data_5EA6 # _model_server_result.job_id zzB-2hi85Mn9DBqbVfU8UA _model_server_result.datetime_utc '2024-11-28 08:02:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ea6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 5EA6 # _exptl.entry_id 5EA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.822 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9~{b}~{R})-9~{b}-(4-chlorophenyl)-1-pyridin-3-ylcarbonyl-2,3-dihydroimidazo[5,6]pyrrolo[1,2-~{a}]pyridin-5-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EA6 _cell.length_a 170.16 _cell.length_b 170.16 _cell.length_c 170.16 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 F CYS 37 1_555 A SG CYS 439 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 155 F CYS 155 1_555 A SG CYS 290 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 313 F CYS 313 1_555 A SG CYS 343 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 322 F CYS 322 1_555 A SG CYS 333 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 358 F CYS 358 1_555 A SG CYS 367 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 A SG CYS 382 F CYS 382 1_555 A SG CYS 393 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 416 F CYS 416 1_555 A SG CYS 422 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C21 H15 Cl N4 O2' _chem_comp.formula_weight 390.822 _chem_comp.id 5NP _chem_comp.mon_nstd_flag . _chem_comp.name (9~{b}~{R})-9~{b}-(4-chlorophenyl)-1-pyridin-3-ylcarbonyl-2,3-dihydroimidazo[5,6]pyrrolo[1,2-~{a}]pyridin-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BTA-9881 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C24 5NP sing 1 n n C22 C24 5NP doub 2 n y C22 C17 5NP sing 3 n y C24 C23 5NP sing 4 n y C17 C12 5NP doub 5 n y C23 C18 5NP doub 6 n y N06 C16 5NP doub 7 n y N06 C21 5NP sing 8 n y C16 C11 5NP sing 9 n y C12 C18 5NP sing 10 n y C12 C08 5NP sing 11 n n C21 C19 5NP doub 12 n y C11 C08 5NP sing 13 n n C11 C14 5NP doub 14 n y O03 C15 5NP doub 15 n n C08 N05 5NP sing 16 n n C08 N04 5NP sing 17 n n C19 C14 5NP sing 18 n y C15 N05 5NP sing 19 n n C15 C20 5NP sing 20 n n C14 C13 5NP sing 21 n n N05 C10 5NP sing 22 n n C26 C20 5NP doub 23 n y C26 N07 5NP sing 24 n y C20 C25 5NP sing 25 n y N04 C13 5NP sing 26 n n N04 C09 5NP sing 27 n n C10 C09 5NP sing 28 n n C13 O02 5NP doub 29 n n N07 C28 5NP doub 30 n y C25 C27 5NP doub 31 n y C28 C27 5NP sing 32 n y C10 H1 5NP sing 33 n n C10 H2 5NP sing 34 n n C17 H3 5NP sing 35 n n C21 H4 5NP sing 36 n n C22 H5 5NP sing 37 n n C26 H6 5NP sing 38 n n C28 H7 5NP sing 39 n n C09 H8 5NP sing 40 n n C09 H9 5NP sing 41 n n C16 H10 5NP sing 42 n n C18 H11 5NP sing 43 n n C19 H12 5NP sing 44 n n C23 H13 5NP sing 45 n n C25 H14 5NP sing 46 n n C27 H15 5NP sing 47 n n # _atom_sites.entry_id 5EA6 _atom_sites.fract_transf_matrix[1][1] 0.005877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NHE F 1 601 1 NHE NHE . C 3 SO4 F 1 602 1 SO4 SO4 . D 3 SO4 F 1 603 2 SO4 SO4 . E 3 SO4 F 1 604 3 SO4 SO4 . F 3 SO4 F 1 605 4 SO4 SO4 . G 4 5NP F 1 606 1 5NP LIG . H 5 HOH F 1 701 13 HOH HOH . H 5 HOH F 2 702 11 HOH HOH . H 5 HOH F 3 703 30 HOH HOH . H 5 HOH F 4 704 1 HOH HOH . H 5 HOH F 5 705 10 HOH HOH . H 5 HOH F 6 706 14 HOH HOH . H 5 HOH F 7 707 2 HOH HOH . H 5 HOH F 8 708 20 HOH HOH . H 5 HOH F 9 709 6 HOH HOH . H 5 HOH F 10 710 15 HOH HOH . H 5 HOH F 11 711 9 HOH HOH . H 5 HOH F 12 712 12 HOH HOH . H 5 HOH F 13 713 3 HOH HOH . H 5 HOH F 14 714 26 HOH HOH . H 5 HOH F 15 715 7 HOH HOH . H 5 HOH F 16 716 5 HOH HOH . H 5 HOH F 17 717 28 HOH HOH . H 5 HOH F 18 718 22 HOH HOH . H 5 HOH F 19 719 17 HOH HOH . H 5 HOH F 20 720 23 HOH HOH . H 5 HOH F 21 721 16 HOH HOH . H 5 HOH F 22 722 21 HOH HOH . H 5 HOH F 23 723 19 HOH HOH . H 5 HOH F 24 724 4 HOH HOH . H 5 HOH F 25 725 24 HOH HOH . H 5 HOH F 26 726 18 HOH HOH . H 5 HOH F 27 727 25 HOH HOH . H 5 HOH F 28 728 27 HOH HOH . H 5 HOH F 29 729 29 HOH HOH . H 5 HOH F 30 730 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 5NP . . . G 4 19.262 21.094 21.591 0.33 72.76 ? C10 5NP 606 F 1 HETATM 2 C C13 5NP . . . G 4 21.612 18.55 21.615 0.33 71.97 ? C13 5NP 606 F 1 HETATM 3 C C15 5NP . . . G 4 17.483 19.195 20.489 0.33 72.85 ? C15 5NP 606 F 1 HETATM 4 C C17 5NP . . . G 4 19.596 20.178 17.57 0.33 70.86 ? C17 5NP 606 F 1 HETATM 5 C C20 5NP . . . G 4 16.223 19.611 21.236 0.33 71.52 ? C20 5NP 606 F 1 HETATM 6 C C21 5NP . . . G 4 21.314 15.25 19.202 0.33 71.7 ? C21 5NP 606 F 1 HETATM 7 C C22 5NP . . . G 4 19.991 20.979 16.34 0.33 71.79 ? C22 5NP 606 F 1 HETATM 8 C C24 5NP . . . G 4 21.185 21.919 16.408 0.33 71.58 ? C24 5NP 606 F 1 HETATM 9 C C26 5NP . . . G 4 15.047 18.656 21.156 0.33 71.58 ? C26 5NP 606 F 1 HETATM 10 C C28 5NP . . . G 4 13.757 20.198 22.714 0.33 73.44 ? C28 5NP 606 F 1 HETATM 11 CL CL1 5NP . . . G 4 21.659 22.858 15.03 0.33 75.18 ? CL1 5NP 606 F 1 HETATM 12 O O02 5NP . . . G 4 22.393 18.414 22.542 0.33 72.55 ? O02 5NP 606 F 1 HETATM 13 O O03 5NP . . . G 4 17.397 18.23 19.755 0.33 71.95 ? O03 5NP 606 F 1 HETATM 14 N N04 5NP . . . G 4 20.836 19.756 21.311 0.33 72.49 ? N04 5NP 606 F 1 HETATM 15 N N05 5NP . . . G 4 18.761 19.831 20.687 0.33 71.66 ? N05 5NP 606 F 1 HETATM 16 N N06 5NP . . . G 4 20.326 15.808 18.265 0.33 71.4 ? N06 5NP 606 F 1 HETATM 17 N N07 5NP . . . G 4 13.826 18.982 21.888 0.33 72.58 ? N07 5NP 606 F 1 HETATM 18 C C08 5NP . . . G 4 19.97 19.485 20.117 0.33 72.56 ? C08 5NP 606 F 1 HETATM 19 C C09 5NP . . . G 4 20.72 20.773 21.848 0.33 72.45 ? C09 5NP 606 F 1 HETATM 20 C C11 5NP . . . G 4 20.333 18.068 19.616 0.33 71.8 ? C11 5NP 606 F 1 HETATM 21 C C12 5NP . . . G 4 20.413 20.279 18.855 0.33 72.43 ? C12 5NP 606 F 1 HETATM 22 C C14 5NP . . . G 4 21.283 17.499 20.547 0.33 73.13 ? C14 5NP 606 F 1 HETATM 23 C C16 5NP . . . G 4 19.821 17.18 18.46 0.33 71.96 ? C16 5NP 606 F 1 HETATM 24 C C18 5NP . . . G 4 21.585 21.256 18.893 0.33 72.61 ? C18 5NP 606 F 1 HETATM 25 C C19 5NP . . . G 4 21.801 16.108 20.363 0.33 71.34 ? C19 5NP 606 F 1 HETATM 26 C C23 5NP . . . G 4 21.992 22.063 17.678 0.33 72.54 ? C23 5NP 606 F 1 HETATM 27 C C25 5NP . . . G 4 16.155 20.829 22.069 0.33 72.22 ? C25 5NP 606 F 1 HETATM 28 C C27 5NP . . . G 4 14.932 21.151 22.809 0.33 73.71 ? C27 5NP 606 F 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #