data_5EAF # _model_server_result.job_id YlCThYe17ueVcaATDEf7BA _model_server_result.datetime_utc '2025-02-18 15:38:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5EAF # _exptl.entry_id 5EAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 99.96 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EAF _cell.length_a 67.56 _cell.length_b 79.6 _cell.length_c 81.13 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 D N15 FQC . A FQC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc3 B SG CYS 470 B CYS 470 1_555 E FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 E FE HEM . B HEM 601 1_555 F N15 FQC . B FQC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 165 n n CHA C4D HEM doub 166 n n CHA HHA HEM sing 167 n n CHB C4A HEM sing 168 n n CHB C1B HEM doub 169 n n CHB HHB HEM sing 170 n n CHC C4B HEM sing 171 n n CHC C1C HEM doub 172 n n CHC HHC HEM sing 173 n n CHD C4C HEM doub 174 n n CHD C1D HEM sing 175 n n CHD HHD HEM sing 176 n n C1A C2A HEM doub 177 n y C1A NA HEM sing 178 n y C2A C3A HEM sing 179 n y C2A CAA HEM sing 180 n n C3A C4A HEM doub 181 n y C3A CMA HEM sing 182 n n C4A NA HEM sing 183 n y CMA HMA HEM sing 184 n n CMA HMAA HEM sing 185 n n CMA HMAB HEM sing 186 n n CAA CBA HEM sing 187 n n CAA HAA HEM sing 188 n n CAA HAAA HEM sing 189 n n CBA CGA HEM sing 190 n n CBA HBA HEM sing 191 n n CBA HBAA HEM sing 192 n n CGA O1A HEM doub 193 n n CGA O2A HEM sing 194 n n C1B C2B HEM sing 195 n n C1B NB HEM sing 196 n n C2B C3B HEM doub 197 n n C2B CMB HEM sing 198 n n C3B C4B HEM sing 199 n n C3B CAB HEM sing 200 n n C4B NB HEM doub 201 n n CMB HMB HEM sing 202 n n CMB HMBA HEM sing 203 n n CMB HMBB HEM sing 204 n n CAB CBB HEM doub 205 n n CAB HAB HEM sing 206 n n CBB HBB HEM sing 207 n n CBB HBBA HEM sing 208 n n C1C C2C HEM sing 209 n y C1C NC HEM sing 210 n y C2C C3C HEM doub 211 n y C2C CMC HEM sing 212 n n C3C C4C HEM sing 213 n y C3C CAC HEM sing 214 n n C4C NC HEM sing 215 n y CMC HMC HEM sing 216 n n CMC HMCA HEM sing 217 n n CMC HMCB HEM sing 218 n n CAC CBC HEM doub 219 n n CAC HAC HEM sing 220 n n CBC HBC HEM sing 221 n n CBC HBCA HEM sing 222 n n C1D C2D HEM sing 223 n n C1D ND HEM doub 224 n n C2D C3D HEM doub 225 n n C2D CMD HEM sing 226 n n C3D C4D HEM sing 227 n n C3D CAD HEM sing 228 n n C4D ND HEM sing 229 n n CMD HMD HEM sing 230 n n CMD HMDA HEM sing 231 n n CMD HMDB HEM sing 232 n n CAD CBD HEM sing 233 n n CAD HAD HEM sing 234 n n CAD HADA HEM sing 235 n n CBD CGD HEM sing 236 n n CBD HBD HEM sing 237 n n CBD HBDA HEM sing 238 n n CGD O1D HEM doub 239 n n CGD O2D HEM sing 240 n n O2A H2A HEM sing 241 n n O2D H2D HEM sing 242 n n FE NA HEM sing 243 n n FE NB HEM sing 244 n n FE NC HEM sing 245 n n FE ND HEM sing 246 n n # _atom_sites.entry_id 5EAF _atom_sites.fract_transf_matrix[1][1] 0.014802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012563 _atom_sites.fract_transf_matrix[2][3] 0.002206 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 601 HEM HEM . D 3 FQC A 1 602 2 FQC FQC . E 2 HEM B 1 601 601 HEM HEM . F 3 FQC B 1 602 1 FQC FQC . G 4 HOH A 1 701 8 HOH HOH . G 4 HOH A 2 702 18 HOH HOH . G 4 HOH A 3 703 9 HOH HOH . G 4 HOH A 4 704 3 HOH HOH . G 4 HOH A 5 705 10 HOH HOH . G 4 HOH A 6 706 24 HOH HOH . G 4 HOH A 7 707 2 HOH HOH . G 4 HOH A 8 708 36 HOH HOH . G 4 HOH A 9 709 14 HOH HOH . G 4 HOH A 10 710 13 HOH HOH . G 4 HOH A 11 711 16 HOH HOH . G 4 HOH A 12 712 21 HOH HOH . G 4 HOH A 13 713 38 HOH HOH . G 4 HOH A 14 714 43 HOH HOH . G 4 HOH A 15 715 42 HOH HOH . G 4 HOH A 16 716 46 HOH HOH . G 4 HOH A 17 717 23 HOH HOH . G 4 HOH A 18 718 49 HOH HOH . G 4 HOH A 19 719 19 HOH HOH . G 4 HOH A 20 720 51 HOH HOH . H 4 HOH B 1 701 15 HOH HOH . H 4 HOH B 2 702 6 HOH HOH . H 4 HOH B 3 703 11 HOH HOH . H 4 HOH B 4 704 34 HOH HOH . H 4 HOH B 5 705 7 HOH HOH . H 4 HOH B 6 706 31 HOH HOH . H 4 HOH B 7 707 12 HOH HOH . H 4 HOH B 8 708 32 HOH HOH . H 4 HOH B 9 709 48 HOH HOH . H 4 HOH B 10 710 47 HOH HOH . H 4 HOH B 11 711 41 HOH HOH . H 4 HOH B 12 712 45 HOH HOH . H 4 HOH B 13 713 4 HOH HOH . H 4 HOH B 14 714 56 HOH HOH . H 4 HOH B 15 715 57 HOH HOH . H 4 HOH B 16 716 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -41.099 -38.277 -61.543 1 44.66 ? CHA HEM 601 B 1 HETATM 2 C CHB HEM . . . E 2 -44.08 -39.053 -57.786 1 46.48 ? CHB HEM 601 B 1 HETATM 3 C CHC HEM . . . E 2 -47.46 -36.57 -60.22 1 44.19 ? CHC HEM 601 B 1 HETATM 4 C CHD HEM . . . E 2 -44.639 -36.058 -64.029 1 47.53 ? CHD HEM 601 B 1 HETATM 5 C C1A HEM . . . E 2 -41.609 -38.691 -60.342 1 45.4 ? C1A HEM 601 B 1 HETATM 6 C C2A HEM . . . E 2 -40.874 -39.476 -59.39 1 42.39 ? C2A HEM 601 B 1 HETATM 7 C C3A HEM . . . E 2 -41.692 -39.704 -58.346 1 43.04 ? C3A HEM 601 B 1 HETATM 8 C C4A HEM . . . E 2 -42.964 -39.063 -58.607 1 43.65 ? C4A HEM 601 B 1 HETATM 9 C CMA HEM . . . E 2 -41.371 -40.502 -57.074 1 41.43 ? CMA HEM 601 B 1 HETATM 10 C CAA HEM . . . E 2 -39.425 -39.947 -59.608 1 38.25 ? CAA HEM 601 B 1 HETATM 11 C CBA HEM . . . E 2 -39.412 -41.231 -60.44 1 43.01 ? CBA HEM 601 B 1 HETATM 12 C CGA HEM . . . E 2 -38.062 -41.938 -60.445 1 50.18 ? CGA HEM 601 B 1 HETATM 13 O O1A HEM . . . E 2 -37.959 -43.096 -60.957 1 49.15 ? O1A HEM 601 B 1 HETATM 14 O O2A HEM . . . E 2 -37.066 -41.368 -59.929 1 49.14 ? O2A HEM 601 B 1 HETATM 15 C C1B HEM . . . E 2 -45.256 -38.41 -58.121 1 44.87 ? C1B HEM 601 B 1 HETATM 16 C C2B HEM . . . E 2 -46.433 -38.263 -57.284 1 45.08 ? C2B HEM 601 B 1 HETATM 17 C C3B HEM . . . E 2 -47.346 -37.573 -57.997 1 44.88 ? C3B HEM 601 B 1 HETATM 18 C C4B HEM . . . E 2 -46.766 -37.265 -59.269 1 41.74 ? C4B HEM 601 B 1 HETATM 19 C CMB HEM . . . E 2 -46.563 -38.819 -55.848 1 45.41 ? CMB HEM 601 B 1 HETATM 20 C CAB HEM . . . E 2 -48.788 -37.096 -57.675 1 43.24 ? CAB HEM 601 B 1 HETATM 21 C CBB HEM . . . E 2 -49.366 -37.275 -56.479 1 48.34 ? CBB HEM 601 B 1 HETATM 22 C C1C HEM . . . E 2 -46.995 -36.164 -61.432 1 42.49 ? C1C HEM 601 B 1 HETATM 23 C C2C HEM . . . E 2 -47.68 -35.265 -62.336 1 43.65 ? C2C HEM 601 B 1 HETATM 24 C C3C HEM . . . E 2 -46.875 -35.12 -63.409 1 45.77 ? C3C HEM 601 B 1 HETATM 25 C C4C HEM . . . E 2 -45.7 -35.934 -63.188 1 44.74 ? C4C HEM 601 B 1 HETATM 26 C CMC HEM . . . E 2 -49.064 -34.626 -62.037 1 38.58 ? CMC HEM 601 B 1 HETATM 27 C CAC HEM . . . E 2 -47.07 -34.279 -64.69 1 43.19 ? CAC HEM 601 B 1 HETATM 28 C CBC HEM . . . E 2 -48.161 -33.549 -64.924 1 41.33 ? CBC HEM 601 B 1 HETATM 29 C C1D HEM . . . E 2 -43.399 -36.539 -63.673 1 46.87 ? C1D HEM 601 B 1 HETATM 30 C C2D HEM . . . E 2 -42.217 -36.371 -64.488 1 45.37 ? C2D HEM 601 B 1 HETATM 31 C C3D HEM . . . E 2 -41.1 -37.072 -63.729 1 43.92 ? C3D HEM 601 B 1 HETATM 32 C C4D HEM . . . E 2 -41.736 -37.583 -62.528 1 40.68 ? C4D HEM 601 B 1 HETATM 33 C CMD HEM . . . E 2 -42.109 -35.641 -65.836 1 41.38 ? CMD HEM 601 B 1 HETATM 34 C CAD HEM . . . E 2 -39.629 -37.147 -64.196 1 42.49 ? CAD HEM 601 B 1 HETATM 35 C CBD HEM . . . E 2 -39.131 -38.58 -64.339 1 44.03 ? CBD HEM 601 B 1 HETATM 36 C CGD HEM . . . E 2 -37.723 -38.551 -64.894 1 41.9 ? CGD HEM 601 B 1 HETATM 37 O O1D HEM . . . E 2 -37.149 -37.455 -65.153 1 38.36 ? O1D HEM 601 B 1 HETATM 38 O O2D HEM . . . E 2 -37.155 -39.648 -65.069 1 42.37 ? O2D HEM 601 B 1 HETATM 39 N NA HEM . . . E 2 -42.877 -38.451 -59.844 1 43.6 ? NA HEM 601 B 1 HETATM 40 N NB HEM . . . E 2 -45.498 -37.785 -59.338 1 41.65 ? NB HEM 601 B 1 HETATM 41 N NC HEM . . . E 2 -45.794 -36.561 -61.973 1 45.34 ? NC HEM 601 B 1 HETATM 42 N ND HEM . . . E 2 -43.077 -37.251 -62.526 1 40.54 ? ND HEM 601 B 1 HETATM 43 FE FE HEM . . . E 2 -44.282 -37.44 -60.927 1 41.74 ? FE HEM 601 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #