data_5E8U
#
_model_server_result.job_id            JJ4K_RzXa0KfVKo-ykP7jw 
_model_server_result.datetime_utc      '2024-11-05 23:14:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e8u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    5E8U 
#
_exptl.entry_id    5E8U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5E8U 
_cell.length_a            41.6 
_cell.length_b            77.1 
_cell.length_c            89.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E8U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5E8U 
_atom_sites.fract_transf_matrix[1][1]    0.024038 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01297 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 601 1 GOL GOL . 
C 2 GOL A 1 602 2 GOL GOL . 
D 2 GOL A 1 603 3 GOL GOL . 
E 3 HOH A 1 701 94 HOH HOH . 
E 3 HOH A 2 702 66 HOH HOH . 
E 3 HOH A 3 703 19 HOH HOH . 
E 3 HOH A 4 704 52 HOH HOH . 
E 3 HOH A 5 705 9 HOH HOH . 
E 3 HOH A 6 706 17 HOH HOH . 
E 3 HOH A 7 707 30 HOH HOH . 
E 3 HOH A 8 708 73 HOH HOH . 
E 3 HOH A 9 709 27 HOH HOH . 
E 3 HOH A 10 710 68 HOH HOH . 
E 3 HOH A 11 711 46 HOH HOH . 
E 3 HOH A 12 712 116 HOH HOH . 
E 3 HOH A 13 713 7 HOH HOH . 
E 3 HOH A 14 714 2 HOH HOH . 
E 3 HOH A 15 715 1 HOH HOH . 
E 3 HOH A 16 716 95 HOH HOH . 
E 3 HOH A 17 717 3 HOH HOH . 
E 3 HOH A 18 718 50 HOH HOH . 
E 3 HOH A 19 719 48 HOH HOH . 
E 3 HOH A 20 720 70 HOH HOH . 
E 3 HOH A 21 721 111 HOH HOH . 
E 3 HOH A 22 722 31 HOH HOH . 
E 3 HOH A 23 723 79 HOH HOH . 
E 3 HOH A 24 724 32 HOH HOH . 
E 3 HOH A 25 725 42 HOH HOH . 
E 3 HOH A 26 726 83 HOH HOH . 
E 3 HOH A 27 727 96 HOH HOH . 
E 3 HOH A 28 728 87 HOH HOH . 
E 3 HOH A 29 729 49 HOH HOH . 
E 3 HOH A 30 730 65 HOH HOH . 
E 3 HOH A 31 731 35 HOH HOH . 
E 3 HOH A 32 732 97 HOH HOH . 
E 3 HOH A 33 733 58 HOH HOH . 
E 3 HOH A 34 734 5 HOH HOH . 
E 3 HOH A 35 735 44 HOH HOH . 
E 3 HOH A 36 736 84 HOH HOH . 
E 3 HOH A 37 737 15 HOH HOH . 
E 3 HOH A 38 738 55 HOH HOH . 
E 3 HOH A 39 739 120 HOH HOH . 
E 3 HOH A 40 740 39 HOH HOH . 
E 3 HOH A 41 741 45 HOH HOH . 
E 3 HOH A 42 742 100 HOH HOH . 
E 3 HOH A 43 743 4 HOH HOH . 
E 3 HOH A 44 744 122 HOH HOH . 
E 3 HOH A 45 745 105 HOH HOH . 
E 3 HOH A 46 746 123 HOH HOH . 
E 3 HOH A 47 747 16 HOH HOH . 
E 3 HOH A 48 748 28 HOH HOH . 
E 3 HOH A 49 749 6 HOH HOH . 
E 3 HOH A 50 750 18 HOH HOH . 
E 3 HOH A 51 751 85 HOH HOH . 
E 3 HOH A 52 752 25 HOH HOH . 
E 3 HOH A 53 753 115 HOH HOH . 
E 3 HOH A 54 754 88 HOH HOH . 
E 3 HOH A 55 755 99 HOH HOH . 
E 3 HOH A 56 756 34 HOH HOH . 
E 3 HOH A 57 757 20 HOH HOH . 
E 3 HOH A 58 758 75 HOH HOH . 
E 3 HOH A 59 759 101 HOH HOH . 
E 3 HOH A 60 760 86 HOH HOH . 
E 3 HOH A 61 761 33 HOH HOH . 
E 3 HOH A 62 762 92 HOH HOH . 
E 3 HOH A 63 763 24 HOH HOH . 
E 3 HOH A 64 764 14 HOH HOH . 
E 3 HOH A 65 765 109 HOH HOH . 
E 3 HOH A 66 766 36 HOH HOH . 
E 3 HOH A 67 767 63 HOH HOH . 
E 3 HOH A 68 768 59 HOH HOH . 
E 3 HOH A 69 769 22 HOH HOH . 
E 3 HOH A 70 770 124 HOH HOH . 
E 3 HOH A 71 771 40 HOH HOH . 
E 3 HOH A 72 772 57 HOH HOH . 
E 3 HOH A 73 773 38 HOH HOH . 
E 3 HOH A 74 774 26 HOH HOH . 
E 3 HOH A 75 775 80 HOH HOH . 
E 3 HOH A 76 776 72 HOH HOH . 
E 3 HOH A 77 777 10 HOH HOH . 
E 3 HOH A 78 778 21 HOH HOH . 
E 3 HOH A 79 779 104 HOH HOH . 
E 3 HOH A 80 780 118 HOH HOH . 
E 3 HOH A 81 781 12 HOH HOH . 
E 3 HOH A 82 782 47 HOH HOH . 
E 3 HOH A 83 783 51 HOH HOH . 
E 3 HOH A 84 784 29 HOH HOH . 
E 3 HOH A 85 785 60 HOH HOH . 
E 3 HOH A 86 786 93 HOH HOH . 
E 3 HOH A 87 787 11 HOH HOH . 
E 3 HOH A 88 788 112 HOH HOH . 
E 3 HOH A 89 789 102 HOH HOH . 
E 3 HOH A 90 790 71 HOH HOH . 
E 3 HOH A 91 791 23 HOH HOH . 
E 3 HOH A 92 792 53 HOH HOH . 
E 3 HOH A 93 793 76 HOH HOH . 
E 3 HOH A 94 794 56 HOH HOH . 
E 3 HOH A 95 795 89 HOH HOH . 
E 3 HOH A 96 796 8 HOH HOH . 
E 3 HOH A 97 797 119 HOH HOH . 
E 3 HOH A 98 798 54 HOH HOH . 
E 3 HOH A 99 799 64 HOH HOH . 
E 3 HOH A 100 800 82 HOH HOH . 
E 3 HOH A 101 801 43 HOH HOH . 
E 3 HOH A 102 802 41 HOH HOH . 
E 3 HOH A 103 803 108 HOH HOH . 
E 3 HOH A 104 804 67 HOH HOH . 
E 3 HOH A 105 805 103 HOH HOH . 
E 3 HOH A 106 806 37 HOH HOH . 
E 3 HOH A 107 807 121 HOH HOH . 
E 3 HOH A 108 808 78 HOH HOH . 
E 3 HOH A 109 809 13 HOH HOH . 
E 3 HOH A 110 810 117 HOH HOH . 
E 3 HOH A 111 811 62 HOH HOH . 
E 3 HOH A 112 812 90 HOH HOH . 
E 3 HOH A 113 813 110 HOH HOH . 
E 3 HOH A 114 814 61 HOH HOH . 
E 3 HOH A 115 815 81 HOH HOH . 
E 3 HOH A 116 816 113 HOH HOH . 
E 3 HOH A 117 817 69 HOH HOH . 
E 3 HOH A 118 818 106 HOH HOH . 
E 3 HOH A 119 819 114 HOH HOH . 
E 3 HOH A 120 820 107 HOH HOH . 
E 3 HOH A 121 821 98 HOH HOH . 
E 3 HOH A 122 822 74 HOH HOH . 
E 3 HOH A 123 823 91 HOH HOH . 
E 3 HOH A 124 824 77 HOH HOH . 
E 3 HOH A 125 825 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 6.986 36.174 2.948 1 57.27 ? C1 GOL 601 A 1 
HETATM 2 O O1 GOL . . . B 2 8.035 35.403 3.524 1 58.43 ? O1 GOL 601 A 1 
HETATM 3 C C2 GOL . . . B 2 5.677 35.895 3.651 1 55.91 ? C2 GOL 601 A 1 
HETATM 4 O O2 GOL . . . B 2 5.498 34.482 3.786 1 54.39 ? O2 GOL 601 A 1 
HETATM 5 C C3 GOL . . . B 2 5.616 36.554 5.012 1 55.77 ? C3 GOL 601 A 1 
HETATM 6 O O3 GOL . . . B 2 4.283 36.562 5.514 1 54.68 ? O3 GOL 601 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#