data_5EAI # _model_server_result.job_id adjNr_D7vvKZyRnM1YjL6A _model_server_result.datetime_utc '2024-10-14 02:46:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":301}' # _entry.id 5EAI # _exptl.entry_id 5EAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EAI _cell.length_a 95.6 _cell.length_b 210.77 _cell.length_c 228.08 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 PISA dimeric 2 author_and_software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,O,P,Q,HA,IA 1 1 C,D,R,S,JA,KA 2 1 E,F,T,U,V,LA,MA 3 1 G,H,W,X,Y,NA,OA 4 1 I,J,Z,AA,PA,QA 5 1 K,L,BA,CA,DA,RA,SA 6 1 M,N,EA,FA,GA,TA,UA 7 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 O N N ? 2 P N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 DA N N ? 2 EA N N ? 2 GA N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 125 n n PA O2A FAD sing 126 n n PA O5B FAD sing 127 n n PA O3P FAD sing 128 n n O2A HOA2 FAD sing 129 n n O5B C5B FAD sing 130 n n C5B C4B FAD sing 131 n n C5B H51A FAD sing 132 n n C5B H52A FAD sing 133 n n C4B O4B FAD sing 134 n n C4B C3B FAD sing 135 n n C4B H4B FAD sing 136 n n O4B C1B FAD sing 137 n n C3B O3B FAD sing 138 n n C3B C2B FAD sing 139 n n C3B H3B FAD sing 140 n n O3B HO3A FAD sing 141 n n C2B O2B FAD sing 142 n n C2B C1B FAD sing 143 n n C2B H2B FAD sing 144 n n O2B HO2A FAD sing 145 n n C1B N9A FAD sing 146 n n C1B H1B FAD sing 147 n n N9A C8A FAD sing 148 n y N9A C4A FAD sing 149 n y C8A N7A FAD doub 150 n y C8A H8A FAD sing 151 n n N7A C5A FAD sing 152 n y C5A C6A FAD sing 153 n y C5A C4A FAD doub 154 n y C6A N6A FAD sing 155 n n C6A N1A FAD doub 156 n y N6A H61A FAD sing 157 n n N6A H62A FAD sing 158 n n N1A C2A FAD sing 159 n y C2A N3A FAD doub 160 n y C2A H2A FAD sing 161 n n N3A C4A FAD sing 162 n y N1 C2 FAD sing 163 n n N1 C10 FAD doub 164 n n C2 O2 FAD doub 165 n n C2 N3 FAD sing 166 n n N3 C4 FAD sing 167 n n N3 HN3 FAD sing 168 n n C4 O4 FAD doub 169 n n C4 C4X FAD sing 170 n n C4X N5 FAD doub 171 n n C4X C10 FAD sing 172 n n N5 C5X FAD sing 173 n n C5X C6 FAD doub 174 n y C5X C9A FAD sing 175 n y C6 C7 FAD sing 176 n y C6 H6 FAD sing 177 n n C7 C7M FAD sing 178 n n C7 C8 FAD doub 179 n y C7M HM71 FAD sing 180 n n C7M HM72 FAD sing 181 n n C7M HM73 FAD sing 182 n n C8 C8M FAD sing 183 n n C8 C9 FAD sing 184 n y C8M HM81 FAD sing 185 n n C8M HM82 FAD sing 186 n n C8M HM83 FAD sing 187 n n C9 C9A FAD doub 188 n y C9 H9 