data_5E8J
#
_model_server_result.job_id            7x9pHVDCdnMqhcHP8rQGdw 
_model_server_result.datetime_utc      '2024-11-19 23:04:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    5E8J 
#
_exptl.entry_id    5E8J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.06 
_cell.angle_beta          92.41 
_cell.angle_gamma         115.41 
_cell.entry_id            5E8J 
_cell.length_a            49.147 
_cell.length_b            50.487 
_cell.length_c            84.579 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,H,J 1 1 
B,D,G,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5E8J 
_atom_sites.fract_transf_matrix[1][1]    0.020347 
_atom_sites.fract_transf_matrix[1][2]    0.009668 
_atom_sites.fract_transf_matrix[1][3]    0.001062 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021929 
_atom_sites.fract_transf_matrix[2][3]    0.000466 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011836 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 501 1 GOL GOL . 
F 4 SAH A 1 502 1 SAH SAH . 
G 4 SAH B 1 501 2 SAH SAH . 
H 5 HOH A 1 601 191 HOH HOH . 
H 5 HOH A 2 602 156 HOH HOH . 
H 5 HOH A 3 603 21 HOH HOH . 
H 5 HOH A 4 604 263 HOH HOH . 
H 5 HOH A 5 605 23 HOH HOH . 
H 5 HOH A 6 606 187 HOH HOH . 
H 5 HOH A 7 607 67 HOH HOH . 
H 5 HOH A 8 608 57 HOH HOH . 
H 5 HOH A 9 609 128 HOH HOH . 
H 5 HOH A 10 610 8 HOH HOH . 
H 5 HOH A 11 611 77 HOH HOH . 
H 5 HOH A 12 612 186 HOH HOH . 
H 5 HOH A 13 613 73 HOH HOH . 
H 5 HOH A 14 614 212 HOH HOH . 
H 5 HOH A 15 615 257 HOH HOH . 
H 5 HOH A 16 616 14 HOH HOH . 
H 5 HOH A 17 617 254 HOH HOH . 
H 5 HOH A 18 618 39 HOH HOH . 
H 5 HOH A 19 619 55 HOH HOH . 
H 5 HOH A 20 620 304 HOH HOH . 
H 5 HOH A 21 621 76 HOH HOH . 
H 5 HOH A 22 622 120 HOH HOH . 
H 5 HOH A 23 623 26 HOH HOH . 
H 5 HOH A 24 624 168 HOH HOH . 
H 5 HOH A 25 625 59 HOH HOH . 
H 5 HOH A 26 626 170 HOH HOH . 
H 5 HOH A 27 627 54 HOH HOH . 
H 5 HOH A 28 628 202 HOH HOH . 
H 5 HOH A 29 629 199 HOH HOH . 
H 5 HOH A 30 630 122 HOH HOH . 
H 5 HOH A 31 631 18 HOH HOH . 
H 5 HOH A 32 632 24 HOH HOH . 
H 5 HOH A 33 633 133 HOH HOH . 
H 5 HOH A 34 634 100 HOH HOH . 
H 5 HOH A 35 635 29 HOH HOH . 
H 5 HOH A 36 636 111 HOH HOH . 
H 5 HOH A 37 637 5 HOH HOH . 
H 5 HOH A 38 638 210 HOH HOH . 
H 5 HOH A 39 639 252 HOH HOH . 
H 5 HOH A 40 640 306 HOH HOH . 
H 5 HOH A 41 641 119 HOH HOH . 
H 5 HOH A 42 642 282 HOH HOH . 
H 5 HOH A 43 643 38 HOH HOH . 
H 5 HOH A 44 644 297 HOH HOH . 
H 5 HOH A 45 645 82 HOH HOH . 
H 5 HOH A 46 646 235 HOH HOH . 
H 5 HOH A 47 647 4 HOH HOH . 
H 5 HOH A 48 648 3 HOH HOH . 
H 5 HOH A 49 649 56 HOH HOH . 
H 5 HOH A 50 650 104 HOH HOH . 
H 5 HOH A 51 651 19 HOH HOH . 
H 5 HOH A 52 652 223 HOH HOH . 
H 5 HOH A 53 653 40 HOH HOH . 
H 5 HOH A 54 654 164 HOH HOH . 
H 5 HOH A 55 655 106 HOH HOH . 
H 5 HOH A 56 656 239 HOH HOH . 
H 5 HOH A 57 657 60 HOH HOH . 
H 5 HOH A 58 658 146 HOH HOH . 
H 5 HOH A 59 659 256 HOH HOH . 
H 5 HOH A 60 660 273 HOH HOH . 
H 5 HOH A 61 661 214 HOH HOH . 
H 5 HOH A 62 662 295 HOH HOH . 
H 5 HOH A 63 663 272 HOH HOH . 
H 5 HOH A 64 664 283 HOH HOH . 
H 5 HOH A 65 665 203 HOH HOH . 
H 5 HOH A 66 666 163 HOH HOH . 
H 5 HOH A 67 667 72 HOH HOH . 
H 5 HOH A 68 668 229 HOH HOH . 
H 5 HOH A 69 669 2 HOH HOH . 
H 5 HOH A 70 670 258 HOH HOH . 
H 5 HOH A 71 671 143 HOH HOH . 
H 5 HOH A 72 672 260 HOH HOH . 
H 5 HOH A 73 673 208 HOH HOH . 
H 5 HOH A 74 674 290 HOH HOH . 
H 5 HOH A 75 675 96 HOH HOH . 
H 5 HOH A 76 676 250 HOH HOH . 
H 5 HOH A 77 677 268 HOH HOH . 
H 5 HOH A 78 678 194 HOH HOH . 
H 5 HOH A 79 679 300 HOH HOH . 
H 5 HOH A 80 680 255 HOH HOH . 
H 5 HOH A 81 681 244 HOH HOH . 
H 5 HOH A 82 682 298 HOH HOH . 
H 5 HOH A 83 683 237 HOH HOH . 
H 5 HOH A 84 684 157 HOH HOH . 
H 5 HOH A 85 685 303 HOH HOH . 
H 5 HOH A 86 686 138 HOH HOH . 
H 5 HOH A 87 687 294 HOH HOH . 
H 5 HOH A 88 688 162 HOH HOH . 
H 5 HOH A 89 689 113 HOH HOH . 
H 5 HOH A 90 690 200 HOH HOH . 
H 5 HOH A 91 691 299 HOH HOH . 
H 5 HOH A 92 692 209 HOH HOH . 
H 5 HOH A 93 693 305 HOH HOH . 
H 5 HOH A 94 694 281 HOH HOH . 
H 5 HOH A 95 695 193 HOH HOH . 
H 5 HOH A 96 696 185 HOH HOH . 
H 5 HOH A 97 697 102 HOH HOH . 
H 5 HOH A 98 698 166 HOH HOH . 
H 5 HOH A 99 699 296 HOH HOH . 
H 5 HOH A 100 700 271 HOH HOH . 
H 5 HOH A 101 701 224 HOH HOH . 
H 5 HOH A 102 702 184 HOH HOH . 
I 5 HOH B 1 601 134 HOH HOH . 
I 5 HOH B 2 602 13 HOH HOH . 
I 5 HOH B 3 603 36 HOH HOH . 
I 5 HOH B 4 604 6 HOH HOH . 
I 5 HOH B 5 605 247 HOH HOH . 
I 5 HOH B 6 606 222 HOH HOH . 
I 5 HOH B 7 607 179 HOH HOH . 
I 5 HOH B 8 608 130 HOH HOH . 
I 5 HOH B 9 609 66 HOH HOH . 
I 5 HOH B 10 610 172 HOH HOH . 
I 5 HOH B 11 611 107 HOH HOH . 
I 5 HOH B 12 612 110 HOH HOH . 
I 5 HOH B 13 613 126 HOH HOH . 
I 5 HOH B 14 614 62 HOH HOH . 
I 5 HOH B 15 615 1 HOH HOH . 
I 5 HOH B 16 616 101 HOH HOH . 
I 5 HOH B 17 617 151 HOH HOH . 
I 5 HOH B 18 618 45 HOH HOH . 
I 5 HOH B 19 619 232 HOH HOH . 
I 5 HOH B 20 620 30 HOH HOH . 
I 5 HOH B 21 621 171 HOH HOH . 
I 5 HOH B 22 622 48 HOH HOH . 
I 5 HOH B 23 623 68 HOH HOH . 
I 5 HOH B 24 624 53 HOH HOH . 
I 5 HOH B 25 625 64 HOH HOH . 
I 5 HOH B 26 626 88 HOH HOH . 
I 5 HOH B 27 627 129 HOH HOH . 
I 5 HOH B 28 628 75 HOH HOH . 
I 5 HOH B 29 629 7 HOH HOH . 
I 5 HOH B 30 630 177 HOH HOH . 
I 5 HOH B 31 631 15 HOH HOH . 
I 5 HOH B 32 632 248 HOH HOH . 
I 5 HOH B 33 633 22 HOH HOH . 
I 5 HOH B 34 634 221 HOH HOH . 
I 5 HOH B 35 635 93 HOH HOH . 
I 5 HOH B 36 636 16 HOH HOH . 
I 5 HOH B 37 637 51 HOH HOH . 
I 5 HOH B 38 638 10 HOH HOH . 
I 5 HOH B 39 639 207 HOH HOH . 
I 5 HOH B 40 640 9 HOH HOH . 
I 5 HOH B 41 641 284 HOH HOH . 
I 5 HOH B 42 642 79 HOH HOH . 
I 5 HOH B 43 643 20 HOH HOH . 
I 5 HOH B 44 644 37 HOH HOH . 
I 5 HOH B 45 645 148 HOH HOH . 
I 5 HOH B 46 646 253 HOH HOH . 
I 5 HOH B 47 647 74 HOH HOH . 
I 5 HOH B 48 648 279 HOH HOH . 
I 5 HOH B 49 649 301 HOH HOH . 
I 5 HOH B 50 650 34 HOH HOH . 
I 5 HOH B 51 651 180 HOH HOH . 
I 5 HOH B 52 652 141 HOH HOH . 
I 5 HOH B 53 653 144 HOH HOH . 
I 5 HOH B 54 654 35 HOH HOH . 
I 5 HOH B 55 655 28 HOH HOH . 
I 5 HOH B 56 656 242 HOH HOH . 
I 5 HOH B 57 657 105 HOH HOH . 
I 5 HOH B 58 658 86 HOH HOH . 
I 5 HOH B 59 659 169 HOH HOH . 
I 5 HOH B 60 660 136 HOH HOH . 
I 5 HOH B 61 661 69 HOH HOH . 
I 5 HOH B 62 662 44 HOH HOH . 
I 5 HOH B 63 663 264 HOH HOH . 
I 5 HOH B 64 664 280 HOH HOH . 
I 5 HOH B 65 665 289 HOH HOH . 
I 5 HOH B 66 666 277 HOH HOH . 
I 5 HOH B 67 667 285 HOH HOH . 
I 5 HOH B 68 668 230 HOH HOH . 
I 5 HOH B 69 669 286 HOH HOH . 
I 5 HOH B 70 670 70 HOH HOH . 
I 5 HOH B 71 671 293 HOH HOH . 
I 5 HOH B 72 672 204 HOH HOH . 
I 5 HOH B 73 673 236 HOH HOH . 
I 5 HOH B 74 674 259 HOH HOH . 
I 5 HOH B 75 675 245 HOH HOH . 
I 5 HOH B 76 676 243 HOH HOH . 
I 5 HOH B 77 677 176 HOH HOH . 
I 5 HOH B 78 678 275 HOH HOH . 
J 5 HOH C 1 101 115 HOH HOH . 
J 5 HOH C 2 102 167 HOH HOH . 
J 5 HOH C 3 103 109 HOH HOH . 
J 5 HOH C 4 104 42 HOH HOH . 
J 5 HOH C 5 105 266 HOH HOH . 
J 5 HOH C 6 106 165 HOH HOH . 
J 5 HOH C 7 107 58 HOH HOH . 
J 5 HOH C 8 108 90 HOH HOH . 
J 5 HOH C 9 109 32 HOH HOH . 
J 5 HOH C 10 110 17 HOH HOH . 
J 5 HOH C 11 111 41 HOH HOH . 
J 5 HOH C 12 112 270 HOH HOH . 
J 5 HOH C 13 113 27 HOH HOH . 
J 5 HOH C 14 114 98 HOH HOH . 
J 5 HOH C 15 115 227 HOH HOH . 
J 5 HOH C 16 116 291 HOH HOH . 
J 5 HOH C 17 117 173 HOH HOH . 
J 5 HOH C 18 118 174 HOH HOH . 
J 5 HOH C 19 119 302 HOH HOH . 
J 5 HOH C 20 120 154 HOH HOH . 
K 5 HOH D 1 101 251 HOH HOH . 
K 5 HOH D 2 102 152 HOH HOH . 
K 5 HOH D 3 103 189 HOH HOH . 
K 5 HOH D 4 104 241 HOH HOH . 
K 5 HOH D 5 105 238 HOH HOH . 
K 5 HOH D 6 106 78 HOH HOH . 
K 5 HOH D 7 107 97 HOH HOH . 
K 5 HOH D 8 108 31 HOH HOH . 
K 5 HOH D 9 109 81 HOH HOH . 
K 5 HOH D 10 110 43 HOH HOH . 
K 5 HOH D 11 111 265 HOH HOH . 
K 5 HOH D 12 112 33 HOH HOH . 
K 5 HOH D 13 113 50 HOH HOH . 
K 5 HOH D 14 114 11 HOH HOH . 
K 5 HOH D 15 115 61 HOH HOH . 
K 5 HOH D 16 116 25 HOH HOH . 
K 5 HOH D 17 117 71 HOH HOH . 
K 5 HOH D 18 118 161 HOH HOH . 
K 5 HOH D 19 119 287 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 0.814 -7.486 -11.086 1 44.91 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . E 3 0.389 -8.285 -10.006 1 47.91 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . E 3 1.349 -6.162 -10.556 1 42.54 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . E 3 0.262 -5.305 -10.283 1 45.18 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . E 3 2.139 -6.406 -9.275 1 38.67 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . E 3 3.509 -6.163 -9.508 1 35.79 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#