data_5E8R
#
_model_server_result.job_id            jJAxPzFJLt2AuIVuNLYDOA 
_model_server_result.datetime_utc      '2024-11-26 02:51:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e8r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    5E8R 
#
_exptl.entry_id    5E8R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              287.4 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-methyl-N-({4-[4-(propan-2-yloxy)phenyl]-1H-pyrrol-3-yl}methyl)ethane-1,2-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5E8R 
_cell.length_a            100.244 
_cell.length_b            100.244 
_cell.length_c            89.868 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E8R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
_chem_comp.formula           'C17 H25 N3 O' 
_chem_comp.formula_weight    287.4 
_chem_comp.id                5L6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-methyl-N-({4-[4-(propan-2-yloxy)phenyl]-1H-pyrrol-3-yl}methyl)ethane-1,2-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 5L6 sing 1 n n 
C C1 5L6 sing 2 n n 
C1 O 5L6 sing 3 n n 
O C3 5L6 sing 4 n n 
C3 C4 5L6 doub 5 n y 
C3 C6 5L6 sing 6 n y 
C4 C5 5L6 sing 7 n y 
C6 C7 5L6 doub 8 n y 
C5 C8 5L6 doub 9 n y 
C7 C8 5L6 sing 10 n y 
C8 C9 5L6 sing 11 n n 
C10 C9 5L6 doub 12 n y 
C10 N 5L6 sing 13 n y 
C9 C12 5L6 sing 14 n y 
N C11 5L6 sing 15 n y 
C12 C11 5L6 doub 16 n y 
C12 C13 5L6 sing 17 n n 
C13 N1 5L6 sing 18 n n 
C14 N1 5L6 sing 19 n n 
N1 C15 5L6 sing 20 n n 
C16 C15 5L6 sing 21 n n 
C16 N2 5L6 sing 22 n n 
C4 H1 5L6 sing 23 n n 
C5 H2 5L6 sing 24 n n 
C6 H3 5L6 sing 25 n n 
C7 H5 5L6 sing 26 n n 
N2 H6 5L6 sing 27 n n 
N2 H7 5L6 sing 28 n n 
C10 H9 5L6 sing 29 n n 
C11 H10 5L6 sing 30 n n 
C13 H11 5L6 sing 31 n n 
C13 H12 5L6 sing 32 n n 
C14 H13 5L6 sing 33 n n 
C14 H14 5L6 sing 34 n n 
C14 H15 5L6 sing 35 n n 
C15 H16 5L6 sing 36 n n 
C15 H17 5L6 sing 37 n n 
C16 H18 5L6 sing 38 n n 
C16 H19 5L6 sing 39 n n 
N H20 5L6 sing 40 n n 
C1 H21 5L6 sing 41 n n 
C2 H22 5L6 sing 42 n n 
C2 H23 5L6 sing 43 n n 
C2 H24 5L6 sing 44 n n 
C H25 5L6 sing 45 n n 
C H26 5L6 sing 46 n n 
C H27 5L6 sing 47 n n 
#
_atom_sites.entry_id                     5E8R 
_atom_sites.fract_transf_matrix[1][1]    0.009976 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009976 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 1001 1001 SAH SAH . 
D 3 5L6 A 1 1002 1002 5L6 XXX . 
E 4 CL A 1 1003 3 CL CL . 
F 5 UNX A 1 1004 1001 UNX UNX . 
G 2 SAH B 1 1001 1001 SAH SAH . 
H 3 5L6 B 1 1002 1002 5L6 XXX . 
I 4 CL B 1 1003 1 CL CL . 
J 4 CL B 1 1004 2 CL CL . 
K 4 CL B 1 1005 4 CL CL . 
L 4 CL B 1 1006 5 CL CL . 
M 5 UNX B 1 1007 1000 UNX UNX . 
N 5 UNX B 1 1008 1002 UNX UNX . 
O 5 UNX B 1 1009 1003 UNX UNX . 
P 5 UNX B 1 1010 1004 UNX UNX . 
Q 5 UNX B 1 1011 1005 UNX UNX . 
R 5 UNX B 1 1012 1006 UNX UNX . 
S 5 UNX B 1 1013 1007 UNX UNX . 
T 5 UNX B 1 1014 1008 UNX UNX . 
U 6 HOH A 1 1101 46 HOH HOH . 
U 6 HOH A 2 1102 64 HOH HOH . 
U 6 HOH A 3 1103 47 HOH HOH . 
U 6 HOH A 4 1104 66 HOH HOH . 
U 6 HOH A 5 1105 19 HOH HOH . 
U 6 HOH A 6 1106 65 HOH HOH . 
U 6 HOH A 7 1107 2 HOH HOH . 
U 6 HOH A 8 1108 43 HOH HOH . 
U 6 HOH A 9 1109 53 HOH HOH . 
U 6 HOH A 10 1110 55 HOH HOH . 
U 6 HOH A 11 1111 18 HOH HOH . 
U 6 HOH A 12 1112 63 HOH HOH . 
U 6 HOH A 13 1113 39 HOH HOH . 
U 6 HOH A 14 1114 3 HOH HOH . 
U 6 HOH A 15 1115 4 HOH HOH . 
U 6 HOH A 16 1116 17 HOH HOH . 
U 6 HOH A 17 1117 16 HOH HOH . 
U 6 HOH A 18 1118 45 HOH HOH . 
U 6 HOH A 19 1119 5 HOH HOH . 
U 6 HOH A 20 1120 15 HOH HOH . 
U 6 HOH A 21 1121 13 HOH HOH . 
U 6 HOH A 22 1122 56 HOH HOH . 
U 6 HOH A 23 1123 44 HOH HOH . 
U 6 HOH A 24 1124 11 HOH HOH . 
U 6 HOH A 25 1125 40 HOH HOH . 
U 6 HOH A 26 1126 14 HOH HOH . 
U 6 HOH A 27 1127 54 HOH HOH . 
V 6 HOH B 1 1101 30 HOH HOH . 
V 6 HOH B 2 1102 7 HOH HOH . 
V 6 HOH B 3 1103 33 HOH HOH . 
V 6 HOH B 4 1104 50 HOH HOH . 
V 6 HOH B 5 1105 26 HOH HOH . 
V 6 HOH B 6 1106 1 HOH HOH . 
V 6 HOH B 7 1107 24 HOH HOH . 
V 6 HOH B 8 1108 58 HOH HOH . 
V 6 HOH B 9 1109 36 HOH HOH . 
V 6 HOH B 10 1110 60 HOH HOH . 
V 6 HOH B 11 1111 41 HOH HOH . 
V 6 HOH B 12 1112 12 HOH HOH . 
V 6 HOH B 13 1113 20 HOH HOH . 
V 6 HOH B 14 1114 25 HOH HOH . 
V 6 HOH B 15 1115 6 HOH HOH . 
V 6 HOH B 16 1116 21 HOH HOH . 
V 6 HOH B 17 1117 31 HOH HOH . 
V 6 HOH B 18 1118 37 HOH HOH . 
V 6 HOH B 19 1119 67 HOH HOH . 
V 6 HOH B 20 1120 10 HOH HOH . 
V 6 HOH B 21 1121 42 HOH HOH . 
V 6 HOH B 22 1122 38 HOH HOH . 
V 6 HOH B 23 1123 29 HOH HOH . 
V 6 HOH B 24 1124 23 HOH HOH . 
V 6 HOH B 25 1125 48 HOH HOH . 
V 6 HOH B 26 1126 27 HOH HOH . 
V 6 HOH B 27 1127 32 HOH HOH . 
V 6 HOH B 28 1128 22 HOH HOH . 
V 6 HOH B 29 1129 61 HOH HOH . 
V 6 HOH B 30 1130 59 HOH HOH . 
V 6 HOH B 31 1131 57 HOH HOH . 
V 6 HOH B 32 1132 49 HOH HOH . 
V 6 HOH B 33 1133 28 HOH HOH . 
V 6 HOH B 34 1134 62 HOH HOH . 
V 6 HOH B 35 1135 35 HOH HOH . 
V 6 HOH B 36 1136 52 HOH HOH . 
V 6 HOH B 37 1137 51 HOH HOH . 
V 6 HOH B 38 1138 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 5L6 . . . D 3 -31.831 16.028 -8.352 1 29.79 ? C4 5L6 1002 A 1 
HETATM 2 C C5 5L6 . . . D 3 -32.275 17.125 -7.639 1 29.9 ? C5 5L6 1002 A 1 
HETATM 3 C C6 5L6 . . . D 3 -29.562 16.617 -7.83 1 29.78 ? C6 5L6 1002 A 1 
HETATM 4 N N1 5L6 . . . D 3 -31.183 18.095 -2.735 1 27.16 ? N1 5L6 1002 A 1 
HETATM 5 C C7 5L6 . . . D 3 -30.014 17.716 -7.122 1 29.46 ? C7 5L6 1002 A 1 
HETATM 6 C C8 5L6 . . . D 3 -31.377 17.973 -6.999 1 29.44 ? C8 5L6 1002 A 1 
HETATM 7 N N2 5L6 . . . D 3 -28.215 16.91 -0.718 1 26.02 ? N2 5L6 1002 A 1 
HETATM 8 C C9 5L6 . . . D 3 -31.868 19.093 -6.159 1 29.07 ? C9 5L6 1002 A 1 
HETATM 9 C C10 5L6 . . . D 3 -32.817 20.004 -6.57 1 28.73 ? C10 5L6 1002 A 1 
HETATM 10 C C11 5L6 . . . D 3 -32.279 20.526 -4.464 1 28.48 ? C11 5L6 1002 A 1 
HETATM 11 C C12 5L6 . . . D 3 -31.502 19.432 -4.77 1 28.44 ? C12 5L6 1002 A 1 
HETATM 12 C C13 5L6 . . . D 3 -30.511 18.767 -3.852 1 27.87 ? C13 5L6 1002 A 1 
HETATM 13 C C14 5L6 . . . D 3 -31.993 16.948 -3.197 1 27 ? C14 5L6 1002 A 1 
HETATM 14 C C15 5L6 . . . D 3 -30.38 17.803 -1.534 1 26.29 ? C15 5L6 1002 A 1 
HETATM 15 C C16 5L6 . . . D 3 -29.129 17.002 -1.851 1 26.14 ? C16 5L6 1002 A 1 
HETATM 16 N N 5L6 . . . D 3 -33.055 20.862 -5.536 1 28.68 ? N 5L6 1002 A 1 
HETATM 17 C C3 5L6 . . . D 3 -30.474 15.77 -8.446 1 30.09 ? C3 5L6 1002 A 1 
HETATM 18 O O 5L6 . . . D 3 -30.175 14.64 -9.177 1 31.16 ? O 5L6 1002 A 1 
HETATM 19 C C1 5L6 . . . D 3 -28.968 14.597 -10.001 1 30.78 ? C1 5L6 1002 A 1 
HETATM 20 C C2 5L6 . . . D 3 -29.064 15.661 -11.052 1 30.73 ? C2 5L6 1002 A 1 
HETATM 21 C C 5L6 . . . D 3 -28.859 13.208 -10.566 1 30.92 ? C 5L6 1002 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#