data_5E8N
#
_model_server_result.job_id            uYzFbonuuP2JalHWgaL5eg 
_model_server_result.datetime_utc      '2024-11-25 14:11:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e8n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":101}' 
#
_entry.id    5E8N 
#
_exptl.entry_id    5E8N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.26 
_cell.angle_gamma         90 
_cell.entry_id            5E8N 
_cell.length_a            92.51 
_cell.length_b            124.25 
_cell.length_c            99.29 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E8N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
PISA trimeric 3 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,M,O,P,Q 1 1 
D,E,F,R,S,T 2 1 
G,H,I,N,U,V 3 1 
J,K,L,W,X,Y 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf6 E SG CYS 25 E CYS 25 1_555 E SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf7 G SG CYS 101 G CYS 101 1_555 G SG CYS 164 G CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 G SG CYS 203 G CYS 203 1_555 G SG CYS 259 G CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 H SG CYS 25 H CYS 25 1_555 H SG CYS 80 H CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf10 J SG CYS 101 J CYS 101 1_555 J SG CYS 164 J CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf11 J SG CYS 203 J CYS 203 1_555 J SG CYS 259 J CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf12 K SG CYS 25 K CYS 25 1_555 K SG CYS 80 K CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5E8N 
_atom_sites.fract_transf_matrix[1][1]    0.01081 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002547 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008048 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 GOL B 1 101 1 GOL GOL . 
N 5 SO4 G 1 301 2 SO4 SO4 . 
O 6 HOH A 1 301 28 HOH HOH . 
O 6 HOH A 2 302 100 HOH HOH . 
O 6 HOH A 3 303 101 HOH HOH . 
O 6 HOH A 4 304 104 HOH HOH . 
O 6 HOH A 5 305 98 HOH HOH . 
O 6 HOH A 6 306 62 HOH HOH . 
O 6 HOH A 7 307 59 HOH HOH . 
O 6 HOH A 8 308 107 HOH HOH . 
O 6 HOH A 9 309 7 HOH HOH . 
O 6 HOH A 10 310 46 HOH HOH . 
O 6 HOH A 11 311 14 HOH HOH . 
O 6 HOH A 12 312 42 HOH HOH . 
O 6 HOH A 13 313 16 HOH HOH . 
O 6 HOH A 14 314 36 HOH HOH . 
O 6 HOH A 15 315 57 HOH HOH . 
O 6 HOH A 16 316 110 HOH HOH . 
O 6 HOH A 17 317 121 HOH HOH . 
O 6 HOH A 18 318 35 HOH HOH . 
P 6 HOH B 1 201 131 HOH HOH . 
P 6 HOH B 2 202 120 HOH HOH . 
P 6 HOH B 3 203 102 HOH HOH . 
P 6 HOH B 4 204 60 HOH HOH . 
P 6 HOH B 5 205 27 HOH HOH . 
P 6 HOH B 6 206 45 HOH HOH . 
P 6 HOH B 7 207 87 HOH HOH . 
P 6 HOH B 8 208 70 HOH HOH . 
P 6 HOH B 9 209 78 HOH HOH . 
P 6 HOH B 10 210 54 HOH HOH . 
P 6 HOH B 11 211 92 HOH HOH . 
P 6 HOH B 12 212 61 HOH HOH . 
P 6 HOH B 13 213 50 HOH HOH . 
P 6 HOH B 14 214 94 HOH HOH . 
P 6 HOH B 15 215 74 HOH HOH . 
P 6 HOH B 16 216 38 HOH HOH . 
P 6 HOH B 17 217 18 HOH HOH . 
P 6 HOH B 18 218 91 HOH HOH . 
P 6 HOH B 19 219 19 HOH HOH . 
P 6 HOH B 20 220 63 HOH HOH . 
P 6 HOH B 21 221 51 HOH HOH . 
P 6 HOH B 22 222 73 HOH HOH . 
Q 6 HOH C 1 101 127 HOH HOH . 
Q 6 HOH C 2 102 40 HOH HOH . 
Q 6 HOH C 3 103 53 HOH HOH . 
Q 6 HOH C 4 104 123 HOH HOH . 
Q 6 HOH C 5 105 84 HOH HOH . 
R 6 HOH D 1 301 39 HOH HOH . 
R 6 HOH D 2 302 4 HOH HOH . 
R 6 HOH D 3 303 52 HOH HOH . 
R 6 HOH D 4 304 83 HOH HOH . 
R 6 HOH D 5 305 130 HOH HOH . 
R 6 HOH D 6 306 93 HOH HOH . 
R 6 HOH D 7 307 23 HOH HOH . 
R 6 HOH D 8 308 97 HOH HOH . 
R 6 HOH D 9 309 29 HOH HOH . 
R 6 HOH D 10 310 48 HOH HOH . 
R 6 HOH D 11 311 34 HOH HOH . 
R 6 HOH D 12 312 33 HOH HOH . 
R 6 HOH D 13 313 118 HOH HOH . 
R 6 HOH D 14 314 86 HOH HOH . 
R 6 HOH D 15 315 20 HOH HOH . 
R 6 HOH D 16 316 15 HOH HOH . 
R 6 HOH D 17 317 17 HOH HOH . 
R 6 HOH D 18 318 64 HOH HOH . 
R 6 HOH D 19 319 32 HOH HOH . 
R 6 HOH D 20 320 8 HOH HOH . 
R 6 HOH D 21 321 126 HOH HOH . 
R 6 HOH D 22 322 43 HOH HOH . 
S 6 HOH E 1 101 116 HOH HOH . 
S 6 HOH E 2 102 134 HOH HOH . 
S 6 HOH E 3 103 132 HOH HOH . 
S 6 HOH E 4 104 37 HOH HOH . 
S 6 HOH E 5 105 9 HOH HOH . 
S 6 HOH E 6 106 2 HOH HOH . 
S 6 HOH E 7 107 108 HOH HOH . 
S 6 HOH E 8 108 13 HOH HOH . 
S 6 HOH E 9 109 44 HOH HOH . 
S 6 HOH E 10 110 99 HOH HOH . 
S 6 HOH E 11 111 89 HOH HOH . 
S 6 HOH E 12 112 10 HOH HOH . 
S 6 HOH E 13 113 133 HOH HOH . 
T 6 HOH F 1 101 71 HOH HOH . 
T 6 HOH F 2 102 125 HOH HOH . 
T 6 HOH F 3 103 115 HOH HOH . 
T 6 HOH F 4 104 67 HOH HOH . 
T 6 HOH F 5 105 85 HOH HOH . 
U 6 HOH G 1 401 30 HOH HOH . 
U 6 HOH G 2 402 119 HOH HOH . 
U 6 HOH G 3 403 69 HOH HOH . 
U 6 HOH G 4 404 129 HOH HOH . 
U 6 HOH G 5 405 75 HOH HOH . 
U 6 HOH G 6 406 103 HOH HOH . 
U 6 HOH G 7 407 65 HOH HOH . 
U 6 HOH G 8 408 95 HOH HOH . 
U 6 HOH G 9 409 122 HOH HOH . 
U 6 HOH G 10 410 128 HOH HOH . 
V 6 HOH H 1 101 112 HOH HOH . 
V 6 HOH H 2 102 96 HOH HOH . 
V 6 HOH H 3 103 82 HOH HOH . 
V 6 HOH H 4 104 111 HOH HOH . 
V 6 HOH H 5 105 31 HOH HOH . 
V 6 HOH H 6 106 80 HOH HOH . 
V 6 HOH H 7 107 6 HOH HOH . 
V 6 HOH H 8 108 124 HOH HOH . 
V 6 HOH H 9 109 66 HOH HOH . 
V 6 HOH H 10 110 5 HOH HOH . 
V 6 HOH H 11 111 1 HOH HOH . 
V 6 HOH H 12 112 88 HOH HOH . 
V 6 HOH H 13 113 3 HOH HOH . 
V 6 HOH H 14 114 12 HOH HOH . 
V 6 HOH H 15 115 114 HOH HOH . 
V 6 HOH H 16 116 11 HOH HOH . 
V 6 HOH H 17 117 113 HOH HOH . 
W 6 HOH J 1 301 24 HOH HOH . 
W 6 HOH J 2 302 49 HOH HOH . 
W 6 HOH J 3 303 25 HOH HOH . 
W 6 HOH J 4 304 26 HOH HOH . 
W 6 HOH J 5 305 55 HOH HOH . 
W 6 HOH J 6 306 47 HOH HOH . 
W 6 HOH J 7 307 58 HOH HOH . 
W 6 HOH J 8 308 79 HOH HOH . 
W 6 HOH J 9 309 105 HOH HOH . 
W 6 HOH J 10 310 72 HOH HOH . 
W 6 HOH J 11 311 76 HOH HOH . 
W 6 HOH J 12 312 22 HOH HOH . 
W 6 HOH J 13 313 90 HOH HOH . 
W 6 HOH J 14 314 56 HOH HOH . 
W 6 HOH J 15 315 21 HOH HOH . 
W 6 HOH J 16 316 106 HOH HOH . 
W 6 HOH J 17 317 81 HOH HOH . 
W 6 HOH J 18 318 77 HOH HOH . 
W 6 HOH J 19 319 41 HOH HOH . 
W 6 HOH J 20 320 68 HOH HOH . 
X 6 HOH K 1 101 135 HOH HOH . 
Y 6 HOH L 1 101 117 HOH HOH . 
Y 6 HOH L 2 102 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 4 71.574 -21.985 125.574 1 70.77 ? C1 GOL 101 B 1 
HETATM 2 O O1 GOL . . . M 4 71.565 -22.18 124.178 1 66.78 ? O1 GOL 101 B 1 
HETATM 3 C C2 GOL . . . M 4 72.912 -22.456 126.124 1 71.87 ? C2 GOL 101 B 1 
HETATM 4 O O2 GOL . . . M 4 73.763 -22.723 125.032 1 73.76 ? O2 GOL 101 B 1 
HETATM 5 C C3 GOL . . . M 4 73.51 -21.371 127.016 1 69.81 ? C3 GOL 101 B 1 
HETATM 6 O O3 GOL . . . M 4 72.628 -21.089 128.086 1 68.57 ? O3 GOL 101 B 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#