data_5E9P # _model_server_result.job_id kAqRh28ZMTl8UQ-fxY0uGg _model_server_result.datetime_utc '2024-10-28 14:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5E9P # _exptl.entry_id 5E9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E9P _cell.length_a 58.517 _cell.length_b 58.517 _cell.length_c 33.437 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 205 n n C1 C3 MLI sing 206 n n C1 H11 MLI sing 207 n n C1 H12 MLI sing 208 n n C2 O6 MLI doub 209 n n C2 O7 MLI sing 210 n n C3 O8 MLI doub 211 n n C3 O9 MLI sing 212 n n # _atom_sites.entry_id 5E9P _atom_sites.fract_transf_matrix[1][1] 0.017089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 601 1 MLI MLI . C 3 HOH A 1 701 29 HOH HOH . C 3 HOH A 2 702 136 HOH HOH . C 3 HOH A 3 703 66 HOH HOH . C 3 HOH A 4 704 116 HOH HOH . C 3 HOH A 5 705 126 HOH HOH . C 3 HOH A 6 706 93 HOH HOH . C 3 HOH A 7 707 92 HOH HOH . C 3 HOH A 8 708 20 HOH HOH . C 3 HOH A 9 709 15 HOH HOH . C 3 HOH A 10 710 75 HOH HOH . C 3 HOH A 11 711 62 HOH HOH . C 3 HOH A 12 712 89 HOH HOH . C 3 HOH A 13 713 68 HOH HOH . C 3 HOH A 14 714 14 HOH HOH . C 3 HOH A 15 715 40 HOH HOH . C 3 HOH A 16 716 60 HOH HOH . C 3 HOH A 17 717 85 HOH HOH . C 3 HOH A 18 718 96 HOH HOH . C 3 HOH A 19 719 111 HOH HOH . C 3 HOH A 20 720 4 HOH HOH . C 3 HOH A 21 721 37 HOH HOH . C 3 HOH A 22 722 105 HOH HOH . C 3 HOH A 23 723 90 HOH HOH . C 3 HOH A 24 724 80 HOH HOH . C 3 HOH A 25 725 27 HOH HOH . C 3 HOH A 26 726 19 HOH HOH . C 3 HOH A 27 727 97 HOH HOH . C 3 HOH A 28 728 57 HOH HOH . C 3 HOH A 29 729 1 HOH HOH . C 3 HOH A 30 730 51 HOH HOH . C 3 HOH A 31 731 13 HOH HOH . C 3 HOH A 32 732 63 HOH HOH . C 3 HOH A 33 733 84 HOH HOH . C 3 HOH A 34 734 56 HOH HOH . C 3 HOH A 35 735 128 HOH HOH . C 3 HOH A 36 736 21 HOH HOH . C 3 HOH A 37 737 23 HOH HOH . C 3 HOH A 38 738 87 HOH HOH . C 3 HOH A 39 739 43 HOH HOH . C 3 HOH A 40 740 12 HOH HOH . C 3 HOH A 41 741 55 HOH HOH . C 3 HOH A 42 742 86 HOH HOH . C 3 HOH A 43 743 34 HOH HOH . C 3 HOH A 44 744 52 HOH HOH . C 3 HOH A 45 745 25 HOH HOH . C 3 HOH A 46 746 16 HOH HOH . C 3 HOH A 47 747 120 HOH HOH . C 3 HOH A 48 748 38 HOH HOH . C 3 HOH A 49 749 35 HOH HOH . C 3 HOH A 50 750 18 HOH HOH . C 3 HOH A 51 751 133 HOH HOH . C 3 HOH A 52 752 108 HOH HOH . C 3 HOH A 53 753 9 HOH HOH . C 3 HOH A 54 754 91 HOH HOH . C 3 HOH A 55 755 70 HOH HOH . C 3 HOH A 56 756 46 HOH HOH . C 3 HOH A 57 757 44 HOH HOH . C 3 HOH A 58 758 95 HOH HOH . C 3 HOH A 59 759 83 HOH HOH . C 3 HOH A 60 760 100 HOH HOH . C 3 HOH A 61 761 72 HOH HOH . C 3 HOH A 62 762 2 HOH HOH . C 3 HOH A 63 763 110 HOH HOH . C 3 HOH A 64 764 135 HOH HOH . C 3 HOH A 65 765 5 HOH HOH . C 3 HOH A 66 766 30 HOH HOH . C 3 HOH A 67 767 76 HOH HOH . C 3 HOH A 68 768 26 HOH HOH . C 3 HOH A 69 769 22 HOH HOH . C 3 HOH A 70 770 31 HOH HOH . C 3 HOH A 71 771 10 HOH HOH . C 3 HOH A 72 772 131 HOH HOH . C 3 HOH A 73 773 118 HOH HOH . C 3 HOH A 74 774 3 HOH HOH . C 3 HOH A 75 775 59 HOH HOH . C 3 HOH A 76 776 8 HOH HOH . C 3 HOH A 77 777 77 HOH HOH . C 3 HOH A 78 778 48 HOH HOH . C 3 HOH A 79 779 65 HOH HOH . C 3 HOH A 80 780 6 HOH HOH . C 3 HOH A 81 781 39 HOH HOH . C 3 HOH A 82 782 103 HOH HOH . C 3 HOH A 83 783 28 HOH HOH . C 3 HOH A 84 784 106 HOH HOH . C 3 HOH A 85 785 109 HOH HOH . C 3 HOH A 86 786 53 HOH HOH . C 3 HOH A 87 787 82 HOH HOH . C 3 HOH A 88 788 124 HOH HOH . C 3 HOH A 89 789 74 HOH HOH . C 3 HOH A 90 790 114 HOH HOH . C 3 HOH A 91 791 121 HOH HOH . C 3 HOH A 92 792 117 HOH HOH . C 3 HOH A 93 793 50 HOH HOH . C 3 HOH A 94 794 102 HOH HOH . C 3 HOH A 95 795 49 HOH HOH . C 3 HOH A 96 796 45 HOH HOH . C 3 HOH A 97 797 115 HOH HOH . C 3 HOH A 98 798 127 HOH HOH . C 3 HOH A 99 799 138 HOH HOH . C 3 HOH A 100 800 98 HOH HOH . C 3 HOH A 101 801 112 HOH HOH . C 3 HOH A 102 802 137 HOH HOH . C 3 HOH A 103 803 36 HOH HOH . C 3 HOH A 104 804 17 HOH HOH . C 3 HOH A 105 805 125 HOH HOH . C 3 HOH A 106 806 61 HOH HOH . C 3 HOH A 107 807 79 HOH HOH . C 3 HOH A 108 808 134 HOH HOH . C 3 HOH A 109 809 71 HOH HOH . C 3 HOH A 110 810 42 HOH HOH . C 3 HOH A 111 811 130 HOH HOH . C 3 HOH A 112 812 58 HOH HOH . C 3 HOH A 113 813 94 HOH HOH . C 3 HOH A 114 814 7 HOH HOH . C 3 HOH A 115 815 54 HOH HOH . C 3 HOH A 116 816 32 HOH HOH . C 3 HOH A 117 817 107 HOH HOH . C 3 HOH A 118 818 33 HOH HOH . C 3 HOH A 119 819 78 HOH HOH . C 3 HOH A 120 820 129 HOH HOH . C 3 HOH A 121 821 119 HOH HOH . C 3 HOH A 122 822 122 HOH HOH . C 3 HOH A 123 823 113 HOH HOH . C 3 HOH A 124 824 101 HOH HOH . C 3 HOH A 125 825 123 HOH HOH . C 3 HOH A 126 826 104 HOH HOH . C 3 HOH A 127 827 41 HOH HOH . C 3 HOH A 128 828 64 HOH HOH . C 3 HOH A 129 829 81 HOH HOH . C 3 HOH A 130 830 99 HOH HOH . C 3 HOH A 131 831 88 HOH HOH . C 3 HOH A 132 832 47 HOH HOH . C 3 HOH A 133 833 67 HOH HOH . C 3 HOH A 134 834 11 HOH HOH . C 3 HOH A 135 835 24 HOH HOH . C 3 HOH A 136 836 69 HOH HOH . C 3 HOH A 137 837 139 HOH HOH . C 3 HOH A 138 838 132 HOH HOH . C 3 HOH A 139 839 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . A . B 2 104.321 8.962 -2.375 0.5 27.02 ? C1 MLI 601 A 1 HETATM 2 C C1 MLI . B . B 2 103.971 9.415 -2.537 0.5 28.49 ? C1 MLI 601 A 1 HETATM 3 C C2 MLI . A . B 2 103.185 8.598 -1.448 0.5 27.37 ? C2 MLI 601 A 1 HETATM 4 C C2 MLI . B . B 2 103.122 8.722 -1.485 0.5 27.88 ? C2 MLI 601 A 1 HETATM 5 C C3 MLI . A . B 2 104.577 10.395 -2.564 0.5 34.57 ? C3 MLI 601 A 1 HETATM 6 C C3 MLI . B . B 2 105.048 10.27 -1.982 0.5 31.74 ? C3 MLI 601 A 1 HETATM 7 O O6 MLI . A . B 2 103.38 7.436 -1.172 0.5 25.33 ? O6 MLI 601 A 1 HETATM 8 O O6 MLI . B . B 2 103.438 7.56 -1.236 0.5 25.22 ? O6 MLI 601 A 1 HETATM 9 O O7 MLI . A . B 2 102.156 9.277 -1.105 0.5 28.07 ? O7 MLI 601 A 1 HETATM 10 O O7 MLI . B . B 2 102.103 9.282 -1.01 0.5 28.6 ? O7 MLI 601 A 1 HETATM 11 O O8 MLI . A . B 2 105.786 10.723 -2.775 0.5 23.88 ? O8 MLI 601 A 1 HETATM 12 O O8 MLI . B . B 2 105.818 10.764 -2.837 0.5 24.38 ? O8 MLI 601 A 1 HETATM 13 O O9 MLI . A . B 2 103.548 11.091 -2.544 0.5 39.87 ? O9 MLI 601 A 1 HETATM 14 O O9 MLI . B . B 2 105.052 10.455 -0.765 0.5 41.3 ? O9 MLI 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #