data_5EAI # _model_server_result.job_id tWE585XoA-mrlzsoL0sNlQ _model_server_result.datetime_utc '2024-11-23 23:13:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":302}' # _entry.id 5EAI # _exptl.entry_id 5EAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.218 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{R})-2-[(2~{S},3~{S})-3-bromanyl-1,4-bis(oxidanylidene)-2,3-dihydronaphthalen-2-yl]-3-oxidanyl-2,3-dihydronaphthalene-1,4-dione _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EAI _cell.length_a 95.6 _cell.length_b 210.77 _cell.length_c 228.08 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 PISA dimeric 2 author_and_software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,O,P,Q,HA,IA 1 1 C,D,R,S,JA,KA 2 1 E,F,T,U,V,LA,MA 3 1 G,H,W,X,Y,NA,OA 4 1 I,J,Z,AA,PA,QA 5 1 K,L,BA,CA,DA,RA,SA 6 1 M,N,EA,FA,GA,TA,UA 7 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Q N N ? 3 U N N ? 3 Y N N ? 3 CA N N ? 3 FA N N # _chem_comp.formula 'C20 H13 Br O5' _chem_comp.formula_weight 413.218 _chem_comp.id E6A _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{R})-2-[(2~{S},3~{S})-3-bromanyl-1,4-bis(oxidanylidene)-2,3-dihydronaphthalen-2-yl]-3-oxidanyl-2,3-dihydronaphthalene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O41 C27 E6A sing 83 n n O38 C26 E6A doub 84 n n C16 C15 E6A doub 85 n y C16 C17 E6A sing 86 n y C15 C14 E6A sing 87 n y C27 C26 E6A sing 88 n n C27 C22 E6A sing 89 n n C17 C18 E6A doub 90 n y C14 C13 E6A doub 91 n y C5 C6 E6A sing 92 n n C5 C4 E6A sing 93 n n C5 BR E6A sing 94 n n C26 C25 E6A sing 95 n n C6 C22 E6A sing 96 n n C6 C1 E6A sing 97 n n C18 C13 E6A sing 98 n y C18 C4 E6A sing 99 n n C13 C1 E6A sing 100 n n C4 O20 E6A doub 101 n n C22 C23 E6A sing 102 n n C1 O19 E6A doub 103 n n C25 C34 E6A doub 104 n y C25 C24 E6A sing 105 n y C34 C35 E6A sing 106 n y C23 C24 E6A sing 107 n n C23 O40 E6A doub 108 n n C24 C37 E6A doub 109 n y C35 C36 E6A doub 110 n y C37 C36 E6A sing 111 n y C37 H1 E6A sing 112 n n C36 H2 E6A sing 113 n n C35 H3 E6A sing 114 n n C34 H4 E6A sing 115 n n C27 H5 E6A sing 116 n n O41 H6 E6A sing 117 n n C22 H7 E6A sing 118 n n C6 H8 E6A sing 119 n n C5 H9 E6A sing 120 n n C17 H10 E6A sing 121 n n C16 H11 E6A sing 122 n n C15 H12 E6A sing 123 n n C14 H13 E6A sing 124 n n # _atom_sites.entry_id 5EAI _atom_sites.fract_transf_matrix[1][1] 0.01046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 FAD A 1 601 601 FAD FAD . P 2 FAD B 1 301 603 FAD FAD . Q 3 E6A B 1 302 5 E6A E6A . R 2 FAD C 1 601 601 FAD FAD . S 2 FAD D 1 301 603 FAD FAD . T 2 FAD E 1 601 601 FAD FAD . U 3 E6A E 1 602 1 E6A E6A . V 2 FAD F 1 301 603 FAD FAD . W 2 FAD G 1 601 601 FAD FAD . X 2 FAD H 1 301 603 FAD FAD . Y 3 E6A H 1 302 2 E6A E6A . Z 2 FAD I 1 601 601 FAD FAD . AA 2 FAD J 1 301 603 FAD FAD . BA 2 FAD K 1 601 601 FAD FAD . CA 3 E6A K 1 602 3 E6A E6A . DA 2 FAD L 1 301 603 FAD FAD . EA 2 FAD M 1 601 601 FAD FAD . FA 3 E6A M 1 602 4 E6A E6A . GA 2 FAD N 1 301 603 FAD FAD . HA 4 HOH A 1 701 637 HOH HOH . HA 4 HOH A 2 702 618 HOH HOH . HA 4 HOH A 3 703 615 HOH HOH . HA 4 HOH A 4 704 629 HOH HOH . IA 4 HOH B 1 401 595 HOH HOH . IA 4 HOH B 2 402 631 HOH HOH . IA 4 HOH B 3 403 4 HOH HOH . IA 4 HOH B 4 404 609 HOH HOH . JA 4 HOH C 1 701 3 HOH HOH . KA 4 HOH D 1 401 628 HOH HOH . KA 4 HOH D 2 402 1 HOH HOH . KA 4 HOH D 3 403 613 HOH HOH . KA 4 HOH D 4 404 598 HOH HOH . LA 4 HOH E 1 701 623 HOH HOH . LA 4 HOH E 2 702 2 HOH HOH . LA 4 HOH E 3 703 599 HOH HOH . LA 4 HOH E 4 704 419 HOH HOH . LA 4 HOH E 5 705 606 HOH HOH . LA 4 HOH E 6 706 636 HOH HOH . MA 4 HOH F 1 401 602 HOH HOH . MA 4 HOH F 2 402 634 HOH HOH . NA 4 HOH G 1 701 608 HOH HOH . OA 4 HOH H 1 401 638 HOH HOH . OA 4 HOH H 2 402 632 HOH HOH . OA 4 HOH H 3 403 605 HOH HOH . PA 4 HOH I 1 701 627 HOH HOH . PA 4 HOH I 2 702 625 HOH HOH . PA 4 HOH I 3 703 6 HOH HOH . PA 4 HOH I 4 704 600 HOH HOH . PA 4 HOH I 5 705 594 HOH HOH . PA 4 HOH I 6 706 121 HOH HOH . PA 4 HOH I 7 707 596 HOH HOH . PA 4 HOH I 8 708 601 HOH HOH . QA 4 HOH J 1 401 626 HOH HOH . QA 4 HOH J 2 402 610 HOH HOH . QA 4 HOH J 3 403 639 HOH HOH . QA 4 HOH J 4 404 645 HOH HOH . RA 4 HOH K 1 701 624 HOH HOH . RA 4 HOH K 2 702 607 HOH HOH . RA 4 HOH K 3 703 603 HOH HOH . SA 4 HOH L 1 401 633 HOH HOH . SA 4 HOH L 2 402 616 HOH HOH . SA 4 HOH L 3 403 641 HOH HOH . SA 4 HOH L 4 404 640 HOH HOH . TA 4 HOH M 1 701 620 HOH HOH . TA 4 HOH M 2 702 619 HOH HOH . TA 4 HOH M 3 703 622 HOH HOH . UA 4 HOH N 1 401 611 HOH HOH . UA 4 HOH N 2 402 630 HOH HOH . UA 4 HOH N 3 403 614 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O40 E6A . . . Y 3 -33.461 -42.135 -79.615 1 94.53 ? O40 E6A 302 H 1 HETATM 2 C C23 E6A . . . Y 3 -34.22 -42.347 -80.566 1 92.48 ? C23 E6A 302 H 1 HETATM 3 C C24 E6A . . . Y 3 -35.558 -43.005 -80.238 1 87.33 ? C24 E6A 302 H 1 HETATM 4 C C37 E6A . . . Y 3 -35.953 -43.296 -78.921 0.5 84.16 ? C37 E6A 302 H 1 HETATM 5 C C36 E6A . . . Y 3 -37.21 -43.861 -78.671 0.5 82.04 ? C36 E6A 302 H 1 HETATM 6 C C35 E6A . . . Y 3 -38.09 -44.151 -79.717 0.5 81.39 ? C35 E6A 302 H 1 HETATM 7 C C34 E6A . . . Y 3 -37.741 -43.888 -81.047 0.5 82.67 ? C34 E6A 302 H 1 HETATM 8 C C25 E6A . . . Y 3 -36.513 -43.29 -81.343 1 84.88 ? C25 E6A 302 H 1 HETATM 9 C C26 E6A . . . Y 3 -36.085 -42.948 -82.747 1 86.77 ? C26 E6A 302 H 1 HETATM 10 O O38 E6A . . . Y 3 -36.636 -43.523 -83.675 1 87.14 ? O38 E6A 302 H 1 HETATM 11 C C27 E6A . . . Y 3 -34.982 -41.921 -83.019 1 88.85 ? C27 E6A 302 H 1 HETATM 12 O O41 E6A . . . Y 3 -34.513 -42.175 -84.363 1 88.09 ? O41 E6A 302 H 1 HETATM 13 C C22 E6A . . . Y 3 -33.795 -42.006 -82.013 1 92.54 ? C22 E6A 302 H 1 HETATM 14 C C6 E6A . . . Y 3 -32.721 -40.838 -81.825 1 95.65 ? C6 E6A 302 H 1 HETATM 15 C C5 E6A . . . Y 3 -32.867 -39.297 -82.361 1 100.27 ? C5 E6A 302 H 1 HETATM 16 BR BR E6A . . . Y 3 -34.287 -38.912 -83.738 1 104.18 ? BR E6A 302 H 1 HETATM 17 C C4 E6A . . . Y 3 -31.556 -38.685 -82.904 1 96.24 ? C4 E6A 302 H 1 HETATM 18 O O20 E6A . . . Y 3 -31.569 -37.692 -83.64 1 97.38 ? O20 E6A 302 H 1 HETATM 19 C C18 E6A . . . Y 3 -30.212 -39.179 -82.461 1 87.4 ? C18 E6A 302 H 1 HETATM 20 C C13 E6A . . . Y 3 -30.135 -40.606 -82.134 1 86.65 ? C13 E6A 302 H 1 HETATM 21 C C1 E6A . . . Y 3 -31.401 -41.385 -82.321 1 91.57 ? C1 E6A 302 H 1 HETATM 22 O O19 E6A . . . Y 3 -31.342 -42.508 -82.777 1 93.17 ? O19 E6A 302 H 1 HETATM 23 C C17 E6A . . . Y 3 -29.119 -38.351 -82.27 1 81.94 ? C17 E6A 302 H 1 HETATM 24 C C16 E6A . . . Y 3 -27.951 -38.918 -81.788 1 81.83 ? C16 E6A 302 H 1 HETATM 25 C C15 E6A . . . Y 3 -27.88 -40.276 -81.46 1 82.73 ? C15 E6A 302 H 1 HETATM 26 C C14 E6A . . . Y 3 -28.965 -41.131 -81.61 1 83.54 ? C14 E6A 302 H 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #