data_5E9F
#
_model_server_result.job_id            zfqFUFX8AmrTQINtVGhMdA 
_model_server_result.datetime_utc      '2024-12-21 16:48:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e9f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    5E9F 
#
_exptl.entry_id    5E9F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5E9F 
_cell.length_a            121.583 
_cell.length_b            135.314 
_cell.length_c            158.88 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E9F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 177 A ASP 177 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc2 A OD1 ASP 179 A ASP 179 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc3 B OD2 ASP 177 B ASP 177 1_555 F MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc4 B OD1 ASP 179 B ASP 179 1_555 F MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc5 C OD2 ASP 177 C ASP 177 1_555 G MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc6 C OD1 ASP 179 C ASP 179 1_555 G MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc7 D OD2 ASP 177 D ASP 177 1_555 H MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc8 D OD1 ASP 179 D ASP 179 1_555 H MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5E9F 
_atom_sites.fract_transf_matrix[1][1]    0.008225 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00739 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006294 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 601 601 MG MG . 
F 2 MG B 1 601 601 MG MG . 
G 2 MG C 1 601 601 MG MG . 
H 2 MG D 1 601 601 MG MG . 
I 3 HOH A 1 701 711 HOH HOH . 
I 3 HOH A 2 702 714 HOH HOH . 
I 3 HOH A 3 703 707 HOH HOH . 
I 3 HOH A 4 704 709 HOH HOH . 
I 3 HOH A 5 705 704 HOH HOH . 
I 3 HOH A 6 706 706 HOH HOH . 
I 3 HOH A 7 707 710 HOH HOH . 
I 3 HOH A 8 708 719 HOH HOH . 
I 3 HOH A 9 709 705 HOH HOH . 
I 3 HOH A 10 710 718 HOH HOH . 
I 3 HOH A 11 711 715 HOH HOH . 
I 3 HOH A 12 712 717 HOH HOH . 
I 3 HOH A 13 713 713 HOH HOH . 
I 3 HOH A 14 714 716 HOH HOH . 
I 3 HOH A 15 715 703 HOH HOH . 
I 3 HOH A 16 716 708 HOH HOH . 
I 3 HOH A 17 717 720 HOH HOH . 
I 3 HOH A 18 718 702 HOH HOH . 
I 3 HOH A 19 719 712 HOH HOH . 
I 3 HOH A 20 720 701 HOH HOH . 
J 3 HOH B 1 701 711 HOH HOH . 
J 3 HOH B 2 702 709 HOH HOH . 
J 3 HOH B 3 703 715 HOH HOH . 
J 3 HOH B 4 704 707 HOH HOH . 
J 3 HOH B 5 705 712 HOH HOH . 
J 3 HOH B 6 706 714 HOH HOH . 
J 3 HOH B 7 707 705 HOH HOH . 
J 3 HOH B 8 708 704 HOH HOH . 
J 3 HOH B 9 709 710 HOH HOH . 
J 3 HOH B 10 710 713 HOH HOH . 
J 3 HOH B 11 711 708 HOH HOH . 
J 3 HOH B 12 712 716 HOH HOH . 
J 3 HOH B 13 713 701 HOH HOH . 
J 3 HOH B 14 714 703 HOH HOH . 
J 3 HOH B 15 715 702 HOH HOH . 
J 3 HOH B 16 716 706 HOH HOH . 
K 3 HOH C 1 701 702 HOH HOH . 
K 3 HOH C 2 702 709 HOH HOH . 
K 3 HOH C 3 703 711 HOH HOH . 
K 3 HOH C 4 704 710 HOH HOH . 
K 3 HOH C 5 705 716 HOH HOH . 
K 3 HOH C 6 706 712 HOH HOH . 
K 3 HOH C 7 707 708 HOH HOH . 
K 3 HOH C 8 708 703 HOH HOH . 
K 3 HOH C 9 709 707 HOH HOH . 
K 3 HOH C 10 710 705 HOH HOH . 
K 3 HOH C 11 711 701 HOH HOH . 
K 3 HOH C 12 712 714 HOH HOH . 
K 3 HOH C 13 713 706 HOH HOH . 
K 3 HOH C 14 714 704 HOH HOH . 
K 3 HOH C 15 715 717 HOH HOH . 
K 3 HOH C 16 716 713 HOH HOH . 
K 3 HOH C 17 717 715 HOH HOH . 
L 3 HOH D 1 701 705 HOH HOH . 
L 3 HOH D 2 702 702 HOH HOH . 
L 3 HOH D 3 703 708 HOH HOH . 
L 3 HOH D 4 704 701 HOH HOH . 
L 3 HOH D 5 705 712 HOH HOH . 
L 3 HOH D 6 706 709 HOH HOH . 
L 3 HOH D 7 707 703 HOH HOH . 
L 3 HOH D 8 708 707 HOH HOH . 
L 3 HOH D 9 709 704 HOH HOH . 
L 3 HOH D 10 710 711 HOH HOH . 
L 3 HOH D 11 711 706 HOH HOH . 
L 3 HOH D 12 712 713 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -41.633 
_atom_site.Cartn_y               58.398 
_atom_site.Cartn_z               -30.393 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        36.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#