data_5E8F # _model_server_result.job_id xjcNjOUxsv10tdm_mhzO7w _model_server_result.datetime_utc '2024-11-19 08:37:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 5E8F # _exptl.entry_id 5E8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.484 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'GERAN-8-YL GERAN' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E8F _cell.length_a 77.71 _cell.length_b 81.43 _cell.length_c 118.53 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG CMT 5 D CMT 855 1_555 E C1 GER . D GER 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale2 D C THR 4 E THR 854 1_555 D N CMT 5 E CMT 855 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? covale ? covale3 D SG CMT 5 E CMT 855 1_555 F C1 GER . E GER 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? # _chem_comp.formula 'C20 H34' _chem_comp.formula_weight 274.484 _chem_comp.id GER _chem_comp.mon_nstd_flag . _chem_comp.name 'GERAN-8-YL GERAN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GER sing 99 n n C1 H11 GER sing 100 n n C1 H12 GER sing 101 n n C1 H13 GER sing 102 n n C2 C3 GER doub 103 e n C2 H21 GER sing 104 n n C3 C4 GER sing 105 n n C3 C5 GER sing 106 n n C4 H41 GER sing 107 n n C4 H42 GER sing 108 n n C4 H43 GER sing 109 n n C5 C6 GER sing 110 n n C5 H51 GER sing 111 n n C5 H52 GER sing 112 n n C6 C7 GER sing 113 n n C6 H61 GER sing 114 n n C6 H62 GER sing 115 n n C7 C8 GER doub 116 e n C7 H71 GER sing 117 n n C8 C9 GER sing 118 n n C8 C10 GER sing 119 n n C9 H91 GER sing 120 n n C9 H92 GER sing 121 n n C9 H93 GER sing 122 n n C10 C11 GER sing 123 n n C10 H101 GER sing 124 n n C10 H102 GER sing 125 n n C11 C12 GER sing 126 n n C11 H111 GER sing 127 n n C11 H112 GER sing 128 n n C12 C13 GER doub 129 e n C12 H121 GER sing 130 n n C13 C14 GER sing 131 n n C13 C15 GER sing 132 n n C14 H141 GER sing 133 n n C14 H142 GER sing 134 n n C14 H143 GER sing 135 n n C15 C16 GER sing 136 n n C15 H151 GER sing 137 n n C15 H152 GER sing 138 n n C16 C17 GER sing 139 n n C16 H161 GER sing 140 n n C16 H162 GER sing 141 n n C17 C18 GER doub 142 n n C17 H171 GER sing 143 n n C18 C19 GER sing 144 n n C18 C20 GER sing 145 n n C19 H191 GER sing 146 n n C19 H192 GER sing 147 n n C19 H193 GER sing 148 n n C20 H201 GER sing 149 n n C20 H202 GER sing 150 n n C20 H203 GER sing 151 n n # _atom_sites.entry_id 5E8F _atom_sites.fract_transf_matrix[1][1] 0.012868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GER D 1 901 856 GER DRG . F 3 GER E 1 901 856 GER DRG . G 4 HOH A 1 301 10 HOH HOH . G 4 HOH A 2 302 8 HOH HOH . G 4 HOH A 3 303 34 HOH HOH . G 4 HOH A 4 304 15 HOH HOH . G 4 HOH A 5 305 81 HOH HOH . G 4 HOH A 6 306 69 HOH HOH . G 4 HOH A 7 307 17 HOH HOH . G 4 HOH A 8 308 68 HOH HOH . G 4 HOH A 9 309 14 HOH HOH . G 4 HOH A 10 310 79 HOH HOH . G 4 HOH A 11 311 146 HOH HOH . G 4 HOH A 12 312 20 HOH HOH . G 4 HOH A 13 313 11 HOH HOH . G 4 HOH A 14 314 31 HOH HOH . G 4 HOH A 15 315 147 HOH HOH . G 4 HOH A 16 316 80 HOH HOH . G 4 HOH A 17 317 30 HOH HOH . G 4 HOH A 18 318 148 HOH HOH . G 4 HOH A 19 319 71 HOH HOH . G 4 HOH A 20 320 3 HOH HOH . G 4 HOH A 21 321 157 HOH HOH . G 4 HOH A 22 322 21 HOH HOH . G 4 HOH A 23 323 24 HOH HOH . G 4 HOH A 24 324 16 HOH HOH . G 4 HOH A 25 325 134 HOH HOH . G 4 HOH A 26 326 22 HOH HOH . G 4 HOH A 27 327 19 HOH HOH . G 4 HOH A 28 328 28 HOH HOH . G 4 HOH A 29 329 33 HOH HOH . G 4 HOH A 30 330 40 HOH HOH . G 4 HOH A 31 331 23 HOH HOH . G 4 HOH A 32 332 7 HOH HOH . G 4 HOH A 33 333 25 HOH HOH . G 4 HOH A 34 334 78 HOH HOH . G 4 HOH A 35 335 12 HOH HOH . G 4 HOH A 36 336 155 HOH HOH . G 4 HOH A 37 337 35 HOH HOH . G 4 HOH A 38 338 150 HOH HOH . G 4 HOH A 39 339 32 HOH HOH . G 4 HOH A 40 340 67 HOH HOH . G 4 HOH A 41 341 75 HOH HOH . G 4 HOH A 42 342 149 HOH HOH . G 4 HOH A 43 343 29 HOH HOH . G 4 HOH A 44 344 70 HOH HOH . G 4 HOH A 45 345 73 HOH HOH . G 4 HOH A 46 346 72 HOH HOH . G 4 HOH A 47 347 2 HOH HOH . G 4 HOH A 48 348 77 HOH HOH . G 4 HOH A 49 349 154 HOH HOH . G 4 HOH A 50 350 156 HOH HOH . G 4 HOH A 51 351 58 HOH HOH . G 4 HOH A 52 352 39 HOH HOH . G 4 HOH A 53 353 74 HOH HOH . H 4 HOH C 1 201 42 HOH HOH . H 4 HOH C 2 202 128 HOH HOH . H 4 HOH C 3 203 43 HOH HOH . H 4 HOH C 4 204 46 HOH HOH . H 4 HOH C 5 205 47 HOH HOH . H 4 HOH C 6 206 5 HOH HOH . H 4 HOH C 7 207 133 HOH HOH . H 4 HOH C 8 208 9 HOH HOH . H 4 HOH C 9 209 65 HOH HOH . H 4 HOH C 10 210 131 HOH HOH . H 4 HOH C 11 211 56 HOH HOH . H 4 HOH C 12 212 4 HOH HOH . H 4 HOH C 13 213 27 HOH HOH . H 4 HOH C 14 214 158 HOH HOH . H 4 HOH C 15 215 142 HOH HOH . H 4 HOH C 16 216 59 HOH HOH . H 4 HOH C 17 217 138 HOH HOH . H 4 HOH C 18 218 63 HOH HOH . H 4 HOH C 19 219 140 HOH HOH . H 4 HOH C 20 220 136 HOH HOH . H 4 HOH C 21 221 38 HOH HOH . H 4 HOH C 22 222 51 HOH HOH . H 4 HOH C 23 223 61 HOH HOH . H 4 HOH C 24 224 60 HOH HOH . H 4 HOH C 25 225 45 HOH HOH . H 4 HOH C 26 226 153 HOH HOH . H 4 HOH C 27 227 52 HOH HOH . H 4 HOH C 28 228 37 HOH HOH . H 4 HOH C 29 229 57 HOH HOH . H 4 HOH C 30 230 145 HOH HOH . H 4 HOH C 31 231 50 HOH HOH . H 4 HOH C 32 232 130 HOH HOH . H 4 HOH C 33 233 66 HOH HOH . H 4 HOH C 34 234 82 HOH HOH . H 4 HOH C 35 235 62 HOH HOH . H 4 HOH C 36 236 26 HOH HOH . H 4 HOH C 37 237 49 HOH HOH . H 4 HOH C 38 238 152 HOH HOH . H 4 HOH C 39 239 137 HOH HOH . H 4 HOH C 40 240 36 HOH HOH . H 4 HOH C 41 241 127 HOH HOH . H 4 HOH C 42 242 83 HOH HOH . H 4 HOH C 43 243 135 HOH HOH . H 4 HOH C 44 244 53 HOH HOH . H 4 HOH C 45 245 144 HOH HOH . H 4 HOH C 46 246 54 HOH HOH . H 4 HOH C 47 247 151 HOH HOH . H 4 HOH C 48 248 97 HOH HOH . H 4 HOH C 49 249 48 HOH HOH . H 4 HOH C 50 250 143 HOH HOH . H 4 HOH C 51 251 55 HOH HOH . H 4 HOH C 52 252 76 HOH HOH . H 4 HOH C 53 253 84 HOH HOH . H 4 HOH C 54 254 159 HOH HOH . I 4 HOH E 1 1001 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GER . . . F 3 -16.415 -41.229 -17.494 1 29.08 ? C1 GER 901 E 1 HETATM 2 C C2 GER . . . F 3 -15.72 -40.722 -18.73 1 33.28 ? C2 GER 901 E 1 HETATM 3 C C3 GER . . . F 3 -14.215 -40.607 -18.822 1 31.1 ? C3 GER 901 E 1 HETATM 4 C C4 GER . . . F 3 -13.315 -40.886 -17.631 1 34.92 ? C4 GER 901 E 1 HETATM 5 C C5 GER . . . F 3 -13.654 -40.169 -20.159 1 31.38 ? C5 GER 901 E 1 HETATM 6 C C6 GER . . . F 3 -13.374 -38.687 -20.151 1 29.59 ? C6 GER 901 E 1 HETATM 7 C C7 GER . . . F 3 -13.204 -38.359 -21.605 1 36.55 ? C7 GER 901 E 1 HETATM 8 C C8 GER . . . F 3 -12.542 -37.078 -22.042 1 35.85 ? C8 GER 901 E 1 HETATM 9 C C9 GER . . . F 3 -12.103 -35.972 -21.041 1 33.72 ? C9 GER 901 E 1 HETATM 10 C C10 GER . . . F 3 -12.15 -37.079 -23.488 1 42.06 ? C10 GER 901 E 1 HETATM 11 C C11 GER . . . F 3 -12.573 -35.886 -24.251 1 47.79 ? C11 GER 901 E 1 HETATM 12 C C12 GER . . . F 3 -13.994 -36.021 -24.618 1 49.59 ? C12 GER 901 E 1 HETATM 13 C C13 GER . . . F 3 -14.532 -35.537 -25.95 1 42.69 ? C13 GER 901 E 1 HETATM 14 C C14 GER . . . F 3 -16.04 -35.618 -25.992 1 40.69 ? C14 GER 901 E 1 HETATM 15 C C15 GER . . . F 3 -13.648 -34.949 -27.1 1 42.98 ? C15 GER 901 E 1 HETATM 16 C C16 GER . . . F 3 -14.526 -34.017 -27.936 1 40.22 ? C16 GER 901 E 1 HETATM 17 C C17 GER . . . F 3 -13.906 -33.745 -29.299 1 39.34 ? C17 GER 901 E 1 HETATM 18 C C18 GER . . . F 3 -14.844 -33.242 -30.424 1 31.99 ? C18 GER 901 E 1 HETATM 19 C C19 GER . . . F 3 -16.282 -32.876 -30.135 1 38.9 ? C19 GER 901 E 1 HETATM 20 C C20 GER . . . F 3 -14.394 -33.143 -31.838 1 40.21 ? C20 GER 901 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #