data_5EA7 # _model_server_result.job_id PNjVFT2y_GkEmHVvSWVvgg _model_server_result.datetime_utc '2024-10-18 02:18:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ea7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 5EA7 # _exptl.entry_id 5EA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.44 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopropyl-3-[[1-(4-oxidanylbutyl)benzimidazol-2-yl]methyl]imidazo[4,5-c]pyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EA7 _cell.length_a 169.59 _cell.length_b 169.59 _cell.length_c 169.59 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 F CYS 37 1_555 A SG CYS 439 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 155 F CYS 155 1_555 A SG CYS 290 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 313 F CYS 313 1_555 A SG CYS 343 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 322 F CYS 322 1_555 A SG CYS 333 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 358 F CYS 358 1_555 A SG CYS 367 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf6 A SG CYS 382 F CYS 382 1_555 A SG CYS 393 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 A SG CYS 416 F CYS 416 1_555 A SG CYS 422 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C21 H23 N5 O2' _chem_comp.formula_weight 377.44 _chem_comp.id 5NO _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopropyl-3-[[1-(4-oxidanylbutyl)benzimidazol-2-yl]methyl]imidazo[4,5-c]pyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BMS-433771 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C27 5NO sing 1 n n C26 C27 5NO sing 2 n n C26 C25 5NO sing 3 n n C25 C24 5NO sing 4 n n C24 N23 5NO sing 5 n n C21 C20 5NO doub 6 n y C21 C22 5NO sing 7 n y C20 C19 5NO sing 8 n y C22 N23 5NO sing 9 n y C22 C17 5NO doub 10 n y N23 C15 5NO sing 11 n y C19 C18 5NO doub 12 n y C02 C03 5NO sing 13 n n C02 C01 5NO sing 14 n n O13 C12 5NO doub 15 n n C17 C18 5NO sing 16 n y C17 N16 5NO sing 17 n y C15 C14 5NO sing 18 n n C15 N16 5NO doub 19 n y C12 N11 5NO sing 20 n n C12 N04 5NO sing 21 n n C14 N11 5NO sing 22 n n C03 N04 5NO sing 23 n n C03 C01 5NO sing 24 n n N11 C06 5NO sing 25 n n N04 C05 5NO sing 26 n n C06 C05 5NO doub 27 n y C06 C07 5NO sing 28 n y C05 C10 5NO sing 29 n y C07 N08 5NO doub 30 n y C10 C09 5NO doub 31 n y N08 C09 5NO sing 32 n y C10 H1 5NO sing 33 n n C20 H2 5NO sing 34 n n C21 H3 5NO sing 35 n n C24 H4 5NO sing 36 n n C24 H5 5NO sing 37 n n C26 H6 5NO sing 38 n n C26 H7 5NO sing 39 n n C01 H8 5NO sing 40 n n C01 H9 5NO sing 41 n n C02 H10 5NO sing 42 n n C02 H11 5NO sing 43 n n C03 H12 5NO sing 44 n n C07 H13 5NO sing 45 n n C09 H14 5NO sing 46 n n C14 H15 5NO sing 47 n n C14 H16 5NO sing 48 n n C18 H17 5NO sing 49 n n C19 H18 5NO sing 50 n n C25 H19 5NO sing 51 n n C25 H20 5NO sing 52 n n C27 H21 5NO sing 53 n n C27 H22 5NO sing 54 n n O28 H23 5NO sing 55 n n # _atom_sites.entry_id 5EA7 _atom_sites.fract_transf_matrix[1][1] 0.005897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 F 1 601 1 SO4 SO4 . C 2 SO4 F 1 602 2 SO4 SO4 . D 2 SO4 F 1 603 3 SO4 SO4 . E 2 SO4 F 1 604 4 SO4 SO4 . F 2 SO4 F 1 605 5 SO4 SO4 . G 3 NHE F 1 606 1 NHE NHE . H 4 5NO F 1 607 1 5NO LIG . I 5 HOH F 1 701 23 HOH HOH . I 5 HOH F 2 702 8 HOH HOH . I 5 HOH F 3 703 18 HOH HOH . I 5 HOH F 4 704 2 HOH HOH . I 5 HOH F 5 705 13 HOH HOH . I 5 HOH F 6 706 20 HOH HOH . I 5 HOH F 7 707 3 HOH HOH . I 5 HOH F 8 708 4 HOH HOH . I 5 HOH F 9 709 12 HOH HOH . I 5 HOH F 10 710 17 HOH HOH . I 5 HOH F 11 711 6 HOH HOH . I 5 HOH F 12 712 1 HOH HOH . I 5 HOH F 13 713 16 HOH HOH . I 5 HOH F 14 714 7 HOH HOH . I 5 HOH F 15 715 15 HOH HOH . I 5 HOH F 16 716 24 HOH HOH . I 5 HOH F 17 717 14 HOH HOH . I 5 HOH F 18 718 9 HOH HOH . I 5 HOH F 19 719 5 HOH HOH . I 5 HOH F 20 720 21 HOH HOH . I 5 HOH F 21 721 11 HOH HOH . I 5 HOH F 22 722 19 HOH HOH . I 5 HOH F 23 723 10 HOH HOH . I 5 HOH F 24 724 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 5NO . . . H 4 16.606 21.764 21.801 0.33 60.14 ? C10 5NO 607 F 1 HETATM 2 C C15 5NO . . . H 4 21.477 20.618 19.633 0.33 61.62 ? C15 5NO 607 F 1 HETATM 3 C C17 5NO . . . H 4 22.806 22.418 19.584 0.33 60.15 ? C17 5NO 607 F 1 HETATM 4 C C20 5NO . . . H 4 23.707 24.068 17.494 0.33 58.91 ? C20 5NO 607 F 1 HETATM 5 C C21 5NO . . . H 4 22.861 22.98 17.223 0.33 59.46 ? C21 5NO 607 F 1 HETATM 6 C C22 5NO . . . H 4 22.405 22.144 18.289 0.33 60.04 ? C22 5NO 607 F 1 HETATM 7 C C24 5NO . . . H 4 20.951 20.405 17.178 0.33 61.66 ? C24 5NO 607 F 1 HETATM 8 C C26 5NO . . . H 4 18.829 20.215 15.757 0.33 61.91 ? C26 5NO 607 F 1 HETATM 9 C C01 5NO . . . H 4 15.165 17.588 20.527 0.33 61.4 ? C01 5NO 607 F 1 HETATM 10 C C02 5NO . . . H 4 15.034 18.162 19.131 0.33 61.39 ? C02 5NO 607 F 1 HETATM 11 C C03 5NO . . . H 4 15.671 18.992 20.234 0.33 61.67 ? C03 5NO 607 F 1 HETATM 12 N N04 5NO . . . H 4 17.004 19.497 20.449 0.33 61.1 ? N04 5NO 607 F 1 HETATM 13 C C05 5NO . . . H 4 17.349 20.716 21.142 0.33 61.44 ? C05 5NO 607 F 1 HETATM 14 C C06 5NO . . . H 4 18.752 20.845 21.132 0.33 61.13 ? C06 5NO 607 F 1 HETATM 15 C C07 5NO . . . H 4 19.355 21.971 21.755 0.33 60.17 ? C07 5NO 607 F 1 HETATM 16 N N08 5NO . . . H 4 18.615 22.908 22.348 0.33 59.91 ? N08 5NO 607 F 1 HETATM 17 C C09 5NO . . . H 4 17.279 22.84 22.389 0.33 59.71 ? C09 5NO 607 F 1 HETATM 18 N N11 5NO . . . H 4 19.295 19.706 20.428 0.33 61.56 ? N11 5NO 607 F 1 HETATM 19 C C12 5NO . . . H 4 18.211 18.883 20.018 0.33 61.84 ? C12 5NO 607 F 1 HETATM 20 O O13 5NO . . . H 4 18.304 17.836 19.402 0.33 62.32 ? O13 5NO 607 F 1 HETATM 21 C C14 5NO . . . H 4 20.686 19.411 20.177 0.33 60.46 ? C14 5NO 607 F 1 HETATM 22 N N16 5NO . . . H 4 22.217 21.452 20.398 0.33 60.28 ? N16 5NO 607 F 1 HETATM 23 C C18 5NO . . . H 4 23.669 23.527 19.856 0.33 59.42 ? C18 5NO 607 F 1 HETATM 24 C C19 5NO . . . H 4 24.113 24.347 18.81 0.33 58.84 ? C19 5NO 607 F 1 HETATM 25 N N23 5NO . . . H 4 21.576 21.026 18.334 0.33 60.37 ? N23 5NO 607 F 1 HETATM 26 C C25 5NO . . . H 4 19.418 20.552 17.141 0.33 61.57 ? C25 5NO 607 F 1 HETATM 27 C C27 5NO . . . H 4 17.297 20.12 15.77 0.33 61.5 ? C27 5NO 607 F 1 HETATM 28 O O28 5NO . . . H 4 16.834 20.082 14.431 0.33 61.49 ? O28 5NO 607 F 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #