 n n C4' O4' 5KS sing 13 n n C4' C3' 5KS sing 14 n n N1 CA 5KS sing 15 n y C1 C2 5KS sing 16 n n C1 S1 5KS sing 17 n n C1 O5 5KS sing 18 n n C1' S1 5KS sing 19 n n C1' C2' 5KS sing 20 n n C5 C4 5KS sing 21 n n C5 O5 5KS sing 22 n n C5 C6 5KS sing 23 n n C4 O4 5KS sing 24 n n CB CA 5KS doub 25 n y CB CD 5KS sing 26 n n O6 C6 5KS sing 27 n n CE CD 5KS doub 28 n y CE CF 5KS sing 29 n y C3' C2' 5KS sing 30 n n C3' N1' 5KS sing 31 n n C2' O2' 5KS sing 32 n n CD CI 5KS sing 33 n y CF CG 5KS doub 34 n y N1' N2' 5KS sing 35 n y N1' CA' 5KS sing 36 n y CI CH 5KS doub 37 n y N2' N3' 5KS doub 38 n y CA' CB' 5KS doub 39 n y CG CH 5KS sing 40 n y CG F 5KS sing 41 n n CB' N3' 5KS sing 42 n y CB' CD' 5KS sing 43 n n CD' CI' 5KS doub 44 n y CD' CE' 5KS sing 45 n y CI' CH' 5KS sing 46 n y CE' CF' 5KS doub 47 n y CH' CG' 5KS doub 48 n y CF' CG' 5KS sing 49 n y CG' F' 5KS sing 50 n n C6 H1 5KS sing 51 n n C6 H2 5KS sing 52 n n C5 H3 5KS sing 53 n n C2 H4 5KS sing 54 n n C4 H5 5KS sing 55 n n C5' H6 5KS sing 56 n n C4' H7 5KS sing 57 n n C2' H8 5KS sing 58 n n C6' H9 5KS sing 59 n n C6' H10 5KS sing 60 n n O6 H11 5KS sing 61 n n O4 H12 5KS sing 62 n n C3 H13 5KS sing 63 n n CA H14 5KS sing 64 n n CI H15 5KS sing 65 n n CH H16 5KS sing 66 n n CF H17 5KS sing 67 n n CE H18 5KS sing 68 n n O2 H19 5KS sing 69 n n C1 H20 5KS sing 70 n n C1' H21 5KS sing 71 n n O6' H22 5KS sing 72 n n O2' H23 5KS sing 73 n n C3' H24 5KS sing 74 n n O4' H25 5KS sing 75 n n CA' H26 5KS sing 76 n n CI' H27 5KS sing 77 n n CH' H28 5KS sing 78 n n CF' H29 5KS sing 79 n n CE' H30 5KS sing 80 n n # _atom_sites.entry_id 5E8A _atom_sites.fract_transf_matrix[1][1] 0.027095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 301 1 CL CL . C 3 5KS A 1 302 1 5KS TDM . D 4 HOH A 1 401 129 HOH HOH . D 4 HOH A 2 402 88 HOH HOH . D 4 HOH A 3 403 95 HOH HOH . D 4 HOH A 4 404 71 HOH HOH . D 4 HOH A 5 405 146 HOH HOH . D 4 HOH A 6 406 18 HOH HOH . D 4 HOH A 7 407 128 HOH HOH . D 4 HOH A 8 408 35 HOH HOH . D 4 HOH A 9 409 14 HOH HOH . D 4 HOH A 10 410 130 HOH HOH . D 4 HOH A 11 411 47 HOH HOH . D 4 HOH A 12 412 72 HOH HOH . D 4 HOH A 13 413 44 HOH HOH . D 4 HOH A 14 414 42 HOH HOH . D 4 HOH A 15 415 16 HOH HOH . D 4 HOH A 16 416 93 HOH HOH . D 4 HOH A 17 417 55 HOH HOH . D 4 HOH A 18 418 26 HOH HOH . D 4 HOH A 19 419 17 HOH HOH . D 4 HOH A 20 420 103 HOH HOH . D 4 HOH A 21 421 51 HOH HOH . D 4 HOH A 22 422 91 HOH HOH . D 4 HOH A 23 423 170 HOH HOH . D 4 HOH A 24 424 142 HOH HOH . D 4 HOH A 25 425 39 HOH HOH . D 4 HOH A 26 426 49 HOH HOH . D 4 HOH A 27 427 33 HOH HOH . D 4 HOH A 28 428 9 HOH HOH . D 4 HOH A 29 429 168 HOH HOH . D 4 HOH A 30 430 2 HOH HOH . D 4 HOH A 31 431 124 HOH HOH . D 4 HOH A 32 432 1 HOH HOH . D 4 HOH A 33 433 61 HOH HOH . D 4 HOH A 34 434 131 HOH HOH . D 4 HOH A 35 435 3 HOH HOH . D 4 HOH A 36 436 28 HOH HOH . D 4 HOH A 37 437 84 HOH HOH . D 4 HOH A 38 438 134 HOH HOH . D 4 HOH A 39 439 113 HOH HOH . D 4 HOH A 40 440 96 HOH HOH . D 4 HOH A 41 441 127 HOH HOH . D 4 HOH A 42 442 171 HOH HOH . D 4 HOH A 43 443 102 HOH HOH . D 4 HOH A 44 444 136 HOH HOH . D 4 HOH A 45 445 111 HOH HOH . D 4 HOH A 46 446 11 HOH HOH . D 4 HOH A 47 447 5 HOH HOH . D 4 HOH A 48 448 106 HOH HOH . D 4 HOH A 49 449 76 HOH HOH . D 4 HOH A 50 450 114 HOH HOH . D 4 HOH A 51 451 58 HOH HOH . D 4 HOH A 52 452 60 HOH HOH . D 4 HOH A 53 453 30 HOH HOH . D 4 HOH A 54 454 77 HOH HOH . D 4 HOH A 55 455 101 HOH HOH . D 4 HOH A 56 456 22 HOH HOH . D 4 HOH A 57 457 70 HOH HOH . D 4 HOH A 58 458 116 HOH HOH . D 4 HOH A 59 459 7 HOH HOH . D 4 HOH A 60 460 13 HOH HOH . D 4 HOH A 61 461 8 HOH HOH . D 4 HOH A 62 462 144 HOH HOH . D 4 HOH A 63 463 82 HOH HOH . D 4 HOH A 64 464 169 HOH HOH . D 4 HOH A 65 465 15 HOH HOH . D 4 HOH A 66 466 97 HOH HOH . D 4 HOH A 67 467 4 HOH HOH . D 4 HOH A 68 468 108 HOH HOH . D 4 HOH A 69 469 36 HOH HOH . D 4 HOH A 70 470 167 HOH HOH . D 4 HOH A 71 471 159 HOH HOH . D 4 HOH A 72 472 40 HOH HOH . D 4 HOH A 73 473 10 HOH HOH . D 4 HOH A 74 474 19 HOH HOH . D 4 HOH A 75 475 80 HOH HOH . D 4 HOH A 76 476 133 HOH HOH . D 4 HOH A 77 477 56 HOH HOH . D 4 HOH A 78 478 62 HOH HOH . D 4 HOH A 79 479 164 HOH HOH . D 4 HOH A 80 480 46 HOH HOH . D 4 HOH A 81 481 110 HOH HOH . D 4 HOH A 82 482 43 HOH HOH . D 4 HOH A 83 483 6 HOH HOH . D 4 HOH A 84 484 163 HOH HOH . D 4 HOH A 85 485 29 HOH HOH . D 4 HOH A 86 486 65 HOH HOH . D 4 HOH A 87 487 45 HOH HOH . D 4 HOH A 88 488 57 HOH HOH . D 4 HOH A 89 489 172 HOH HOH . D 4 HOH A 90 490 69 HOH HOH . D 4 HOH A 91 491 27 HOH HOH . D 4 HOH A 92 492 152 HOH HOH . D 4 HOH A 93 493 54 HOH HOH . D 4 HOH A 94 494 87 HOH HOH . D 4 HOH A 95 495 12 HOH HOH . D 4 HOH A 96 496 52 HOH HOH . D 4 HOH A 97 497 67 HOH HOH . D 4 HOH A 98 498 21 HOH HOH . D 4 HOH A 99 499 166 HOH HOH . D 4 HOH A 100 500 50 HOH HOH . D 4 HOH A 101 501 81 HOH HOH . D 4 HOH A 102 502 147 HOH HOH . D 4 HOH A 103 503 53 HOH HOH . D 4 HOH A 104 504 150 HOH HOH . D 4 HOH A 105 505 115 HOH HOH . D 4 HOH A 106 506 20 HOH HOH . D 4 HOH A 107 507 48 HOH HOH . D 4 HOH A 108 508 86 HOH HOH . D 4 HOH A 109 509 64 HOH HOH . D 4 HOH A 110 510 38 HOH HOH . D 4 HOH A 111 511 120 HOH HOH . D 4 HOH A 112 512 99 HOH HOH . D 4 HOH A 113 513 32 HOH HOH . D 4 HOH A 114 514 119 HOH HOH . D 4 HOH A 115 515 66 HOH HOH . D 4 HOH A 116 516 34 HOH HOH . D 4 HOH A 117 517 68 HOH HOH . D 4 HOH A 118 518 112 HOH HOH . D 4 HOH A 119 519 155 HOH HOH . D 4 HOH A 120 520 24 HOH HOH . D 4 HOH A 121 521 141 HOH HOH . D 4 HOH A 122 522 75 HOH HOH . D 4 HOH A 123 523 23 HOH HOH . D 4 HOH A 124 524 100 HOH HOH . D 4 HOH A 125 525 161 HOH HOH . D 4 HOH A 126 526 25 HOH HOH . D 4 HOH A 127 527 118 HOH HOH . D 4 HOH A 128 528 165 HOH HOH . D 4 HOH A 129 529 41 HOH HOH . D 4 HOH A 130 530 160 HOH HOH . D 4 HOH A 131 531 63 HOH HOH . D 4 HOH A 132 532 104 HOH HOH . D 4 HOH A 133 533 31 HOH HOH . D 4 HOH A 134 534 139 HOH HOH . D 4 HOH A 135 535 37 HOH HOH . D 4 HOH A 136 536 151 HOH HOH . D 4 HOH A 137 537 135 HOH HOH . D 4 HOH A 138 538 121 HOH HOH . D 4 HOH A 139 539 109 HOH HOH . D 4 HOH A 140 540 148 HOH HOH . D 4 HOH A 141 541 90 HOH HOH . D 4 HOH A 142 542 92 HOH HOH . D 4 HOH A 143 543 89 HOH HOH . D 4 HOH A 144 544 59 HOH HOH . D 4 HOH A 145 545 162 HOH HOH . D 4 HOH A 146 546 107 HOH HOH . D 4 HOH A 147 547 138 HOH HOH . D 4 HOH A 148 548 85 HOH HOH . D 4 HOH A 149 549 94 HOH HOH . D 4 HOH A 150 550 98 HOH HOH . D 4 HOH A 151 551 158 HOH HOH . D 4 HOH A 152 552 78 HOH HOH . D 4 HOH A 153 553 137 HOH HOH . D 4 HOH A 154 554 132 HOH HOH . D 4 HOH A 155 555 83 HOH HOH . D 4 HOH A 156 556 154 HOH HOH . D 4 HOH A 157 557 123 HOH HOH . D 4 HOH A 158 558 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 5KS . . . C 3 20.653 -5.617 -0.055 0.9 11.56 ? C6 5KS 302 A 1 HETATM 2 C C5 5KS . . . C 3 20.06 -6.778 -0.834 0.9 10.89 ? C5 5KS 302 A 1 HETATM 3 S S1 5KS . . . C 3 21.178 -10.506 -0.581 0.9 21.39 ? S1 5KS 302 A 1 HETATM 4 C C2 5KS . . . C 3 18.77 -9.347 -1.027 0.9 16.15 ? C2 5KS 302 A 1 HETATM 5 N N3 5KS . . . C 3 14.44 -8.108 -1.748 0.9 23.51 ? N3 5KS 302 A 1 HETATM 6 C C4 5KS . . . C 3 18.561 -6.907 -0.623 0.9 12.52 ? C4 5KS 302 A 1 HETATM 7 C C5' 5KS . . . C 3 24.686 -10.453 -2.386 0.9 32.79 ? C5' 5KS 302 A 1 HETATM 8 C C4' 5KS . . . C 3 25.645 -10.672 -1.217 0.9 35.65 ? C4' 5KS 302 A 1 HETATM 9 N N3' 5KS . . . C 3 26.974 -11.125 2.831 0.9 41.56 ? N3' 5KS 302 A 1 HETATM 10 C C2' 5KS . . . C 3 23.714 -10.213 0.298 0.9 28.72 ? C2' 5KS 302 A 1 HETATM 11 N N1' 5KS . . . C 3 26.076 -9.988 1.149 0.9 36.13 ? N1' 5KS 302 A 1 HETATM 12 C C6' 5KS . . . C 3 25.095 -11.243 -3.63 0.9 35.57 ? C6' 5KS 302 A 1 HETATM 13 O O6 5KS . . . C 3 22.04 -5.478 -0.306 0.9 15.65 ? O6 5KS 302 A 1 HETATM 14 O O5 5KS . . . C 3 20.701 -7.995 -0.393 0.9 12.92 ? O5 5KS 302 A 1 HETATM 15 O O4 5KS . . . C 3 18.237 -7.077 0.773 0.9 12.65 ? O4 5KS 302 A 1 HETATM 16 C C3 5KS . . . C 3 18.037 -8.093 -1.433 0.9 14.09 ? C3 5KS 302 A 1 HETATM 17 N N1 5KS . . . C 3 16.589 -8.208 -1.216 0.9 16.73 ? N1 5KS 302 A 1 HETATM 18 N N2 5KS . . . C 3 15.728 -7.942 -2.286 0.9 18.18 ? N2 5KS 302 A 1 HETATM 19 C CB 5KS . . . C 3 14.615 -8.454 -0.461 0.9 19.1 ? CB 5KS 302 A 1 HETATM 20 C CA 5KS . . . C 3 15.937 -8.5 -0.114 0.9 18.35 ? CA 5KS 302 A 1 HETATM 21 C CD 5KS . . . C 3 13.385 -8.651 0.344 0.9 21.6 ? CD 5KS 302 A 1 HETATM 22 C CI 5KS . . . C 3 13.503 -8.515 1.711 0.9 18.54 ? CI 5KS 302 A 1 HETATM 23 C CH 5KS . . . C 3 12.387 -8.68 2.516 0.9 22.25 ? CH 5KS 302 A 1 HETATM 24 F F 5KS . . . C 3 10.063 -9.07 2.762 0.9 30.93 ? F 5KS 302 A 1 HETATM 25 C CG 5KS . . . C 3 11.152 -8.934 1.949 0.9 24.13 ? CG 5KS 302 A 1 HETATM 26 C CF 5KS . . . C 3 11.023 -9.041 0.569 0.9 26.2 ? CF 5KS 302 A 1 HETATM 27 C CE 5KS . . . C 3 12.143 -8.888 -0.245 0.9 23.8 ? CE 5KS 302 A 1 HETATM 28 O O2 5KS . . . C 3 18.381 -10.431 -1.88 0.9 21.11 ? O2 5KS 302 A 1 HETATM 29 C C1 5KS . . . C 3 20.265 -9.115 -1.171 0.9 12.96 ? C1 5KS 302 A 1 HETATM 30 C C1' 5KS . . . C 3 22.833 -10.014 -0.924 0.9 22.52 ? C1' 5KS 302 A 1 HETATM 31 O O5' 5KS . . . C 3 23.361 -10.823 -2.005 0.9 27.93 ? O5' 5KS 302 A 1 HETATM 32 O O6' 5KS . . . C 3 24.313 -10.788 -4.748 0.9 39.37 ? O6' 5KS 302 A 1 HETATM 33 O O2' 5KS . . . C 3 23.171 -9.455 1.392 0.9 16.99 ? O2' 5KS 302 A 1 HETATM 34 C C3' 5KS . . . C 3 25.168 -9.835 -0.03 0.9 28.94 ? C3' 5KS 302 A 1 HETATM 35 O O4' 5KS . . . C 3 25.715 -12.073 -0.886 0.9 34.04 ? O4' 5KS 302 A 1 HETATM 36 N N2' 5KS . . . C 3 26.065 -11.235 1.772 0.9 37.49 ? N2' 5KS 302 A 1 HETATM 37 C CB' 5KS . . . C 3 27.491 -9.871 2.827 0.9 45.59 ? CB' 5KS 302 A 1 HETATM 38 C CA' 5KS . . . C 3 26.921 -9.163 1.774 0.9 38.96 ? CA' 5KS 302 A 1 HETATM 39 C CD' 5KS . . . C 3 28.475 -9.359 3.832 0.9 52.7 ? CD' 5KS 302 A 1 HETATM 40 C CI' 5KS . . . C 3 28.623 -7.986 4.042 0.9 55.61 ? CI' 5KS 302 A 1 HETATM 41 C CH' 5KS . . . C 3 29.524 -7.512 4.996 0.9 58.26 ? CH' 5KS 302 A 1 HETATM 42 C CG' 5KS . . . C 3 30.277 -8.407 5.753 0.9 60.15 ? CG' 5KS 302 A 1 HETATM 43 C CF' 5KS . . . C 3 30.122 -9.778 5.557 0.9 58.81 ? CF' 5KS 302 A 1 HETATM 44 C CE' 5KS . . . C 3 29.219 -10.252 4.606 0.9 56.07 ? CE' 5KS 302 A 1 HETATM 45 F F' 5KS . . . C 3 31.161 -7.932 6.681 0.9 65.46 ? F' 5KS 302 A 1 # _model_server_stats.io_time_ms 127 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 45 #