data_5EA1
#
_model_server_result.job_id            WM5592xLGQzbhYp3ofqO4Q 
_model_server_result.datetime_utc      '2024-11-19 14:34:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ea1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1601}' 
#
_entry.id    5EA1 
#
_exptl.entry_id    5EA1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5EA1 
_cell.length_a            86.783 
_cell.length_b            86.783 
_cell.length_c            97.959 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EA1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J 1 1 
B,F,G,K 2 1 
C,H,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 258 n n 
C1 H1C1 MRD sing 259 n n 
C1 H1C2 MRD sing 260 n n 
C1 H1C3 MRD sing 261 n n 
C2 O2 MRD sing 262 n n 
C2 CM MRD sing 263 n n 
C2 C3 MRD sing 264 n n 
O2 H2 MRD sing 265 n n 
CM HMC1 MRD sing 266 n n 
CM HMC2 MRD sing 267 n n 
CM HMC3 MRD sing 268 n n 
C3 C4 MRD sing 269 n n 
C3 H3C1 MRD sing 270 n n 
C3 H3C2 MRD sing 271 n n 
C4 O4 MRD sing 272 n n 
C4 C5 MRD sing 273 n n 
C4 H4 MRD sing 274 n n 
O4 HA MRD sing 275 n n 
C5 H5C1 MRD sing 276 n n 
C5 H5C2 MRD sing 277 n n 
C5 H5C3 MRD sing 278 n n 
#
_atom_sites.entry_id                     5EA1 
_atom_sites.fract_transf_matrix[1][1]    0.011523 
_atom_sites.fract_transf_matrix[1][2]    0.006653 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013306 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010208 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MRD A 1 1601 5 MRD MRD . 
E 3 MPD A 1 1602 6 MPD MPD . 
F 2 MRD B 1 1601 1 MRD MRD . 
G 3 MPD B 1 1602 2 MPD MPD . 
H 2 MRD C 1 1601 3 MRD MRD . 
I 3 MPD C 1 1602 4 MPD MPD . 
J 4 HOH A 1 1701 32 HOH HOH . 
J 4 HOH A 2 1702 141 HOH HOH . 
J 4 HOH A 3 1703 134 HOH HOH . 
J 4 HOH A 4 1704 190 HOH HOH . 
J 4 HOH A 5 1705 161 HOH HOH . 
J 4 HOH A 6 1706 24 HOH HOH . 
J 4 HOH A 7 1707 186 HOH HOH . 
J 4 HOH A 8 1708 224 HOH HOH . 
J 4 HOH A 9 1709 198 HOH HOH . 
J 4 HOH A 10 1710 110 HOH HOH . 
J 4 HOH A 11 1711 9 HOH HOH . 
J 4 HOH A 12 1712 22 HOH HOH . 
J 4 HOH A 13 1713 1 HOH HOH . 
J 4 HOH A 14 1714 47 HOH HOH . 
J 4 HOH A 15 1715 85 HOH HOH . 
J 4 HOH A 16 1716 103 HOH HOH . 
J 4 HOH A 17 1717 115 HOH HOH . 
J 4 HOH A 18 1718 216 HOH HOH . 
J 4 HOH A 19 1719 107 HOH HOH . 
J 4 HOH A 20 1720 41 HOH HOH . 
J 4 HOH A 21 1721 89 HOH HOH . 
J 4 HOH A 22 1722 121 HOH HOH . 
J 4 HOH A 23 1723 8 HOH HOH . 
J 4 HOH A 24 1724 62 HOH HOH . 
J 4 HOH A 25 1725 77 HOH HOH . 
J 4 HOH A 26 1726 171 HOH HOH . 
J 4 HOH A 27 1727 213 HOH HOH . 
J 4 HOH A 28 1728 222 HOH HOH . 
J 4 HOH A 29 1729 113 HOH HOH . 
J 4 HOH A 30 1730 183 HOH HOH . 
J 4 HOH A 31 1731 109 HOH HOH . 
J 4 HOH A 32 1732 152 HOH HOH . 
J 4 HOH A 33 1733 217 HOH HOH . 
J 4 HOH A 34 1734 36 HOH HOH . 
J 4 HOH A 35 1735 158 HOH HOH . 
J 4 HOH A 36 1736 34 HOH HOH . 
J 4 HOH A 37 1737 83 HOH HOH . 
J 4 HOH A 38 1738 105 HOH HOH . 
J 4 HOH A 39 1739 143 HOH HOH . 
J 4 HOH A 40 1740 84 HOH HOH . 
J 4 HOH A 41 1741 52 HOH HOH . 
J 4 HOH A 42 1742 45 HOH HOH . 
J 4 HOH A 43 1743 50 HOH HOH . 
J 4 HOH A 44 1744 226 HOH HOH . 
J 4 HOH A 45 1745 63 HOH HOH . 
J 4 HOH A 46 1746 150 HOH HOH . 
J 4 HOH A 47 1747 225 HOH HOH . 
J 4 HOH A 48 1748 202 HOH HOH . 
J 4 HOH A 49 1749 10 HOH HOH . 
J 4 HOH A 50 1750 65 HOH HOH . 
J 4 HOH A 51 1751 39 HOH HOH . 
J 4 HOH A 52 1752 151 HOH HOH . 
J 4 HOH A 53 1753 148 HOH HOH . 
J 4 HOH A 54 1754 116 HOH HOH . 
J 4 HOH A 55 1755 219 HOH HOH . 
J 4 HOH A 56 1756 154 HOH HOH . 
J 4 HOH A 57 1757 30 HOH HOH . 
J 4 HOH A 58 1758 147 HOH HOH . 
J 4 HOH A 59 1759 162 HOH HOH . 
J 4 HOH A 60 1760 179 HOH HOH . 
J 4 HOH A 61 1761 156 HOH HOH . 
J 4 HOH A 62 1762 99 HOH HOH . 
J 4 HOH A 63 1763 214 HOH HOH . 
J 4 HOH A 64 1764 111 HOH HOH . 
J 4 HOH A 65 1765 185 HOH HOH . 
J 4 HOH A 66 1766 221 HOH HOH . 
J 4 HOH A 67 1767 195 HOH HOH . 
J 4 HOH A 68 1768 212 HOH HOH . 
J 4 HOH A 69 1769 232 HOH HOH . 
J 4 HOH A 70 1770 94 HOH HOH . 
J 4 HOH A 71 1771 70 HOH HOH . 
J 4 HOH A 72 1772 207 HOH HOH . 
J 4 HOH A 73 1773 157 HOH HOH . 
K 4 HOH B 1 1701 139 HOH HOH . 
K 4 HOH B 2 1702 91 HOH HOH . 
K 4 HOH B 3 1703 53 HOH HOH . 
K 4 HOH B 4 1704 26 HOH HOH . 
K 4 HOH B 5 1705 69 HOH HOH . 
K 4 HOH B 6 1706 38 HOH HOH . 
K 4 HOH B 7 1707 75 HOH HOH . 
K 4 HOH B 8 1708 51 HOH HOH . 
K 4 HOH B 9 1709 55 HOH HOH . 
K 4 HOH B 10 1710 12 HOH HOH . 
K 4 HOH B 11 1711 135 HOH HOH . 
K 4 HOH B 12 1712 144 HOH HOH . 
K 4 HOH B 13 1713 74 HOH HOH . 
K 4 HOH B 14 1714 181 HOH HOH . 
K 4 HOH B 15 1715 21 HOH HOH . 
K 4 HOH B 16 1716 28 HOH HOH . 
K 4 HOH B 17 1717 96 HOH HOH . 
K 4 HOH B 18 1718 101 HOH HOH . 
K 4 HOH B 19 1719 129 HOH HOH . 
K 4 HOH B 20 1720 35 HOH HOH . 
K 4 HOH B 21 1721 7 HOH HOH . 
K 4 HOH B 22 1722 128 HOH HOH . 
K 4 HOH B 23 1723 17 HOH HOH . 
K 4 HOH B 24 1724 138 HOH HOH . 
K 4 HOH B 25 1725 18 HOH HOH . 
K 4 HOH B 26 1726 54 HOH HOH . 
K 4 HOH B 27 1727 20 HOH HOH . 
K 4 HOH B 28 1728 44 HOH HOH . 
K 4 HOH B 29 1729 87 HOH HOH . 
K 4 HOH B 30 1730 206 HOH HOH . 
K 4 HOH B 31 1731 133 HOH HOH . 
K 4 HOH B 32 1732 48 HOH HOH . 
K 4 HOH B 33 1733 95 HOH HOH . 
K 4 HOH B 34 1734 108 HOH HOH . 
K 4 HOH B 35 1735 6 HOH HOH . 
K 4 HOH B 36 1736 182 HOH HOH . 
K 4 HOH B 37 1737 200 HOH HOH . 
K 4 HOH B 38 1738 218 HOH HOH . 
K 4 HOH B 39 1739 142 HOH HOH . 
K 4 HOH B 40 1740 43 HOH HOH . 
K 4 HOH B 41 1741 25 HOH HOH . 
K 4 HOH B 42 1742 140 HOH HOH . 
K 4 HOH B 43 1743 72 HOH HOH . 
K 4 HOH B 44 1744 23 HOH HOH . 
K 4 HOH B 45 1745 73 HOH HOH . 
K 4 HOH B 46 1746 104 HOH HOH . 
K 4 HOH B 47 1747 40 HOH HOH . 
K 4 HOH B 48 1748 19 HOH HOH . 
K 4 HOH B 49 1749 37 HOH HOH . 
K 4 HOH B 50 1750 31 HOH HOH . 
K 4 HOH B 51 1751 59 HOH HOH . 
K 4 HOH B 52 1752 80 HOH HOH . 
K 4 HOH B 53 1753 82 HOH HOH . 
K 4 HOH B 54 1754 196 HOH HOH . 
K 4 HOH B 55 1755 61 HOH HOH . 
K 4 HOH B 56 1756 16 HOH HOH . 
K 4 HOH B 57 1757 114 HOH HOH . 
K 4 HOH B 58 1758 15 HOH HOH . 
K 4 HOH B 59 1759 56 HOH HOH . 
K 4 HOH B 60 1760 178 HOH HOH . 
K 4 HOH B 61 1761 79 HOH HOH . 
K 4 HOH B 62 1762 122 HOH HOH . 
K 4 HOH B 63 1763 137 HOH HOH . 
K 4 HOH B 64 1764 193 HOH HOH . 
K 4 HOH B 65 1765 66 HOH HOH . 
K 4 HOH B 66 1766 231 HOH HOH . 
K 4 HOH B 67 1767 160 HOH HOH . 
K 4 HOH B 68 1768 155 HOH HOH . 
K 4 HOH B 69 1769 127 HOH HOH . 
K 4 HOH B 70 1770 120 HOH HOH . 
K 4 HOH B 71 1771 205 HOH HOH . 
K 4 HOH B 72 1772 76 HOH HOH . 
K 4 HOH B 73 1773 71 HOH HOH . 
K 4 HOH B 74 1774 201 HOH HOH . 
K 4 HOH B 75 1775 230 HOH HOH . 
K 4 HOH B 76 1776 215 HOH HOH . 
K 4 HOH B 77 1777 220 HOH HOH . 
K 4 HOH B 78 1778 78 HOH HOH . 
K 4 HOH B 79 1779 60 HOH HOH . 
K 4 HOH B 80 1780 188 HOH HOH . 
K 4 HOH B 81 1781 229 HOH HOH . 
K 4 HOH B 82 1782 203 HOH HOH . 
K 4 HOH B 83 1783 153 HOH HOH . 
K 4 HOH B 84 1784 197 HOH HOH . 
K 4 HOH B 85 1785 208 HOH HOH . 
K 4 HOH B 86 1786 149 HOH HOH . 
K 4 HOH B 87 1787 211 HOH HOH . 
L 4 HOH C 1 1701 46 HOH HOH . 
L 4 HOH C 2 1702 49 HOH HOH . 
L 4 HOH C 3 1703 176 HOH HOH . 
L 4 HOH C 4 1704 29 HOH HOH . 
L 4 HOH C 5 1705 14 HOH HOH . 
L 4 HOH C 6 1706 33 HOH HOH . 
L 4 HOH C 7 1707 4 HOH HOH . 
L 4 HOH C 8 1708 112 HOH HOH . 
L 4 HOH C 9 1709 88 HOH HOH . 
L 4 HOH C 10 1710 124 HOH HOH . 
L 4 HOH C 11 1711 98 HOH HOH . 
L 4 HOH C 12 1712 100 HOH HOH . 
L 4 HOH C 13 1713 228 HOH HOH . 
L 4 HOH C 14 1714 175 HOH HOH . 
L 4 HOH C 15 1715 174 HOH HOH . 
L 4 HOH C 16 1716 5 HOH HOH . 
L 4 HOH C 17 1717 170 HOH HOH . 
L 4 HOH C 18 1718 42 HOH HOH . 
L 4 HOH C 19 1719 68 HOH HOH . 
L 4 HOH C 20 1720 57 HOH HOH . 
L 4 HOH C 21 1721 13 HOH HOH . 
L 4 HOH C 22 1722 145 HOH HOH . 
L 4 HOH C 23 1723 146 HOH HOH . 
L 4 HOH C 24 1724 123 HOH HOH . 
L 4 HOH C 25 1725 11 HOH HOH . 
L 4 HOH C 26 1726 2 HOH HOH . 
L 4 HOH C 27 1727 189 HOH HOH . 
L 4 HOH C 28 1728 177 HOH HOH . 
L 4 HOH C 29 1729 106 HOH HOH . 
L 4 HOH C 30 1730 27 HOH HOH . 
L 4 HOH C 31 1731 118 HOH HOH . 
L 4 HOH C 32 1732 58 HOH HOH . 
L 4 HOH C 33 1733 184 HOH HOH . 
L 4 HOH C 34 1734 204 HOH HOH . 
L 4 HOH C 35 1735 3 HOH HOH . 
L 4 HOH C 36 1736 125 HOH HOH . 
L 4 HOH C 37 1737 92 HOH HOH . 
L 4 HOH C 38 1738 131 HOH HOH . 
L 4 HOH C 39 1739 165 HOH HOH . 
L 4 HOH C 40 1740 172 HOH HOH . 
L 4 HOH C 41 1741 86 HOH HOH . 
L 4 HOH C 42 1742 93 HOH HOH . 
L 4 HOH C 43 1743 90 HOH HOH . 
L 4 HOH C 44 1744 97 HOH HOH . 
L 4 HOH C 45 1745 227 HOH HOH . 
L 4 HOH C 46 1746 64 HOH HOH . 
L 4 HOH C 47 1747 159 HOH HOH . 
L 4 HOH C 48 1748 126 HOH HOH . 
L 4 HOH C 49 1749 163 HOH HOH . 
L 4 HOH C 50 1750 191 HOH HOH . 
L 4 HOH C 51 1751 136 HOH HOH . 
L 4 HOH C 52 1752 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . F 2 -22.073 -17.938 -26.864 0.94 26.72 ? C1 MRD 1601 B 1 
HETATM 2 C C2 MRD . . . F 2 -21.952 -19.234 -26.068 0.94 25.51 ? C2 MRD 1601 B 1 
HETATM 3 O O2 MRD . . . F 2 -22.775 -19.116 -24.882 0.94 24.59 ? O2 MRD 1601 B 1 
HETATM 4 C CM MRD . . . F 2 -22.465 -20.409 -26.888 0.94 27.04 ? CM MRD 1601 B 1 
HETATM 5 C C3 MRD . . . F 2 -20.507 -19.484 -25.647 0.94 24.93 ? C3 MRD 1601 B 1 
HETATM 6 C C4 MRD . . . F 2 -20.414 -20.196 -24.3 0.94 25.86 ? C4 MRD 1601 B 1 
HETATM 7 O O4 MRD . . . F 2 -20.916 -19.379 -23.259 0.94 25.41 ? O4 MRD 1601 B 1 
HETATM 8 C C5 MRD . . . F 2 -18.972 -20.589 -23.988 0.94 26.02 ? C5 MRD 1601 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           483 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           8 
#