FAD sing 189 n n C9A N10 FAD sing 190 n n N10 C10 FAD sing 191 n n N10 C1' FAD sing 192 n n C1' C2' FAD sing 193 n n C1' "H1'1" FAD sing 194 n n C1' "H1'2" FAD sing 195 n n C2' O2' FAD sing 196 n n C2' C3' FAD sing 197 n n C2' H2' FAD sing 198 n n O2' HO2' FAD sing 199 n n C3' O3' FAD sing 200 n n C3' C4' FAD sing 201 n n C3' H3' FAD sing 202 n n O3' HO3' FAD sing 203 n n C4' O4' FAD sing 204 n n C4' C5' FAD sing 205 n n C4' H4' FAD sing 206 n n O4' HO4' FAD sing 207 n n C5' O5' FAD sing 208 n n C5' "H5'1" FAD sing 209 n n C5' "H5'2" FAD sing 210 n n O5' P FAD sing 211 n n P O1P FAD doub 212 n n P O2P FAD sing 213 n n P O3P FAD sing 214 n n O2P HOP2 FAD sing 215 n n # _atom_sites.entry_id 5EAI _atom_sites.fract_transf_matrix[1][1] 0.01046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 FAD A 1 601 601 FAD FAD . P 2 FAD B 1 301 603 FAD FAD . Q 3 E6A B 1 302 5 E6A E6A . R 2 FAD C 1 601 601 FAD FAD . S 2 FAD D 1 301 603 FAD FAD . T 2 FAD E 1 601 601 FAD FAD . U 3 E6A E 1 602 1 E6A E6A . V 2 FAD F 1 301 603 FAD FAD . W 2 FAD G 1 601 601 FAD FAD . X 2 FAD H 1 301 603 FAD FAD . Y 3 E6A H 1 302 2 E6A E6A . Z 2 FAD I 1 601 601 FAD FAD . AA 2 FAD J 1 301 603 FAD FAD . BA 2 FAD K 1 601 601 FAD FAD . CA 3 E6A K 1 602 3 E6A E6A . DA 2 FAD L 1 301 603 FAD FAD . EA 2 FAD M 1 601 601 FAD FAD . FA 3 E6A M 1 602 4 E6A E6A . GA 2 FAD N 1 301 603 FAD FAD . HA 4 HOH A 1 701 637 HOH HOH . HA 4 HOH A 2 702 618 HOH HOH . HA 4 HOH A 3 703 615 HOH HOH . HA 4 HOH A 4 704 629 HOH HOH . IA 4 HOH B 1 401 595 HOH HOH . IA 4 HOH B 2 402 631 HOH HOH . IA 4 HOH B 3 403 4 HOH HOH . IA 4 HOH B 4 404 609 HOH HOH . JA 4 HOH C 1 701 3 HOH HOH . KA 4 HOH D 1 401 628 HOH HOH . KA 4 HOH D 2 402 1 HOH HOH . KA 4 HOH D 3 403 613 HOH HOH . KA 4 HOH D 4 404 598 HOH HOH . LA 4 HOH E 1 701 623 HOH HOH . LA 4 HOH E 2 702 2 HOH HOH . LA 4 HOH E 3 703 599 HOH HOH . LA 4 HOH E 4 704 419 HOH HOH . LA 4 HOH E 5 705 606 HOH HOH . LA 4 HOH E 6 706 636 HOH HOH . MA 4 HOH F 1 401 602 HOH HOH . MA 4 HOH F 2 402 634 HOH HOH . NA 4 HOH G 1 701 608 HOH HOH . OA 4 HOH H 1 401 638 HOH HOH . OA 4 HOH H 2 402 632 HOH HOH . OA 4 HOH H 3 403 605 HOH HOH . PA 4 HOH I 1 701 627 HOH HOH . PA 4 HOH I 2 702 625 HOH HOH . PA 4 HOH I 3 703 6 HOH HOH . PA 4 HOH I 4 704 600 HOH HOH . PA 4 HOH I 5 705 594 HOH HOH . PA 4 HOH I 6 706 121 HOH HOH . PA 4 HOH I 7 707 596 HOH HOH . PA 4 HOH I 8 708 601 HOH HOH . QA 4 HOH J 1 401 626 HOH HOH . QA 4 HOH J 2 402 610 HOH HOH . QA 4 HOH J 3 403 639 HOH HOH . QA 4 HOH J 4 404 645 HOH HOH . RA 4 HOH K 1 701 624 HOH HOH . RA 4 HOH K 2 702 607 HOH HOH . RA 4 HOH K 3 703 603 HOH HOH . SA 4 HOH L 1 401 633 HOH HOH . SA 4 HOH L 2 402 616 HOH HOH . SA 4 HOH L 3 403 641 HOH HOH . SA 4 HOH L 4 404 640 HOH HOH . TA 4 HOH M 1 701 620 HOH HOH . TA 4 HOH M 2 702 619 HOH HOH . TA 4 HOH M 3 703 622 HOH HOH . UA 4 HOH N 1 401 611 HOH HOH . UA 4 HOH N 2 402 630 HOH HOH . UA 4 HOH N 3 403 614 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . S 2 -36.736 10.677 -97.053 1 73.27 ? PA FAD 301 D 1 HETATM 2 O O1A FAD . . . S 2 -37.5 11.235 -98.192 1 69.65 ? O1A FAD 301 D 1 HETATM 3 O O2A FAD . . . S 2 -36.795 9.126 -96.871 1 77.03 ? O2A FAD 301 D 1 HETATM 4 O O5B FAD . . . S 2 -35.224 11.12 -96.901 1 77.88 ? O5B FAD 301 D 1 HETATM 5 C C5B FAD . . . S 2 -34.809 12.421 -97.334 1 82.56 ? C5B FAD 301 D 1 HETATM 6 C C4B FAD . . . S 2 -33.499 12.315 -98.076 1 91.61 ? C4B FAD 301 D 1 HETATM 7 O O4B FAD . . . S 2 -32.403 12.38 -97.135 1 95.68 ? O4B FAD 301 D 1 HETATM 8 C C3B FAD . . . S 2 -33.269 11.05 -98.906 1 96.05 ? C3B FAD 301 D 1 HETATM 9 O O3B FAD . . . S 2 -32.592 11.374 -100.118 1 96.66 ? O3B FAD 301 D 1 HETATM 10 C C2B FAD . . . S 2 -32.449 10.171 -97.953 1 99.46 ? C2B FAD 301 D 1 HETATM 11 O O2B FAD . . . S 2 -31.668 9.2 -98.639 1 103.73 ? O2B FAD 301 D 1 HETATM 12 C C1B FAD . . . S 2 -31.591 11.229 -97.254 1 98.31 ? C1B FAD 301 D 1 HETATM 13 N N9A FAD . . . S 2 -31.094 10.883 -95.924 1 99 ? N9A FAD 301 D 1 HETATM 14 C C8A FAD . . . S 2 -31.499 9.858 -95.106 1 100.9 ? C8A FAD 301 D 1 HETATM 15 N N7A FAD . . . S 2 -30.757 9.702 -94.036 1 103.1 ? N7A FAD 301 D 1 HETATM 16 C C5A FAD . . . S 2 -29.802 10.701 -94.149 1 103.38 ? C5A FAD 301 D 1 HETATM 17 C C6A FAD . . . S 2 -28.674 11.033 -93.367 1 103.63 ? C6A FAD 301 D 1 HETATM 18 N N6A FAD . . . S 2 -28.259 10.315 -92.319 1 102.98 ? N6A FAD 301 D 1 HETATM 19 N N1A FAD . . . S 2 -27.923 12.088 -93.765 1 103.55 ? N1A FAD 301 D 1 HETATM 20 C C2A FAD . . . S 2 -28.274 12.748 -94.877 1 101.95 ? C2A FAD 301 D 1 HETATM 21 N N3A FAD . . . S 2 -29.296 12.511 -95.707 1 99.4 ? N3A FAD 301 D 1 HETATM 22 C C4A FAD . . . S 2 -30.019 11.459 -95.292 1 100.5 ? C4A FAD 301 D 1 HETATM 23 N N1 FAD . . . S 2 -45.588 16.954 -97.466 1 51.63 ? N1 FAD 301 D 1 HETATM 24 C C2 FAD . . . S 2 -46.088 18.239 -97.254 1 47.1 ? C2 FAD 301 D 1 HETATM 25 O O2 FAD . . . S 2 -45.422 19.251 -97.516 1 41.46 ? O2 FAD 301 D 1 HETATM 26 N N3 FAD . . . S 2 -47.41 18.402 -96.797 1 47.55 ? N3 FAD 301 D 1 HETATM 27 C C4 FAD . . . S 2 -48.322 17.384 -96.574 1 52.2 ? C4 FAD 301 D 1 HETATM 28 O O4 FAD . . . S 2 -49.437 17.641 -96.132 1 57.32 ? O4 FAD 301 D 1 HETATM 29 C C4X FAD . . . S 2 -47.812 16.039 -96.849 1 53.93 ? C4X FAD 301 D 1 HETATM 30 N N5 FAD . . . S 2 -48.625 15.019 -96.677 1 54.25 ? N5 FAD 301 D 1 HETATM 31 C C5X FAD . . . S 2 -48.109 13.735 -96.854 1 54.99 ? C5X FAD 301 D 1 HETATM 32 C C6 FAD . . . S 2 -48.941 12.635 -96.626 1 53.89 ? C6 FAD 301 D 1 HETATM 33 C C7 FAD . . . S 2 -48.465 11.328 -96.691 1 55.44 ? C7 FAD 301 D 1 HETATM 34 C C7M FAD . . . S 2 -49.404 10.173 -96.434 1 53.9 ? C7M FAD 301 D 1 HETATM 35 C C8 FAD . . . S 2 -47.114 11.107 -97.003 1 60.84 ? C8 FAD 301 D 1 HETATM 36 C C8M FAD . . . S 2 -46.511 9.724 -96.928 1 64.25 ? C8M FAD 301 D 1 HETATM 37 C C9 FAD . . . S 2 -46.297 12.195 -97.297 1 61.28 ? C9 FAD 301 D 1 HETATM 38 C C9A FAD . . . S 2 -46.768 13.508 -97.212 1 59.69 ? C9A FAD 301 D 1 HETATM 39 N N10 FAD . . . S 2 -45.924 14.65 -97.425 1 59.51 ? N10 FAD 301 D 1 HETATM 40 C C10 FAD . . . S 2 -46.41 15.92 -97.265 1 55.56 ? C10 FAD 301 D 1 HETATM 41 C C1' FAD . . . S 2 -44.499 14.477 -97.764 1 58.06 ? C1' FAD 301 D 1 HETATM 42 C C2' FAD . . . S 2 -43.652 14.139 -96.544 1 58.92 ? C2' FAD 301 D 1 HETATM 43 O O2' FAD . . . S 2 -43.795 15.164 -95.566 1 62.88 ? O2' FAD 301 D 1 HETATM 44 C C3' FAD . . . S 2 -42.176 14.02 -96.918 1 61.89 ? C3' FAD 301 D 1 HETATM 45 O O3' FAD . . . S 2 -42.035 13.118 -98.007 1 66.13 ? O3' FAD 301 D 1 HETATM 46 C C4' FAD . . . S 2 -41.228 13.616 -95.791 1 59.99 ? C4' FAD 301 D 1 HETATM 47 O O4' FAD . . . S 2 -41.2 14.677 -94.834 1 61.67 ? O4' FAD 301 D 1 HETATM 48 C C5' FAD . . . S 2 -39.838 13.263 -96.268 1 58.23 ? C5' FAD 301 D 1 HETATM 49 O O5' FAD . . . S 2 -39.024 13.047 -95.098 1 58.89 ? O5' FAD 301 D 1 HETATM 50 P P FAD . . . S 2 -38.483 11.524 -94.841 1 64.68 ? P FAD 301 D 1 HETATM 51 O O1P FAD . . . S 2 -38.15 11.253 -93.436 1 63.76 ? O1P FAD 301 D 1 HETATM 52 O O2P FAD . . . S 2 -39.479 10.474 -95.361 1 63.57 ? O2P FAD 301 D 1 HETATM 53 O O3P FAD . . . S 2 -37.144 11.383 -95.689 1 70.03 ? O3P FAD 301 D 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 602 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #