data_5EAI # _model_server_result.job_id SOWjX_ZHydZDQ9aWSGCwNg _model_server_result.datetime_utc '2024-11-21 16:18:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":301}' # _entry.id 5EAI # _exptl.entry_id 5EAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EAI _cell.length_a 95.6 _cell.length_b 210.77 _cell.length_c 228.08 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 PISA dimeric 2 author_and_software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,O,P,Q,HA,IA 1 1 C,D,R,S,JA,KA 2 1 E,F,T,U,V,LA,MA 3 1 G,H,W,X,Y,NA,OA 4 1 I,J,Z,AA,PA,QA 5 1 K,L,BA,CA,DA,RA,SA 6 1 M,N,EA,FA,GA,TA,UA 7 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 O N N ? 2 P N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 DA N N ? 2 EA N N ? 2 GA N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 125 n n PA O2A FAD sing 126 n n PA O5B FAD sing 127 n n PA O3P FAD sing 128 n n O2A HOA2 FAD sing 129 n n O5B C5B FAD sing 130 n n C5B C4B FAD sing 131 n n C5B H51A FAD sing 132 n n C5B H52A FAD sing 133 n n C4B O4B FAD sing 134 n n C4B C3B FAD sing 135 n n C4B H4B FAD sing 136 n n O4B C1B FAD sing 137 n n C3B O3B FAD sing 138 n n C3B C2B FAD sing 139 n n C3B H3B FAD sing 140 n n O3B HO3A FAD sing 141 n n C2B O2B FAD sing 142 n n C2B C1B FAD sing 143 n n C2B H2B FAD sing 144 n n O2B HO2A FAD sing 145 n n C1B N9A FAD sing 146 n n C1B H1B FAD sing 147 n n N9A C8A FAD sing 148 n y N9A C4A FAD sing 149 n y C8A N7A FAD doub 150 n y C8A H8A FAD sing 151 n n N7A C5A FAD sing 152 n y C5A C6A FAD sing 153 n y C5A C4A FAD doub 154 n y C6A N6A FAD sing 155 n n C6A N1A FAD doub 156 n y N6A H61A FAD sing 157 n n N6A H62A FAD sing 158 n n N1A C2A FAD sing 159 n y C2A N3A FAD doub 160 n y C2A H2A FAD sing 161 n n N3A C4A FAD sing 162 n y N1 C2 FAD sing 163 n n N1 C10 FAD doub 164 n n C2 O2 FAD doub 165 n n C2 N3 FAD sing 166 n n N3 C4 FAD sing 167 n n N3 HN3 FAD sing 168 n n C4 O4 FAD doub 169 n n C4 C4X FAD sing 170 n n C4X N5 FAD doub 171 n n C4X C10 FAD sing 172 n n N5 C5X FAD sing 173 n n C5X C6 FAD doub 174 n y C5X C9A FAD sing 175 n y C6 C7 FAD sing 176 n y C6 H6 FAD sing 177 n n C7 C7M FAD sing 178 n n C7 C8 FAD doub 179 n y C7M HM71 FAD sing 180 n n C7M HM72 FAD sing 181 n n C7M HM73 FAD sing 182 n n C8 C8M FAD sing 183 n n C8 C9 FAD sing 184 n y C8M HM81 FAD sing 185 n n C8M HM82 FAD sing 186 n n C8M HM83 FAD sing 187 n n C9 C9A FAD doub 188 n y C9 H9 FAD sing 189 n n C9A N10 FAD sing 190 n n N10 C10 FAD sing 191 n n N10 C1' FAD sing 192 n n C1' C2' FAD sing 193 n n C1' "H1'1" FAD sing 194 n n C1' "H1'2" FAD sing 195 n n C2' O2' FAD sing 196 n n C2' C3' FAD sing 197 n n C2' H2' FAD sing 198 n n O2' HO2' FAD sing 199 n n C3' O3' FAD sing 200 n n C3' C4' FAD sing 201 n n C3' H3' FAD sing 202 n n O3' HO3' FAD sing 203 n n C4' O4' FAD sing 204 n n C4' C5' FAD sing 205 n n C4' H4' FAD sing 206 n n O4' HO4' FAD sing 207 n n C5' O5' FAD sing 208 n n C5' "H5'1" FAD sing 209 n n C5' "H5'2" FAD sing 210 n n O5' P FAD sing 211 n n P O1P FAD doub 212 n n P O2P FAD sing 213 n n P O3P FAD sing 214 n n O2P HOP2 FAD sing 215 n n # _atom_sites.entry_id 5EAI _atom_sites.fract_transf_matrix[1][1] 0.01046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 FAD A 1 601 601 FAD FAD . P 2 FAD B 1 301 603 FAD FAD . Q 3 E6A B 1 302 5 E6A E6A . R 2 FAD C 1 601 601 FAD FAD . S 2 FAD D 1 301 603 FAD FAD . T 2 FAD E 1 601 601 FAD FAD . U 3 E6A E 1 602 1 E6A E6A . V 2 FAD F 1 301 603 FAD FAD . W 2 FAD G 1 601 601 FAD FAD . X 2 FAD H 1 301 603 FAD FAD . Y 3 E6A H 1 302 2 E6A E6A . Z 2 FAD I 1 601 601 FAD FAD . AA 2 FAD J 1 301 603 FAD FAD . BA 2 FAD K 1 601 601 FAD FAD . CA 3 E6A K 1 602 3 E6A E6A . DA 2 FAD L 1 301 603 FAD FAD . EA 2 FAD M 1 601 601 FAD FAD . FA 3 E6A M 1 602 4 E6A E6A . GA 2 FAD N 1 301 603 FAD FAD . HA 4 HOH A 1 701 637 HOH HOH . HA 4 HOH A 2 702 618 HOH HOH . HA 4 HOH A 3 703 615 HOH HOH . HA 4 HOH A 4 704 629 HOH HOH . IA 4 HOH B 1 401 595 HOH HOH . IA 4 HOH B 2 402 631 HOH HOH . IA 4 HOH B 3 403 4 HOH HOH . IA 4 HOH B 4 404 609 HOH HOH . JA 4 HOH C 1 701 3 HOH HOH . KA 4 HOH D 1 401 628 HOH HOH . KA 4 HOH D 2 402 1 HOH HOH . KA 4 HOH D 3 403 613 HOH HOH . KA 4 HOH D 4 404 598 HOH HOH . LA 4 HOH E 1 701 623 HOH HOH . LA 4 HOH E 2 702 2 HOH HOH . LA 4 HOH E 3 703 599 HOH HOH . LA 4 HOH E 4 704 419 HOH HOH . LA 4 HOH E 5 705 606 HOH HOH . LA 4 HOH E 6 706 636 HOH HOH . MA 4 HOH F 1 401 602 HOH HOH . MA 4 HOH F 2 402 634 HOH HOH . NA 4 HOH G 1 701 608 HOH HOH . OA 4 HOH H 1 401 638 HOH HOH . OA 4 HOH H 2 402 632 HOH HOH . OA 4 HOH H 3 403 605 HOH HOH . PA 4 HOH I 1 701 627 HOH HOH . PA 4 HOH I 2 702 625 HOH HOH . PA 4 HOH I 3 703 6 HOH HOH . PA 4 HOH I 4 704 600 HOH HOH . PA 4 HOH I 5 705 594 HOH HOH . PA 4 HOH I 6 706 121 HOH HOH . PA 4 HOH I 7 707 596 HOH HOH . PA 4 HOH I 8 708 601 HOH HOH . QA 4 HOH J 1 401 626 HOH HOH . QA 4 HOH J 2 402 610 HOH HOH . QA 4 HOH J 3 403 639 HOH HOH . QA 4 HOH J 4 404 645 HOH HOH . RA 4 HOH K 1 701 624 HOH HOH . RA 4 HOH K 2 702 607 HOH HOH . RA 4 HOH K 3 703 603 HOH HOH . SA 4 HOH L 1 401 633 HOH HOH . SA 4 HOH L 2 402 616 HOH HOH . SA 4 HOH L 3 403 641 HOH HOH . SA 4 HOH L 4 404 640 HOH HOH . TA 4 HOH M 1 701 620 HOH HOH . TA 4 HOH M 2 702 619 HOH HOH . TA 4 HOH M 3 703 622 HOH HOH . UA 4 HOH N 1 401 611 HOH HOH . UA 4 HOH N 2 402 630 HOH HOH . UA 4 HOH N 3 403 614 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . DA 2 -64.859 -46.957 -22.07 1 79.87 ? PA FAD 301 L 1 HETATM 2 O O1A FAD . . . DA 2 -65.38 -46.685 -23.437 1 78.93 ? O1A FAD 301 L 1 HETATM 3 O O2A FAD . . . DA 2 -64.461 -48.414 -21.931 1 82.31 ? O2A FAD 301 L 1 HETATM 4 O O5B FAD . . . DA 2 -63.555 -46.089 -21.694 1 84.81 ? O5B FAD 301 L 1 HETATM 5 C C5B FAD . . . DA 2 -63.226 -45.858 -20.31 1 85.5 ? C5B FAD 301 L 1 HETATM 6 C C4B FAD . . . DA 2 -61.743 -46.01 -20.076 1 88.38 ? C4B FAD 301 L 1 HETATM 7 O O4B FAD . . . DA 2 -61.521 -46.431 -18.712 1 87.98 ? O4B FAD 301 L 1 HETATM 8 C C3B FAD . . . DA 2 -61.009 -47.026 -20.949 1 94.82 ? C3B FAD 301 L 1 HETATM 9 O O3B FAD . . . DA 2 -59.681 -46.593 -21.233 1 99.99 ? O3B FAD 301 L 1 HETATM 10 C C2B FAD . . . DA 2 -61.037 -48.283 -20.081 1 96.02 ? C2B FAD 301 L 1 HETATM 11 O O2B FAD . . . DA 2 -60.035 -49.232 -20.43 1 101.04 ? O2B FAD 301 L 1 HETATM 12 C C1B FAD . . . DA 2 -60.829 -47.666 -18.699 1 92.37 ? C1B FAD 301 L 1 HETATM 13 N N9A FAD . . . DA 2 -61.323 -48.464 -17.58 1 92.44 ? N9A FAD 301 L 1 HETATM 14 C C8A FAD . . . DA 2 -62.167 -49.546 -17.617 1 90.67 ? C8A FAD 301 L 1 HETATM 15 N N7A FAD . . . DA 2 -62.316 -50.15 -16.462 1 88.67 ? N7A FAD 301 L 1 HETATM 16 C C5A FAD . . . DA 2 -61.526 -49.406 -15.6 1 90.49 ? C5A FAD 301 L 1 HETATM 17 C C6A FAD . . . DA 2 -61.233 -49.541 -14.23 1 91.46 ? C6A FAD 301 L 1 HETATM 18 N N6A FAD . . . DA 2 -61.613 -50.59 -13.498 1 91.42 ? N6A FAD 301 L 1 HETATM 19 N N1A FAD . . . DA 2 -60.446 -48.595 -13.66 1 93.41 ? N1A FAD 301 L 1 HETATM 20 C C2A FAD . . . DA 2 -59.964 -47.606 -14.426 1 94.13 ? C2A FAD 301 L 1 HETATM 21 N N3A FAD . . . DA 2 -60.137 -47.4 -15.737 1 93.24 ? N3A FAD 301 L 1 HETATM 22 C C4A FAD . . . DA 2 -60.93 -48.345 -16.27 1 92.38 ? C4A FAD 301 L 1 HETATM 23 N N1 FAD . . . DA 2 -71.568 -39.077 -25.343 1 64.28 ? N1 FAD 301 L 1 HETATM 24 C C2 FAD . . . DA 2 -72.087 -37.835 -25.025 1 65.7 ? C2 FAD 301 L 1 HETATM 25 O O2 FAD . . . DA 2 -71.42 -36.982 -24.419 1 60.96 ? O2 FAD 301 L 1 HETATM 26 N N3 FAD . . . DA 2 -73.399 -37.502 -25.44 1 69.26 ? N3 FAD 301 L 1 HETATM 27 C C4 FAD . . . DA 2 -74.252 -38.316 -26.172 1 68.13 ? C4 FAD 301 L 1 HETATM 28 O O4 FAD . . . DA 2 -75.401 -37.948 -26.411 1 69.22 ? O4 FAD 301 L 1 HETATM 29 C C4X FAD . . . DA 2 -73.679 -39.608 -26.543 1 64.18 ? C4X FAD 301 L 1 HETATM 30 N N5 FAD . . . DA 2 -74.408 -40.425 -27.268 1 60 ? N5 FAD 301 L 1 HETATM 31 C C5X FAD . . . DA 2 -73.874 -41.666 -27.592 1 61.26 ? C5X FAD 301 L 1 HETATM 32 C C6 FAD . . . DA 2 -74.657 -42.563 -28.33 1 61.22 ? C6 FAD 301 L 1 HETATM 33 C C7 FAD . . . DA 2 -74.222 -43.863 -28.591 1 62.65 ? C7 FAD 301 L 1 HETATM 34 C C7M FAD . . . DA 2 -75.123 -44.801 -29.359 1 62.08 ? C7M FAD 301 L 1 HETATM 35 C C8 FAD . . . DA 2 -72.949 -44.276 -28.119 1 63.52 ? C8 FAD 301 L 1 HETATM 36 C C8M FAD . . . DA 2 -72.478 -45.702 -28.249 1 66.19 ? C8M FAD 301 L 1 HETATM 37 C C9 FAD . . . DA 2 -72.15 -43.366 -27.433 1 63.5 ? C9 FAD 301 L 1 HETATM 38 C C9A FAD . . . DA 2 -72.595 -42.07 -27.153 1 64.55 ? C9A FAD 301 L 1 HETATM 39 N N10 FAD . . . DA 2 -71.824 -41.144 -26.38 1 65.83 ? N10 FAD 301 L 1 HETATM 40 C C10 FAD . . . DA 2 -72.321 -39.908 -26.067 1 65.07 ? C10 FAD 301 L 1 HETATM 41 C C1' FAD . . . DA 2 -70.52 -41.539 -25.815 1 64.07 ? C1' FAD 301 L 1 HETATM 42 C C2' FAD . . . DA 2 -70.638 -42.373 -24.544 1 61.44 ? C2' FAD 301 L 1 HETATM 43 O O2' FAD . . . DA 2 -71.366 -41.655 -23.547 1 59.55 ? O2' FAD 301 L 1 HETATM 44 C C3' FAD . . . DA 2 -69.257 -42.756 -24.01 1 60.89 ? C3' FAD 301 L 1 HETATM 45 O O3' FAD . . . DA 2 -68.504 -43.354 -25.066 1 60.84 ? O3' FAD 301 L 1 HETATM 46 C C4' FAD . . . DA 2 -69.222 -43.645 -22.767 1 58.7 ? C4' FAD 301 L 1 HETATM 47 O O4' FAD . . . DA 2 -69.79 -42.949 -21.658 1 50.23 ? O4' FAD 301 L 1 HETATM 48 C C5' FAD . . . DA 2 -67.836 -44.139 -22.427 1 66.19 ? C5' FAD 301 L 1 HETATM 49 O O5' FAD . . . DA 2 -67.913 -44.822 -21.164 1 71.67 ? O5' FAD 301 L 1 HETATM 50 P P FAD . . . DA 2 -67.574 -46.427 -21.164 1 73.93 ? P FAD 301 L 1 HETATM 51 O O1P FAD . . . DA 2 -68.229 -47.107 -20.023 1 72.83 ? O1P FAD 301 L 1 HETATM 52 O O2P FAD . . . DA 2 -68.028 -47.006 -22.516 1 74.54 ? O2P FAD 301 L 1 HETATM 53 O O3P FAD . . . DA 2 -66.005 -46.642 -21.015 1 75.01 ? O3P FAD 301 L 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #