data_5E9J # _model_server_result.job_id fZ3o171seEkkVH5o2Vxaug _model_server_result.datetime_utc '2024-11-13 08:59:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5E9J # _exptl.entry_id 5E9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E9J _cell.length_a 70.76 _cell.length_b 114.38 _cell.length_c 134.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 5E9J _atom_sites.fract_transf_matrix[1][1] 0.014132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 501 1 SAH SAH . D 2 SAH B 1 501 2 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 2 65.542 122.398 101.297 1 96.17 ? N SAH 501 B 1 HETATM 2 C CA SAH . . . D 2 64.32 122.803 100.639 1 97.67 ? CA SAH 501 B 1 HETATM 3 C CB SAH . . . D 2 63.428 123.52 101.626 1 97.01 ? CB SAH 501 B 1 HETATM 4 C CG SAH . . . D 2 63.015 122.596 102.829 1 95.88 ? CG SAH 501 B 1 HETATM 5 S SD SAH . . . D 2 63.784 123.205 104.364 1 93.01 ? SD SAH 501 B 1 HETATM 6 C C SAH . . . D 2 64.653 123.763 99.469 1 99.9 ? C SAH 501 B 1 HETATM 7 O O SAH . . . D 2 64.147 123.589 98.379 1 100.86 ? O SAH 501 B 1 HETATM 8 O OXT SAH . . . D 2 65.459 124.733 99.652 1 100.86 -1 OXT SAH 501 B 1 HETATM 9 C C5' SAH . . . D 2 63.452 122.021 105.766 1 91.07 ? C5' SAH 501 B 1 HETATM 10 C C4' SAH . . . D 2 63.913 120.551 105.353 1 90.24 ? C4' SAH 501 B 1 HETATM 11 O O4' SAH . . . D 2 64.851 120.119 106.115 1 88.58 ? O4' SAH 501 B 1 HETATM 12 C C3' SAH . . . D 2 62.753 119.522 105.522 1 89.68 ? C3' SAH 501 B 1 HETATM 13 O O3' SAH . . . D 2 62.446 118.985 104.306 1 90.99 ? O3' SAH 501 B 1 HETATM 14 C C2' SAH . . . D 2 63.34 118.442 106.428 1 87.61 ? C2' SAH 501 B 1 HETATM 15 O O2' SAH . . . D 2 62.786 117.053 106.107 1 87.66 ? O2' SAH 501 B 1 HETATM 16 C C1' SAH . . . D 2 64.6 118.517 106.144 1 87 ? C1' SAH 501 B 1 HETATM 17 N N9 SAH . . . D 2 65.415 117.814 107.122 1 84.53 ? N9 SAH 501 B 1 HETATM 18 C C8 SAH . . . D 2 65.601 118.129 108.396 1 83.49 ? C8 SAH 501 B 1 HETATM 19 N N7 SAH . . . D 2 66.417 117.232 108.955 1 81.88 ? N7 SAH 501 B 1 HETATM 20 C C5 SAH . . . D 2 66.756 116.332 108.014 1 81.91 ? C5 SAH 501 B 1 HETATM 21 C C6 SAH . . . D 2 67.568 115.184 107.996 1 80.63 ? C6 SAH 501 B 1 HETATM 22 N N6 SAH . . . D 2 68.224 114.775 109.143 1 78.4 ? N6 SAH 501 B 1 HETATM 23 N N1 SAH . . . D 2 67.697 114.502 106.89 1 81.77 ? N1 SAH 501 B 1 HETATM 24 C C2 SAH . . . D 2 67.076 114.874 105.781 1 83.49 ? C2 SAH 501 B 1 HETATM 25 N N3 SAH . . . D 2 66.298 115.958 105.76 1 84.28 ? N3 SAH 501 B 1 HETATM 26 C C4 SAH . . . D 2 66.126 116.69 106.847 1 83.67 ? C4 SAH 501 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #