data_5E92 # _model_server_result.job_id hEIJNNc0YZJoM4JTDThAkg _model_server_result.datetime_utc '2024-11-06 01:46:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5E92 # _exptl.entry_id 5E92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E92 _cell.length_a 62.76 _cell.length_b 75.48 _cell.length_c 77.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 151 A ASN 384 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc2 A OD2 ASP 164 A ASP 397 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 A OD1 ASP 164 A ASP 397 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 A OD2 ASP 164 A ASP 397 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 B O2G ANP . A ANP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc6 B O2A ANP . A ANP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 B O1G ANP . A ANP 601 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc8 B O2B ANP . A ANP 601 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc9 C MG MG . A MG 602 1_555 E O HOH . A HOH 739 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc10 D MG MG . A MG 603 1_555 E O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc11 D MG MG . A MG 603 1_555 E O HOH . A HOH 740 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5E92 _atom_sites.fract_transf_matrix[1][1] 0.015934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 601 1 ANP ANP . C 3 MG A 1 602 1 MG MG . D 3 MG A 1 603 2 MG MG . E 4 HOH A 1 701 5 HOH HOH . E 4 HOH A 2 702 32 HOH HOH . E 4 HOH A 3 703 15 HOH HOH . E 4 HOH A 4 704 67 HOH HOH . E 4 HOH A 5 705 52 HOH HOH . E 4 HOH A 6 706 72 HOH HOH . E 4 HOH A 7 707 66 HOH HOH . E 4 HOH A 8 708 10 HOH HOH . E 4 HOH A 9 709 33 HOH HOH . E 4 HOH A 10 710 17 HOH HOH . E 4 HOH A 11 711 27 HOH HOH . E 4 HOH A 12 712 12 HOH HOH . E 4 HOH A 13 713 84 HOH HOH . E 4 HOH A 14 714 36 HOH HOH . E 4 HOH A 15 715 6 HOH HOH . E 4 HOH A 16 716 80 HOH HOH . E 4 HOH A 17 717 61 HOH HOH . E 4 HOH A 18 718 19 HOH HOH . E 4 HOH A 19 719 42 HOH HOH . E 4 HOH A 20 720 23 HOH HOH . E 4 HOH A 21 721 3 HOH HOH . E 4 HOH A 22 722 44 HOH HOH . E 4 HOH A 23 723 4 HOH HOH . E 4 HOH A 24 724 18 HOH HOH . E 4 HOH A 25 725 37 HOH HOH . E 4 HOH A 26 726 8 HOH HOH . E 4 HOH A 27 727 26 HOH HOH . E 4 HOH A 28 728 29 HOH HOH . E 4 HOH A 29 729 63 HOH HOH . E 4 HOH A 30 730 25 HOH HOH . E 4 HOH A 31 731 30 HOH HOH . E 4 HOH A 32 732 82 HOH HOH . E 4 HOH A 33 733 40 HOH HOH . E 4 HOH A 34 734 13 HOH HOH . E 4 HOH A 35 735 60 HOH HOH . E 4 HOH A 36 736 50 HOH HOH . E 4 HOH A 37 737 74 HOH HOH . E 4 HOH A 38 738 31 HOH HOH . E 4 HOH A 39 739 1 HOH HOH . E 4 HOH A 40 740 2 HOH HOH . E 4 HOH A 41 741 51 HOH HOH . E 4 HOH A 42 742 49 HOH HOH . E 4 HOH A 43 743 9 HOH HOH . E 4 HOH A 44 744 47 HOH HOH . E 4 HOH A 45 745 55 HOH HOH . E 4 HOH A 46 746 34 HOH HOH . E 4 HOH A 47 747 70 HOH HOH . E 4 HOH A 48 748 35 HOH HOH . E 4 HOH A 49 749 21 HOH HOH . E 4 HOH A 50 750 7 HOH HOH . E 4 HOH A 51 751 69 HOH HOH . E 4 HOH A 52 752 11 HOH HOH . E 4 HOH A 53 753 14 HOH HOH . E 4 HOH A 54 754 43 HOH HOH . E 4 HOH A 55 755 45 HOH HOH . E 4 HOH A 56 756 73 HOH HOH . E 4 HOH A 57 757 28 HOH HOH . E 4 HOH A 58 758 39 HOH HOH . E 4 HOH A 59 759 16 HOH HOH . E 4 HOH A 60 760 24 HOH HOH . E 4 HOH A 61 761 20 HOH HOH . E 4 HOH A 62 762 48 HOH HOH . E 4 HOH A 63 763 68 HOH HOH . E 4 HOH A 64 764 83 HOH HOH . E 4 HOH A 65 765 58 HOH HOH . E 4 HOH A 66 766 46 HOH HOH . E 4 HOH A 67 767 64 HOH HOH . E 4 HOH A 68 768 77 HOH HOH . E 4 HOH A 69 769 38 HOH HOH . E 4 HOH A 70 770 22 HOH HOH . E 4 HOH A 71 771 81 HOH HOH . E 4 HOH A 72 772 79 HOH HOH . E 4 HOH A 73 773 41 HOH HOH . E 4 HOH A 74 774 65 HOH HOH . E 4 HOH A 75 775 78 HOH HOH . E 4 HOH A 76 776 76 HOH HOH . E 4 HOH A 77 777 56 HOH HOH . E 4 HOH A 78 778 75 HOH HOH . E 4 HOH A 79 779 57 HOH HOH . E 4 HOH A 80 780 71 HOH HOH . E 4 HOH A 81 781 54 HOH HOH . E 4 HOH A 82 782 62 HOH HOH . E 4 HOH A 83 783 59 HOH HOH . E 4 HOH A 84 784 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 23.872 0.538 10.027 1 44.43 ? PG ANP 601 A 1 HETATM 2 O O1G ANP . . . B 2 24.332 0.231 11.375 1 42.34 ? O1G ANP 601 A 1 HETATM 3 O O2G ANP . . . B 2 23.226 1.889 10.055 1 37.8 ? O2G ANP 601 A 1 HETATM 4 O O3G ANP . . . B 2 25.108 0.562 9.088 1 48.06 ? O3G ANP 601 A 1 HETATM 5 P PB ANP . . . B 2 22.302 -2.095 9.827 1 44.96 ? PB ANP 601 A 1 HETATM 6 O O1B ANP . . . B 2 23.218 -3.088 9.29 1 48.69 ? O1B ANP 601 A 1 HETATM 7 O O2B ANP . . . B 2 22.487 -2.2 11.317 1 44.38 ? O2B ANP 601 A 1 HETATM 8 N N3B ANP . . . B 2 22.714 -0.538 9.396 1 46.43 ? N3B ANP 601 A 1 HETATM 9 P PA ANP . . . B 2 19.388 -1.533 9.617 1 36.74 ? PA ANP 601 A 1 HETATM 10 O O1A ANP . . . B 2 18.414 -1.957 10.658 1 32.88 ? O1A ANP 601 A 1 HETATM 11 O O2A ANP . . . B 2 19.752 -0.072 9.593 1 32.32 ? O2A ANP 601 A 1 HETATM 12 O O3A ANP . . . B 2 20.754 -2.378 9.479 1 39.35 ? O3A ANP 601 A 1 HETATM 13 O O5' ANP . . . B 2 18.728 -1.795 8.197 1 36.49 ? O5' ANP 601 A 1 HETATM 14 C C5' ANP . . . B 2 19.335 -1.483 6.897 1 36.95 ? C5' ANP 601 A 1 HETATM 15 C C4' ANP . . . B 2 18.29 -0.844 6.013 1 36.71 ? C4' ANP 601 A 1 HETATM 16 O O4' ANP . . . B 2 17.201 -1.762 5.792 1 36.24 ? O4' ANP 601 A 1 HETATM 17 C C3' ANP . . . B 2 17.613 0.412 6.55 1 38.09 ? C3' ANP 601 A 1 HETATM 18 O O3' ANP . . . B 2 18.452 1.533 6.347 1 38.08 ? O3' ANP 601 A 1 HETATM 19 C C2' ANP . . . B 2 16.346 0.463 5.705 1 40.89 ? C2' ANP 601 A 1 HETATM 20 O O2' ANP . . . B 2 16.609 0.969 4.396 1 43.22 ? O2' ANP 601 A 1 HETATM 21 C C1' ANP . . . B 2 15.989 -1.036 5.643 1 37.73 ? C1' ANP 601 A 1 HETATM 22 N N9 ANP . . . B 2 15.039 -1.469 6.678 1 35.87 ? N9 ANP 601 A 1 HETATM 23 C C8 ANP . . . B 2 15.297 -1.845 7.976 1 36.7 ? C8 ANP 601 A 1 HETATM 24 N N7 ANP . . . B 2 14.232 -2.224 8.642 1 36.05 ? N7 ANP 601 A 1 HETATM 25 C C5 ANP . . . B 2 13.205 -2.081 7.721 1 36.4 ? C5 ANP 601 A 1 HETATM 26 C C6 ANP . . . B 2 11.816 -2.287 7.816 1 36.65 ? C6 ANP 601 A 1 HETATM 27 N N6 ANP . . . B 2 11.212 -2.712 8.917 1 34.6 ? N6 ANP 601 A 1 HETATM 28 N N1 ANP . . . B 2 11.056 -1.994 6.73 1 38.02 ? N1 ANP 601 A 1 HETATM 29 C C2 ANP . . . B 2 11.659 -1.526 5.628 1 39.65 ? C2 ANP 601 A 1 HETATM 30 N N3 ANP . . . B 2 12.965 -1.291 5.428 1 41.11 ? N3 ANP 601 A 1 HETATM 31 C C4 ANP . . . B 2 13.688 -1.605 6.516 1 37.33 ? C4 ANP 601 A 1 HETATM 32 H HOG2 ANP . . . B 2 22.673 2.163 9.276 1 37.99 ? HOG2 ANP 601 A 1 HETATM 33 H HOG3 ANP . . . B 2 26.014 0.902 9.315 1 47.95 ? HOG3 ANP 601 A 1 HETATM 34 H HOB2 ANP . . . B 2 22.74 -3.009 11.835 1 45.37 ? HOB2 ANP 601 A 1 HETATM 35 H HNB1 ANP . . . B 2 22.166 -0.172 8.624 1 46.25 ? HNB1 ANP 601 A 1 HETATM 36 H HOA2 ANP . . . B 2 19.465 0.684 9.017 1 31.85 ? HOA2 ANP 601 A 1 HETATM 37 H "H5'1" ANP . . . B 2 20.173 -0.817 7.097 1 36.82 ? "H5'1" ANP 601 A 1 HETATM 38 H "H5'2" ANP . . . B 2 19.765 -2.377 6.449 1 37.43 ? "H5'2" ANP 601 A 1 HETATM 39 H H4' ANP . . . B 2 18.684 -0.669 5.013 1 36.39 ? H4' ANP 601 A 1 HETATM 40 H H3' ANP . . . B 2 17.409 0.36 7.619 1 37.67 ? H3' ANP 601 A 1 HETATM 41 H HO3' ANP . . . B 2 18.328 2.182 7.087 1 38.69 ? HO3' ANP 601 A 1 HETATM 42 H H2' ANP . . . B 2 15.596 1.064 6.216 1 40.83 ? H2' ANP 601 A 1 HETATM 43 H HO2' ANP . . . B 2 15.751 0.932 3.896 1 43.42 ? HO2' ANP 601 A 1 HETATM 44 H H1' ANP . . . B 2 15.571 -1.31 4.675 1 37.41 ? H1' ANP 601 A 1 HETATM 45 H H8 ANP . . . B 2 16.292 -1.828 8.416 1 36.61 ? H8 ANP 601 A 1 HETATM 46 H HN61 ANP . . . B 2 11.751 -2.905 9.754 1 34.8 ? HN61 ANP 601 A 1 HETATM 47 H HN62 ANP . . . B 2 10.207 -2.853 8.948 1 34.69 ? HN62 ANP 601 A 1 HETATM 48 H H2 ANP . . . B 2 11.003 -1.333 4.781 1 39.13 ? H2 ANP 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #