data_5EAH # _model_server_result.job_id xVw4WzORi2G3NnGSG6RHUQ _model_server_result.datetime_utc '2024-11-30 06:07:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5EAH # _exptl.entry_id 5EAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.58 _cell.angle_gamma 90 _cell.entry_id 5EAH _cell.length_a 78.02 _cell.length_b 67.33 _cell.length_c 80.9 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N31 5LZ . A 5LZ 602 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.151 ? metalc ? metalc3 B FE HEM . A HEM 601 1_555 D N31 5LW . A 5LW 603 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.996 ? metalc ? metalc4 B FE HEM . A HEM 601 1_555 E N31 5LX . A 5LX 604 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.014 ? metalc ? metalc5 B FE HEM . A HEM 601 1_555 F N31 5LY . A 5LY 605 1_555 ? ? ? ? D ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 317 n n CHA C4D HEM doub 318 n n CHA HHA HEM sing 319 n n CHB C4A HEM sing 320 n n CHB C1B HEM doub 321 n n CHB HHB HEM sing 322 n n CHC C4B HEM sing 323 n n CHC C1C HEM doub 324 n n CHC HHC HEM sing 325 n n CHD C4C HEM doub 326 n n CHD C1D HEM sing 327 n n CHD HHD HEM sing 328 n n C1A C2A HEM doub 329 n y C1A NA HEM sing 330 n y C2A C3A HEM sing 331 n y C2A CAA HEM sing 332 n n C3A C4A HEM doub 333 n y C3A CMA HEM sing 334 n n C4A NA HEM sing 335 n y CMA HMA HEM sing 336 n n CMA HMAA HEM sing 337 n n CMA HMAB HEM sing 338 n n CAA CBA HEM sing 339 n n CAA HAA HEM sing 340 n n CAA HAAA HEM sing 341 n n CBA CGA HEM sing 342 n n CBA HBA HEM sing 343 n n CBA HBAA HEM sing 344 n n CGA O1A HEM doub 345 n n CGA O2A HEM sing 346 n n C1B C2B HEM sing 347 n n C1B NB HEM sing 348 n n C2B C3B HEM doub 349 n n C2B CMB HEM sing 350 n n C3B C4B HEM sing 351 n n C3B CAB HEM sing 352 n n C4B NB HEM doub 353 n n CMB HMB HEM sing 354 n n CMB HMBA HEM sing 355 n n CMB HMBB HEM sing 356 n n CAB CBB HEM doub 357 n n CAB HAB HEM sing 358 n n CBB HBB HEM sing 359 n n CBB HBBA HEM sing 360 n n C1C C2C HEM sing 361 n y C1C NC HEM sing 362 n y C2C C3C HEM doub 363 n y C2C CMC HEM sing 364 n n C3C C4C HEM sing 365 n y C3C CAC HEM sing 366 n n C4C NC HEM sing 367 n y CMC HMC HEM sing 368 n n CMC HMCA HEM sing 369 n n CMC HMCB HEM sing 370 n n CAC CBC HEM doub 371 n n CAC HAC HEM sing 372 n n CBC HBC HEM sing 373 n n CBC HBCA HEM sing 374 n n C1D C2D HEM sing 375 n n C1D ND HEM doub 376 n n C2D C3D HEM doub 377 n n C2D CMD HEM sing 378 n n C3D C4D HEM sing 379 n n C3D CAD HEM sing 380 n n C4D ND HEM sing 381 n n CMD HMD HEM sing 382 n n CMD HMDA HEM sing 383 n n CMD HMDB HEM sing 384 n n CAD CBD HEM sing 385 n n CAD HAD HEM sing 386 n n CAD HADA HEM sing 387 n n CBD CGD HEM sing 388 n n CBD HBD HEM sing 389 n n CBD HBDA HEM sing 390 n n CGD O1D HEM doub 391 n n CGD O2D HEM sing 392 n n O2A H2A HEM sing 393 n n O2D H2D HEM sing 394 n n FE NA HEM sing 395 n n FE NB HEM sing 396 n n FE NC HEM sing 397 n n FE ND HEM sing 398 n n # _atom_sites.entry_id 5EAH _atom_sites.fract_transf_matrix[1][1] 0.012817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001934 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 5LZ A 1 602 1 5LZ DFC . D 4 5LW A 1 603 1 5LW DF4 . E 5 5LX A 1 604 1 5LX DF5 . F 6 5LY A 1 605 1 5LY DF6 . G 7 HOH A 1 701 5 HOH HOH . G 7 HOH A 2 702 8 HOH HOH . G 7 HOH A 3 703 11 HOH HOH . G 7 HOH A 4 704 40 HOH HOH . G 7 HOH A 5 705 19 HOH HOH . G 7 HOH A 6 706 37 HOH HOH . G 7 HOH A 7 707 24 HOH HOH . G 7 HOH A 8 708 25 HOH HOH . G 7 HOH A 9 709 6 HOH HOH . G 7 HOH A 10 710 1 HOH HOH . G 7 HOH A 11 711 28 HOH HOH . G 7 HOH A 12 712 27 HOH HOH . G 7 HOH A 13 713 20 HOH HOH . G 7 HOH A 14 714 15 HOH HOH . G 7 HOH A 15 715 3 HOH HOH . G 7 HOH A 16 716 9 HOH HOH . G 7 HOH A 17 717 2 HOH HOH . G 7 HOH A 18 718 38 HOH HOH . G 7 HOH A 19 719 10 HOH HOH . G 7 HOH A 20 720 12 HOH HOH . G 7 HOH A 21 721 4 HOH HOH . G 7 HOH A 22 722 32 HOH HOH . G 7 HOH A 23 723 7 HOH HOH . G 7 HOH A 24 724 17 HOH HOH . G 7 HOH A 25 725 13 HOH HOH . G 7 HOH A 26 726 31 HOH HOH . G 7 HOH A 27 727 21 HOH HOH . G 7 HOH A 28 728 34 HOH HOH . G 7 HOH A 29 729 16 HOH HOH . G 7 HOH A 30 730 22 HOH HOH . G 7 HOH A 31 731 29 HOH HOH . G 7 HOH A 32 732 42 HOH HOH . G 7 HOH A 33 733 30 HOH HOH . G 7 HOH A 34 734 44 HOH HOH . G 7 HOH A 35 735 23 HOH HOH . G 7 HOH A 36 736 41 HOH HOH . G 7 HOH A 37 737 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 27.17 9.17 18.632 1 46.5 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 26.401 12.14 22.417 1 34.94 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 29.038 15.575 20.193 1 40.11 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 29.632 12.688 16.382 1 33.6 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 26.75 9.669 19.832 1 52.14 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 25.96 8.929 20.791 1 39.96 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 25.743 9.747 21.833 1 34.47 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 26.393 11.028 21.584 1 36.53 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 24.935 9.391 23.096 1 38.51 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 25.48 7.473 20.61 1 30.54 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 24.13 7.36 19.902 1 43.6 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 23.564 5.958 20.036 1 44.35 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 22.357 5.735 19.725 1 49.52 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 24.323 5.045 20.471 1 47.74 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 27.093 13.313 22.173 1 40.5 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 27.313 14.422 23.081 1 43.43 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 28.041 15.355 22.431 1 45.27 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 28.304 14.865 21.113 1 32.98 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 26.786 14.486 24.542 1 47.69 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 28.593 16.751 22.853 1 46.81 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 28.325 17.337 24.014 1 64.77 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 29.433 15.131 18.968 1 45.92 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 30.211 15.888 18.009 1 41.86 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 30.361 15.085 16.938 1 45.23 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 29.714 13.798 17.208 1 44.51 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 30.705 17.356 18.233 1 30.45 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 31.136 15.408 15.647 1 44.78 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 32.199 16.217 15.659 1 39.83 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 29.056 11.46 16.666 1 37.16 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 29.108 10.265 15.842 1 44.72 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 28.429 9.284 16.45 1 45.96 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 27.917 9.832 17.697 1 40.32 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 29.817 10.125 14.481 1 32.8 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 28.271 7.831 15.911 1 36.84 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 26.842 7.283 15.953 1 42.36 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 26.871 5.881 15.407 1 42.13 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 27.988 5.307 15.366 1 43.22 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 25.802 5.327 15.036 1 39.76 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 27.005 10.937 20.34 1 43.23 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 27.708 13.632 20.973 1 40.54 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 29.146 13.878 18.462 1 38.64 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 28.31 11.144 17.79 1 34.8 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 28.118 12.383 19.41 1 41.91 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 445 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #