data_5E9V
#
_model_server_result.job_id            nwjAHLsNDQEH5ZStLjNehQ 
_model_server_result.datetime_utc      '2024-11-27 03:12:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e9v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5E9V 
#
_exptl.entry_id    5E9V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.17 
_cell.angle_gamma         90 
_cell.entry_id            5E9V 
_cell.length_a            58.381 
_cell.length_b            37.96 
_cell.length_c            60.551 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E9V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 134 n n 
C1 C2 EDO sing 135 n n 
C1 H11 EDO sing 136 n n 
C1 H12 EDO sing 137 n n 
O1 HO1 EDO sing 138 n n 
C2 O2 EDO sing 139 n n 
C2 H21 EDO sing 140 n n 
C2 H22 EDO sing 141 n n 
O2 HO2 EDO sing 142 n n 
#
_atom_sites.entry_id                     5E9V 
_atom_sites.fract_transf_matrix[1][1]    0.017129 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004967 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026344 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017195 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5L0 A 1 301 2 5L0 DRG . 
D 3 EDO A 1 302 2 EDO EDO . 
E 2 5L0 B 1 301 1 5L0 DRG . 
F 3 EDO B 1 302 1 EDO EDO . 
G 4 HOH A 1 401 19 HOH HOH . 
G 4 HOH A 2 402 91 HOH HOH . 
G 4 HOH A 3 403 50 HOH HOH . 
G 4 HOH A 4 404 84 HOH HOH . 
G 4 HOH A 5 405 14 HOH HOH . 
G 4 HOH A 6 406 51 HOH HOH . 
G 4 HOH A 7 407 69 HOH HOH . 
G 4 HOH A 8 408 62 HOH HOH . 
G 4 HOH A 9 409 61 HOH HOH . 
G 4 HOH A 10 410 100 HOH HOH . 
G 4 HOH A 11 411 81 HOH HOH . 
G 4 HOH A 12 412 101 HOH HOH . 
G 4 HOH A 13 413 71 HOH HOH . 
G 4 HOH A 14 414 57 HOH HOH . 
G 4 HOH A 15 415 63 HOH HOH . 
G 4 HOH A 16 416 17 HOH HOH . 
G 4 HOH A 17 417 59 HOH HOH . 
G 4 HOH A 18 418 45 HOH HOH . 
G 4 HOH A 19 419 95 HOH HOH . 
G 4 HOH A 20 420 130 HOH HOH . 
G 4 HOH A 21 421 78 HOH HOH . 
G 4 HOH A 22 422 15 HOH HOH . 
G 4 HOH A 23 423 106 HOH HOH . 
G 4 HOH A 24 424 125 HOH HOH . 
G 4 HOH A 25 425 67 HOH HOH . 
G 4 HOH A 26 426 39 HOH HOH . 
G 4 HOH A 27 427 49 HOH HOH . 
G 4 HOH A 28 428 108 HOH HOH . 
G 4 HOH A 29 429 80 HOH HOH . 
G 4 HOH A 30 430 48 HOH HOH . 
G 4 HOH A 31 431 73 HOH HOH . 
G 4 HOH A 32 432 29 HOH HOH . 
G 4 HOH A 33 433 124 HOH HOH . 
G 4 HOH A 34 434 25 HOH HOH . 
G 4 HOH A 35 435 41 HOH HOH . 
G 4 HOH A 36 436 93 HOH HOH . 
G 4 HOH A 37 437 98 HOH HOH . 
G 4 HOH A 38 438 92 HOH HOH . 
G 4 HOH A 39 439 83 HOH HOH . 
G 4 HOH A 40 440 129 HOH HOH . 
G 4 HOH A 41 441 109 HOH HOH . 
G 4 HOH A 42 442 79 HOH HOH . 
G 4 HOH A 43 443 122 HOH HOH . 
G 4 HOH A 44 444 82 HOH HOH . 
G 4 HOH A 45 445 105 HOH HOH . 
G 4 HOH A 46 446 103 HOH HOH . 
G 4 HOH A 47 447 110 HOH HOH . 
G 4 HOH A 48 448 104 HOH HOH . 
H 4 HOH B 1 401 119 HOH HOH . 
H 4 HOH B 2 402 127 HOH HOH . 
H 4 HOH B 3 403 114 HOH HOH . 
H 4 HOH B 4 404 107 HOH HOH . 
H 4 HOH B 5 405 102 HOH HOH . 
H 4 HOH B 6 406 9 HOH HOH . 
H 4 HOH B 7 407 18 HOH HOH . 
H 4 HOH B 8 408 123 HOH HOH . 
H 4 HOH B 9 409 86 HOH HOH . 
H 4 HOH B 10 410 26 HOH HOH . 
H 4 HOH B 11 411 21 HOH HOH . 
H 4 HOH B 12 412 58 HOH HOH . 
H 4 HOH B 13 413 65 HOH HOH . 
H 4 HOH B 14 414 24 HOH HOH . 
H 4 HOH B 15 415 40 HOH HOH . 
H 4 HOH B 16 416 34 HOH HOH . 
H 4 HOH B 17 417 85 HOH HOH . 
H 4 HOH B 18 418 35 HOH HOH . 
H 4 HOH B 19 419 97 HOH HOH . 
H 4 HOH B 20 420 88 HOH HOH . 
H 4 HOH B 21 421 31 HOH HOH . 
H 4 HOH B 22 422 117 HOH HOH . 
H 4 HOH B 23 423 55 HOH HOH . 
H 4 HOH B 24 424 128 HOH HOH . 
H 4 HOH B 25 425 5 HOH HOH . 
H 4 HOH B 26 426 37 HOH HOH . 
H 4 HOH B 27 427 12 HOH HOH . 
H 4 HOH B 28 428 2 HOH HOH . 
H 4 HOH B 29 429 3 HOH HOH . 
H 4 HOH B 30 430 30 HOH HOH . 
H 4 HOH B 31 431 36 HOH HOH . 
H 4 HOH B 32 432 16 HOH HOH . 
H 4 HOH B 33 433 38 HOH HOH . 
H 4 HOH B 34 434 20 HOH HOH . 
H 4 HOH B 35 435 56 HOH HOH . 
H 4 HOH B 36 436 54 HOH HOH . 
H 4 HOH B 37 437 10 HOH HOH . 
H 4 HOH B 38 438 7 HOH HOH . 
H 4 HOH B 39 439 96 HOH HOH . 
H 4 HOH B 40 440 13 HOH HOH . 
H 4 HOH B 41 441 23 HOH HOH . 
H 4 HOH B 42 442 74 HOH HOH . 
H 4 HOH B 43 443 60 HOH HOH . 
H 4 HOH B 44 444 120 HOH HOH . 
H 4 HOH B 45 445 6 HOH HOH . 
H 4 HOH B 46 446 136 HOH HOH . 
H 4 HOH B 47 447 22 HOH HOH . 
H 4 HOH B 48 448 133 HOH HOH . 
H 4 HOH B 49 449 42 HOH HOH . 
H 4 HOH B 50 450 11 HOH HOH . 
H 4 HOH B 51 451 43 HOH HOH . 
H 4 HOH B 52 452 1 HOH HOH . 
H 4 HOH B 53 453 46 HOH HOH . 
H 4 HOH B 54 454 90 HOH HOH . 
H 4 HOH B 55 455 112 HOH HOH . 
H 4 HOH B 56 456 126 HOH HOH . 
H 4 HOH B 57 457 72 HOH HOH . 
H 4 HOH B 58 458 66 HOH HOH . 
H 4 HOH B 59 459 33 HOH HOH . 
H 4 HOH B 60 460 111 HOH HOH . 
H 4 HOH B 61 461 32 HOH HOH . 
H 4 HOH B 62 462 94 HOH HOH . 
H 4 HOH B 63 463 28 HOH HOH . 
H 4 HOH B 64 464 132 HOH HOH . 
H 4 HOH B 65 465 70 HOH HOH . 
H 4 HOH B 66 466 4 HOH HOH . 
H 4 HOH B 67 467 53 HOH HOH . 
H 4 HOH B 68 468 121 HOH HOH . 
H 4 HOH B 69 469 52 HOH HOH . 
H 4 HOH B 70 470 118 HOH HOH . 
H 4 HOH B 71 471 76 HOH HOH . 
H 4 HOH B 72 472 135 HOH HOH . 
H 4 HOH B 73 473 89 HOH HOH . 
H 4 HOH B 74 474 131 HOH HOH . 
H 4 HOH B 75 475 75 HOH HOH . 
H 4 HOH B 76 476 87 HOH HOH . 
H 4 HOH B 77 477 64 HOH HOH . 
H 4 HOH B 78 478 115 HOH HOH . 
H 4 HOH B 79 479 47 HOH HOH . 
H 4 HOH B 80 480 8 HOH HOH . 
H 4 HOH B 81 481 68 HOH HOH . 
H 4 HOH B 82 482 113 HOH HOH . 
H 4 HOH B 83 483 134 HOH HOH . 
H 4 HOH B 84 484 77 HOH HOH . 
H 4 HOH B 85 485 99 HOH HOH . 
H 4 HOH B 86 486 116 HOH HOH . 
H 4 HOH B 87 487 27 HOH HOH . 
H 4 HOH B 88 488 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 52.205 5.556 1.104 1 41.34 ? C1 EDO 302 A 1 
HETATM 2 O O1 EDO . . . D 3 52.965 6.641 0.508 1 38.3 ? O1 EDO 302 A 1 
HETATM 3 C C2 EDO . . . D 3 53.069 4.48 1.716 1 37.13 ? C2 EDO 302 A 1 
HETATM 4 O O2 EDO . . . D 3 52.326 3.284 1.813 1 36.87 ? O2 EDO 302 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#