data_5EA8 # _model_server_result.job_id p850wlf9-jI8cRM5crLOIg _model_server_result.datetime_utc '2024-12-01 02:48:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ea8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 5EA8 # _exptl.entry_id 5EA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EA8 _cell.length_a 168.19 _cell.length_b 168.19 _cell.length_c 168.19 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_645 z+1,x-1,y 0 0 1 1 0 0 0 1 0 168.19 -168.19 0 3 'crystal symmetry operation' 9_654 y+1,z,x-1 0 1 0 0 0 1 1 0 0 168.19 0 -168.19 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 F CYS 37 1_555 A SG CYS 439 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 69 F CYS 69 1_555 A SG CYS 212 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 155 F CYS 155 1_555 A SG CYS 290 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 313 F CYS 313 1_555 A SG CYS 343 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 322 F CYS 322 1_555 A SG CYS 333 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 A SG CYS 358 F CYS 358 1_555 A SG CYS 367 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 A SG CYS 382 F CYS 382 1_555 A SG CYS 393 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 A SG CYS 416 F CYS 416 1_555 A SG CYS 422 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 324 n n O11 C1 TAR sing 325 n n O11 HO1 TAR sing 326 n n C1 C2 TAR sing 327 n n C2 O2 TAR sing 328 n n C2 C3 TAR sing 329 n n C2 H2 TAR sing 330 n n O2 HO2 TAR sing 331 n n C3 O3 TAR sing 332 n n C3 C4 TAR sing 333 n n C3 H3 TAR sing 334 n n O3 HO3 TAR sing 335 n n C4 O4 TAR doub 336 n n C4 O41 TAR sing 337 n n O41 HO4 TAR sing 338 n n # _atom_sites.entry_id 5EA8 _atom_sites.fract_transf_matrix[1][1] 0.005946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 F 1 601 1 SO4 SO4 . C 2 SO4 F 1 602 2 SO4 SO4 . D 2 SO4 F 1 603 3 SO4 SO4 . E 2 SO4 F 1 604 4 SO4 SO4 . F 2 SO4 F 1 605 5 SO4 SO4 . G 3 NHE F 1 606 1 NHE NHE . H 4 TAR F 1 607 1 TAR TAR . I 5 HOH F 1 701 31 HOH HOH . I 5 HOH F 2 702 48 HOH HOH . I 5 HOH F 3 703 18 HOH HOH . I 5 HOH F 4 704 21 HOH HOH . I 5 HOH F 5 705 44 HOH HOH . I 5 HOH F 6 706 38 HOH HOH . I 5 HOH F 7 707 6 HOH HOH . I 5 HOH F 8 708 23 HOH HOH . I 5 HOH F 9 709 27 HOH HOH . I 5 HOH F 10 710 65 HOH HOH . I 5 HOH F 11 711 19 HOH HOH . I 5 HOH F 12 712 56 HOH HOH . I 5 HOH F 13 713 43 HOH HOH . I 5 HOH F 14 714 33 HOH HOH . I 5 HOH F 15 715 1 HOH HOH . I 5 HOH F 16 716 39 HOH HOH . I 5 HOH F 17 717 37 HOH HOH . I 5 HOH F 18 718 11 HOH HOH . I 5 HOH F 19 719 42 HOH HOH . I 5 HOH F 20 720 29 HOH HOH . I 5 HOH F 21 721 45 HOH HOH . I 5 HOH F 22 722 3 HOH HOH . I 5 HOH F 23 723 7 HOH HOH . I 5 HOH F 24 724 2 HOH HOH . I 5 HOH F 25 725 9 HOH HOH . I 5 HOH F 26 726 16 HOH HOH . I 5 HOH F 27 727 35 HOH HOH . I 5 HOH F 28 728 60 HOH HOH . I 5 HOH F 29 729 26 HOH HOH . I 5 HOH F 30 730 36 HOH HOH . I 5 HOH F 31 731 58 HOH HOH . I 5 HOH F 32 732 22 HOH HOH . I 5 HOH F 33 733 13 HOH HOH . I 5 HOH F 34 734 8 HOH HOH . I 5 HOH F 35 735 5 HOH HOH . I 5 HOH F 36 736 41 HOH HOH . I 5 HOH F 37 737 64 HOH HOH . I 5 HOH F 38 738 17 HOH HOH . I 5 HOH F 39 739 30 HOH HOH . I 5 HOH F 40 740 15 HOH HOH . I 5 HOH F 41 741 50 HOH HOH . I 5 HOH F 42 742 62 HOH HOH . I 5 HOH F 43 743 10 HOH HOH . I 5 HOH F 44 744 20 HOH HOH . I 5 HOH F 45 745 24 HOH HOH . I 5 HOH F 46 746 4 HOH HOH . I 5 HOH F 47 747 55 HOH HOH . I 5 HOH F 48 748 53 HOH HOH . I 5 HOH F 49 749 28 HOH HOH . I 5 HOH F 50 750 52 HOH HOH . I 5 HOH F 51 751 40 HOH HOH . I 5 HOH F 52 752 47 HOH HOH . I 5 HOH F 53 753 12 HOH HOH . I 5 HOH F 54 754 57 HOH HOH . I 5 HOH F 55 755 54 HOH HOH . I 5 HOH F 56 756 63 HOH HOH . I 5 HOH F 57 757 61 HOH HOH . I 5 HOH F 58 758 34 HOH HOH . I 5 HOH F 59 759 32 HOH HOH . I 5 HOH F 60 760 59 HOH HOH . I 5 HOH F 61 761 46 HOH HOH . I 5 HOH F 62 762 25 HOH HOH . I 5 HOH F 63 763 51 HOH HOH . I 5 HOH F 64 764 14 HOH HOH . I 5 HOH F 65 765 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . H 4 162.904 -26.963 5.247 1 126.05 ? O1 TAR 607 F 1 HETATM 2 O O11 TAR . . . H 4 161.184 -27.837 6.261 1 125.81 ? O11 TAR 607 F 1 HETATM 3 C C1 TAR . . . H 4 162.429 -27.671 6.172 1 126.26 ? C1 TAR 607 F 1 HETATM 4 C C2 TAR . . . H 4 163.362 -28.326 7.166 1 127.09 ? C2 TAR 607 F 1 HETATM 5 O O2 TAR . . . H 4 162.801 -28.296 8.458 1 127.01 ? O2 TAR 607 F 1 HETATM 6 C C3 TAR . . . H 4 163.596 -29.757 6.745 1 127.94 ? C3 TAR 607 F 1 HETATM 7 O O3 TAR . . . H 4 163.164 -30.627 7.764 1 128.13 ? O3 TAR 607 F 1 HETATM 8 C C4 TAR . . . H 4 165.074 -29.948 6.507 1 128.53 ? C4 TAR 607 F 1 HETATM 9 O O4 TAR . . . H 4 165.523 -31.074 6.167 1 128.72 ? O4 TAR 607 F 1 HETATM 10 O O41 TAR . . . H 4 165.856 -28.973 6.654 1 128.81 ? O41 TAR 607 F 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 10 #