data_5E8U # _model_server_result.job_id YSfDu60JBoTGeO7uRTt1GQ _model_server_result.datetime_utc '2024-11-26 08:57:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5E8U # _exptl.entry_id 5E8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E8U _cell.length_a 41.6 _cell.length_b 77.1 _cell.length_c 89.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5E8U _atom_sites.fract_transf_matrix[1][1] 0.024038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 601 1 GOL GOL . C 2 GOL A 1 602 2 GOL GOL . D 2 GOL A 1 603 3 GOL GOL . E 3 HOH A 1 701 94 HOH HOH . E 3 HOH A 2 702 66 HOH HOH . E 3 HOH A 3 703 19 HOH HOH . E 3 HOH A 4 704 52 HOH HOH . E 3 HOH A 5 705 9 HOH HOH . E 3 HOH A 6 706 17 HOH HOH . E 3 HOH A 7 707 30 HOH HOH . E 3 HOH A 8 708 73 HOH HOH . E 3 HOH A 9 709 27 HOH HOH . E 3 HOH A 10 710 68 HOH HOH . E 3 HOH A 11 711 46 HOH HOH . E 3 HOH A 12 712 116 HOH HOH . E 3 HOH A 13 713 7 HOH HOH . E 3 HOH A 14 714 2 HOH HOH . E 3 HOH A 15 715 1 HOH HOH . E 3 HOH A 16 716 95 HOH HOH . E 3 HOH A 17 717 3 HOH HOH . E 3 HOH A 18 718 50 HOH HOH . E 3 HOH A 19 719 48 HOH HOH . E 3 HOH A 20 720 70 HOH HOH . E 3 HOH A 21 721 111 HOH HOH . E 3 HOH A 22 722 31 HOH HOH . E 3 HOH A 23 723 79 HOH HOH . E 3 HOH A 24 724 32 HOH HOH . E 3 HOH A 25 725 42 HOH HOH . E 3 HOH A 26 726 83 HOH HOH . E 3 HOH A 27 727 96 HOH HOH . E 3 HOH A 28 728 87 HOH HOH . E 3 HOH A 29 729 49 HOH HOH . E 3 HOH A 30 730 65 HOH HOH . E 3 HOH A 31 731 35 HOH HOH . E 3 HOH A 32 732 97 HOH HOH . E 3 HOH A 33 733 58 HOH HOH . E 3 HOH A 34 734 5 HOH HOH . E 3 HOH A 35 735 44 HOH HOH . E 3 HOH A 36 736 84 HOH HOH . E 3 HOH A 37 737 15 HOH HOH . E 3 HOH A 38 738 55 HOH HOH . E 3 HOH A 39 739 120 HOH HOH . E 3 HOH A 40 740 39 HOH HOH . E 3 HOH A 41 741 45 HOH HOH . E 3 HOH A 42 742 100 HOH HOH . E 3 HOH A 43 743 4 HOH HOH . E 3 HOH A 44 744 122 HOH HOH . E 3 HOH A 45 745 105 HOH HOH . E 3 HOH A 46 746 123 HOH HOH . E 3 HOH A 47 747 16 HOH HOH . E 3 HOH A 48 748 28 HOH HOH . E 3 HOH A 49 749 6 HOH HOH . E 3 HOH A 50 750 18 HOH HOH . E 3 HOH A 51 751 85 HOH HOH . E 3 HOH A 52 752 25 HOH HOH . E 3 HOH A 53 753 115 HOH HOH . E 3 HOH A 54 754 88 HOH HOH . E 3 HOH A 55 755 99 HOH HOH . E 3 HOH A 56 756 34 HOH HOH . E 3 HOH A 57 757 20 HOH HOH . E 3 HOH A 58 758 75 HOH HOH . E 3 HOH A 59 759 101 HOH HOH . E 3 HOH A 60 760 86 HOH HOH . E 3 HOH A 61 761 33 HOH HOH . E 3 HOH A 62 762 92 HOH HOH . E 3 HOH A 63 763 24 HOH HOH . E 3 HOH A 64 764 14 HOH HOH . E 3 HOH A 65 765 109 HOH HOH . E 3 HOH A 66 766 36 HOH HOH . E 3 HOH A 67 767 63 HOH HOH . E 3 HOH A 68 768 59 HOH HOH . E 3 HOH A 69 769 22 HOH HOH . E 3 HOH A 70 770 124 HOH HOH . E 3 HOH A 71 771 40 HOH HOH . E 3 HOH A 72 772 57 HOH HOH . E 3 HOH A 73 773 38 HOH HOH . E 3 HOH A 74 774 26 HOH HOH . E 3 HOH A 75 775 80 HOH HOH . E 3 HOH A 76 776 72 HOH HOH . E 3 HOH A 77 777 10 HOH HOH . E 3 HOH A 78 778 21 HOH HOH . E 3 HOH A 79 779 104 HOH HOH . E 3 HOH A 80 780 118 HOH HOH . E 3 HOH A 81 781 12 HOH HOH . E 3 HOH A 82 782 47 HOH HOH . E 3 HOH A 83 783 51 HOH HOH . E 3 HOH A 84 784 29 HOH HOH . E 3 HOH A 85 785 60 HOH HOH . E 3 HOH A 86 786 93 HOH HOH . E 3 HOH A 87 787 11 HOH HOH . E 3 HOH A 88 788 112 HOH HOH . E 3 HOH A 89 789 102 HOH HOH . E 3 HOH A 90 790 71 HOH HOH . E 3 HOH A 91 791 23 HOH HOH . E 3 HOH A 92 792 53 HOH HOH . E 3 HOH A 93 793 76 HOH HOH . E 3 HOH A 94 794 56 HOH HOH . E 3 HOH A 95 795 89 HOH HOH . E 3 HOH A 96 796 8 HOH HOH . E 3 HOH A 97 797 119 HOH HOH . E 3 HOH A 98 798 54 HOH HOH . E 3 HOH A 99 799 64 HOH HOH . E 3 HOH A 100 800 82 HOH HOH . E 3 HOH A 101 801 43 HOH HOH . E 3 HOH A 102 802 41 HOH HOH . E 3 HOH A 103 803 108 HOH HOH . E 3 HOH A 104 804 67 HOH HOH . E 3 HOH A 105 805 103 HOH HOH . E 3 HOH A 106 806 37 HOH HOH . E 3 HOH A 107 807 121 HOH HOH . E 3 HOH A 108 808 78 HOH HOH . E 3 HOH A 109 809 13 HOH HOH . E 3 HOH A 110 810 117 HOH HOH . E 3 HOH A 111 811 62 HOH HOH . E 3 HOH A 112 812 90 HOH HOH . E 3 HOH A 113 813 110 HOH HOH . E 3 HOH A 114 814 61 HOH HOH . E 3 HOH A 115 815 81 HOH HOH . E 3 HOH A 116 816 113 HOH HOH . E 3 HOH A 117 817 69 HOH HOH . E 3 HOH A 118 818 106 HOH HOH . E 3 HOH A 119 819 114 HOH HOH . E 3 HOH A 120 820 107 HOH HOH . E 3 HOH A 121 821 98 HOH HOH . E 3 HOH A 122 822 74 HOH HOH . E 3 HOH A 123 823 91 HOH HOH . E 3 HOH A 124 824 77 HOH HOH . E 3 HOH A 125 825 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 8.282 -12.464 30.463 1 50.92 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . C 2 7.58 -13.696 30.485 1 55.43 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . C 2 9.764 -12.719 30.327 1 46.43 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . C 2 10.039 -13.258 29.029 1 44 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . C 2 10.511 -11.419 30.519 1 45.03 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . C 2 11.85 -11.625 30.955 1 40.85 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #