data_5E8Y # _model_server_result.job_id QcJB_NzfZF_US0NfCRtJEQ _model_server_result.datetime_utc '2024-12-12 17:11:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5E8Y # _exptl.entry_id 5E8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E8Y _cell.length_a 64.9 _cell.length_b 75.97 _cell.length_c 74.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 290 n n O4 C21 STU sing 291 n n C25 C24 STU sing 292 n n C25 N3 STU sing 293 n n C25 H25 STU sing 294 n n C24 C23 STU sing 295 n n C24 H241 STU sing 296 n n C24 H242 STU sing 297 n n C23 C22 STU sing 298 n n C23 N4 STU sing 299 n n C23 H23 STU sing 300 n n C22 C21 STU sing 301 n n C22 O6 STU sing 302 n n C22 H22 STU sing 303 n n C21 C26 STU sing 304 n n C21 N2 STU sing 305 n n C26 H261 STU sing 306 n n C26 H262 STU sing 307 n n C26 H263 STU sing 308 n n N2 C18 STU sing 309 n y N2 C17 STU sing 310 n y C18 C19 STU doub 311 n y C18 C11 STU sing 312 n y C19 C6 STU sing 313 n y C19 N3 STU sing 314 n y C6 C7 STU doub 315 n y C6 C5 STU sing 316 n y C7 C10 STU sing 317 n y C7 C8 STU sing 318 n n C10 C11 STU doub 319 n y C10 C9 STU sing 320 n n C11 C12 STU sing 321 n y C12 C17 STU doub 322 n y C12 C13 STU sing 323 n y C17 C16 STU sing 324 n y C16 C15 STU doub 325 n y C16 H16 STU sing 326 n n C15 C14 STU sing 327 n y C15 H15 STU sing 328 n n C14 C13 STU doub 329 n y C14 H14 STU sing 330 n n C13 H13 STU sing 331 n n C9 N1 STU sing 332 n n C9 H91 STU sing 333 n n C9 H92 STU sing 334 n n N1 C8 STU sing 335 n n N1 HN1 STU sing 336 n n C8 O5 STU doub 337 n n C5 C20 STU doub 338 n y C5 C4 STU sing 339 n y C20 C1 STU sing 340 n y C20 N3 STU sing 341 n y C1 C2 STU doub 342 n y C1 H1 STU sing 343 n n C2 C3 STU sing 344 n y C2 H2 STU sing 345 n n C3 C4 STU doub 346 n y C3 H3 STU sing 347 n n C4 H4 STU sing 348 n n O6 C27 STU sing 349 n n C27 H271 STU sing 350 n n C27 H272 STU sing 351 n n C27 H273 STU sing 352 n n N4 C28 STU sing 353 n n N4 HN4 STU sing 354 n n C28 H281 STU sing 355 n n C28 H282 STU sing 356 n n C28 H283 STU sing 357 n n # _atom_sites.entry_id 5E8Y _atom_sites.fract_transf_matrix[1][1] 0.015408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STU A 1 601 1 STU STU . C 3 HOH A 1 701 88 HOH HOH . C 3 HOH A 2 702 28 HOH HOH . C 3 HOH A 3 703 6 HOH HOH . C 3 HOH A 4 704 79 HOH HOH . C 3 HOH A 5 705 60 HOH HOH . C 3 HOH A 6 706 29 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 20 HOH HOH . C 3 HOH A 9 709 10 HOH HOH . C 3 HOH A 10 710 57 HOH HOH . C 3 HOH A 11 711 24 HOH HOH . C 3 HOH A 12 712 1 HOH HOH . C 3 HOH A 13 713 75 HOH HOH . C 3 HOH A 14 714 41 HOH HOH . C 3 HOH A 15 715 26 HOH HOH . C 3 HOH A 16 716 5 HOH HOH . C 3 HOH A 17 717 31 HOH HOH . C 3 HOH A 18 718 12 HOH HOH . C 3 HOH A 19 719 77 HOH HOH . C 3 HOH A 20 720 36 HOH HOH . C 3 HOH A 21 721 19 HOH HOH . C 3 HOH A 22 722 54 HOH HOH . C 3 HOH A 23 723 3 HOH HOH . C 3 HOH A 24 724 4 HOH HOH . C 3 HOH A 25 725 40 HOH HOH . C 3 HOH A 26 726 39 HOH HOH . C 3 HOH A 27 727 42 HOH HOH . C 3 HOH A 28 728 21 HOH HOH . C 3 HOH A 29 729 46 HOH HOH . C 3 HOH A 30 730 56 HOH HOH . C 3 HOH A 31 731 78 HOH HOH . C 3 HOH A 32 732 62 HOH HOH . C 3 HOH A 33 733 68 HOH HOH . C 3 HOH A 34 734 74 HOH HOH . C 3 HOH A 35 735 58 HOH HOH . C 3 HOH A 36 736 18 HOH HOH . C 3 HOH A 37 737 15 HOH HOH . C 3 HOH A 38 738 14 HOH HOH . C 3 HOH A 39 739 11 HOH HOH . C 3 HOH A 40 740 44 HOH HOH . C 3 HOH A 41 741 71 HOH HOH . C 3 HOH A 42 742 53 HOH HOH . C 3 HOH A 43 743 55 HOH HOH . C 3 HOH A 44 744 87 HOH HOH . C 3 HOH A 45 745 64 HOH HOH . C 3 HOH A 46 746 69 HOH HOH . C 3 HOH A 47 747 2 HOH HOH . C 3 HOH A 48 748 17 HOH HOH . C 3 HOH A 49 749 16 HOH HOH . C 3 HOH A 50 750 8 HOH HOH . C 3 HOH A 51 751 73 HOH HOH . C 3 HOH A 52 752 85 HOH HOH . C 3 HOH A 53 753 37 HOH HOH . C 3 HOH A 54 754 66 HOH HOH . C 3 HOH A 55 755 30 HOH HOH . C 3 HOH A 56 756 13 HOH HOH . C 3 HOH A 57 757 70 HOH HOH . C 3 HOH A 58 758 51 HOH HOH . C 3 HOH A 59 759 45 HOH HOH . C 3 HOH A 60 760 67 HOH HOH . C 3 HOH A 61 761 32 HOH HOH . C 3 HOH A 62 762 84 HOH HOH . C 3 HOH A 63 763 72 HOH HOH . C 3 HOH A 64 764 35 HOH HOH . C 3 HOH A 65 765 9 HOH HOH . C 3 HOH A 66 766 22 HOH HOH . C 3 HOH A 67 767 43 HOH HOH . C 3 HOH A 68 768 49 HOH HOH . C 3 HOH A 69 769 27 HOH HOH . C 3 HOH A 70 770 34 HOH HOH . C 3 HOH A 71 771 80 HOH HOH . C 3 HOH A 72 772 50 HOH HOH . C 3 HOH A 73 773 23 HOH HOH . C 3 HOH A 74 774 48 HOH HOH . C 3 HOH A 75 775 47 HOH HOH . C 3 HOH A 76 776 52 HOH HOH . C 3 HOH A 77 777 76 HOH HOH . C 3 HOH A 78 778 61 HOH HOH . C 3 HOH A 79 779 89 HOH HOH . C 3 HOH A 80 780 25 HOH HOH . C 3 HOH A 81 781 82 HOH HOH . C 3 HOH A 82 782 38 HOH HOH . C 3 HOH A 83 783 33 HOH HOH . C 3 HOH A 84 784 65 HOH HOH . C 3 HOH A 85 785 81 HOH HOH . C 3 HOH A 86 786 83 HOH HOH . C 3 HOH A 87 787 59 HOH HOH . C 3 HOH A 88 788 86 HOH HOH . C 3 HOH A 89 789 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . B 2 17.674 -2.151 5.211 1 42.16 ? O4 STU 601 A 1 HETATM 2 C C25 STU . . . B 2 16.787 -1.443 4.308 1 46.45 ? C25 STU 601 A 1 HETATM 3 C C24 STU . . . B 2 17.276 -0.061 3.891 1 46.5 ? C24 STU 601 A 1 HETATM 4 C C23 STU . . . B 2 18.588 0.24 4.639 1 48.24 ? C23 STU 601 A 1 HETATM 5 C C22 STU . . . B 2 18.36 0.008 6.131 1 43.71 ? C22 STU 601 A 1 HETATM 6 C C21 STU . . . B 2 18.22 -1.534 6.375 1 41.35 ? C21 STU 601 A 1 HETATM 7 C C26 STU . . . B 2 19.557 -2.229 6.554 1 39.79 ? C26 STU 601 A 1 HETATM 8 N N2 STU . . . B 2 17.288 -1.853 7.481 1 40.96 ? N2 STU 601 A 1 HETATM 9 C C18 STU . . . B 2 15.923 -2.062 7.29 1 37.75 ? C18 STU 601 A 1 HETATM 10 C C19 STU . . . B 2 15.092 -1.903 6.136 1 39.39 ? C19 STU 601 A 1 HETATM 11 C C6 STU . . . B 2 13.685 -2.046 6.236 1 38.04 ? C6 STU 601 A 1 HETATM 12 C C7 STU . . . B 2 13.151 -2.391 7.491 1 35.74 ? C7 STU 601 A 1 HETATM 13 C C10 STU . . . B 2 13.973 -2.587 8.599 1 35 ? C10 STU 601 A 1 HETATM 14 C C11 STU . . . B 2 15.336 -2.406 8.522 1 36.41 ? C11 STU 601 A 1 HETATM 15 C C12 STU . . . B 2 16.376 -2.408 9.511 1 38.84 ? C12 STU 601 A 1 HETATM 16 C C17 STU . . . B 2 17.568 -2.032 8.855 1 42.11 ? C17 STU 601 A 1 HETATM 17 C C16 STU . . . B 2 18.744 -1.827 9.57 1 42.89 ? C16 STU 601 A 1 HETATM 18 C C15 STU . . . B 2 18.709 -1.987 10.945 1 40.7 ? C15 STU 601 A 1 HETATM 19 C C14 STU . . . B 2 17.556 -2.409 11.593 1 38.23 ? C14 STU 601 A 1 HETATM 20 C C13 STU . . . B 2 16.394 -2.635 10.885 1 37.01 ? C13 STU 601 A 1 HETATM 21 C C9 STU . . . B 2 13.151 -3.004 9.779 1 32.59 ? C9 STU 601 A 1 HETATM 22 N N1 STU . . . B 2 11.807 -2.899 9.242 1 35.12 ? N1 STU 601 A 1 HETATM 23 C C8 STU . . . B 2 11.762 -2.557 7.935 1 35.65 ? C8 STU 601 A 1 HETATM 24 O O5 STU . . . B 2 10.753 -2.45 7.271 1 37.29 ? O5 STU 601 A 1 HETATM 25 C C5 STU . . . B 2 13.153 -1.732 4.91 1 40.92 ? C5 STU 601 A 1 HETATM 26 C C20 STU . . . B 2 14.262 -1.424 4.092 1 42.53 ? C20 STU 601 A 1 HETATM 27 C C1 STU . . . B 2 14.105 -1.083 2.751 1 42.7 ? C1 STU 601 A 1 HETATM 28 C C2 STU . . . B 2 12.819 -1.069 2.212 1 42.33 ? C2 STU 601 A 1 HETATM 29 C C3 STU . . . B 2 11.715 -1.384 2.996 1 41.9 ? C3 STU 601 A 1 HETATM 30 C C4 STU . . . B 2 11.872 -1.707 4.346 1 41.29 ? C4 STU 601 A 1 HETATM 31 N N3 STU . . . B 2 15.439 -1.552 4.835 1 42.47 ? N3 STU 601 A 1 HETATM 32 O O6 STU . . . B 2 17.164 0.725 6.486 1 40.88 ? O6 STU 601 A 1 HETATM 33 C C27 STU . . . B 2 17.112 1.214 7.838 1 42.57 ? C27 STU 601 A 1 HETATM 34 N N4 STU . . . B 2 19.169 1.558 4.386 1 51.13 ? N4 STU 601 A 1 HETATM 35 C C28 STU . . . B 2 20.622 1.634 4.603 1 50.07 ? C28 STU 601 A 1 HETATM 36 H H25 STU . . . B 2 16.816 -2.114 3.456 1 46.9 ? H25 STU 601 A 1 HETATM 37 H H241 STU . . . B 2 16.499 0.683 4.053 1 45.89 ? H241 STU 601 A 1 HETATM 38 H H242 STU . . . B 2 17.456 -0.039 2.818 1 45.83 ? H242 STU 601 A 1 HETATM 39 H H23 STU . . . B 2 19.294 -0.509 4.283 1 48.24 ? H23 STU 601 A 1 HETATM 40 H H22 STU . . . B 2 19.225 0.347 6.698 1 43.6 ? H22 STU 601 A 1 HETATM 41 H H261 STU . . . B 2 19.491 -3.189 7.062 1 39.15 ? H261 STU 601 A 1 HETATM 42 H H262 STU . . . B 2 20.023 -2.448 5.595 1 40.48 ? H262 STU 601 A 1 HETATM 43 H H263 STU . . . B 2 20.288 -1.63 7.093 1 39.44 ? H263 STU 601 A 1 HETATM 44 H H16 STU . . . B 2 19.686 -1.543 9.108 1 43.26 ? H16 STU 601 A 1 HETATM 45 H H15 STU . . . B 2 19.606 -1.751 11.513 1 41.16 ? H15 STU 601 A 1 HETATM 46 H H14 STU . . . B 2 17.561 -2.56 12.672 1 38.79 ? H14 STU 601 A 1 HETATM 47 H H13 STU . . . B 2 15.501 -3.003 11.389 1 36.46 ? H13 STU 601 A 1 HETATM 48 H H91 STU . . . B 2 13.402 -4.009 10.115 1 32.73 ? H91 STU 601 A 1 HETATM 49 H H92 STU . . . B 2 13.322 -2.34 10.624 1 32.33 ? H92 STU 601 A 1 HETATM 50 H HN1 STU . . . B 2 10.989 -3.072 9.817 1 35.9 ? HN1 STU 601 A 1 HETATM 51 H H1 STU . . . B 2 14.963 -0.842 2.125 1 42.91 ? H1 STU 601 A 1 HETATM 52 H H2 STU . . . B 2 12.685 -0.8 1.166 1 43.33 ? H2 STU 601 A 1 HETATM 53 H H3 STU . . . B 2 10.72 -1.383 2.552 1 41.63 ? H3 STU 601 A 1 HETATM 54 H H4 STU . . . B 2 10.993 -1.95 4.939 1 41.16 ? H4 STU 601 A 1 HETATM 55 H H271 STU . . . B 2 17.284 2.283 7.742 1 42.64 ? H271 STU 601 A 1 HETATM 56 H H272 STU . . . B 2 17.875 0.793 8.492 1 42.26 ? H272 STU 601 A 1 HETATM 57 H H273 STU . . . B 2 16.141 1.071 8.309 1 42.6 ? H273 STU 601 A 1 HETATM 58 H HN4 STU . . . B 2 18.959 1.907 3.456 1 51.39 ? HN4 STU 601 A 1 HETATM 59 H H281 STU . . . B 2 21.124 1.25 3.716 1 50.24 ? H281 STU 601 A 1 HETATM 60 H H282 STU . . . B 2 21.018 2.63 4.788 1 50.42 ? H282 STU 601 A 1 HETATM 61 H H283 STU . . . B 2 20.953 1.012 5.433 1 49.59 ? H283 STU 601 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 61 #