data_5EAK
#
_model_server_result.job_id            iOz8M5XcspYx8rZ8HckvYg 
_model_server_result.datetime_utc      '2025-04-10 13:00:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5eak 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1000}' 
#
_entry.id    5EAK 
#
_exptl.entry_id    5EAK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              421.519 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(1S,2R)-2-aminocyclohexyl]-4-[6-(1-methyl-1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-3-yl]thiophene-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5EAK 
_cell.length_a            118.739 
_cell.length_b            118.739 
_cell.length_c            106.592 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EAK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H23 N7 O S' 
_chem_comp.formula_weight    421.519 
_chem_comp.id                24R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(1S,2R)-2-aminocyclohexyl]-4-[6-(1-methyl-1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-3-yl]thiophene-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 24R doub 1 n y 
C N4 24R sing 2 n y 
C1 C2 24R sing 3 n y 
C1 C14 24R sing 4 n n 
C2 N 24R doub 5 n y 
N C3 24R sing 6 n y 
C3 N4 24R sing 7 n y 
C3 C6 24R doub 8 n y 
N4 N5 24R sing 9 n y 
N5 C7 24R doub 10 n y 
C6 C7 24R sing 11 n y 
C6 C8 24R sing 12 n n 
C8 C9 24R doub 13 n y 
C8 C11 24R sing 14 n y 
C9 S 24R sing 15 n y 
S C10 24R sing 16 n y 
C10 C11 24R doub 17 n y 
C10 C12 24R sing 18 n n 
C12 N13 24R sing 19 n n 
C12 O 24R doub 20 n n 
N13 C20 24R sing 21 n n 
C14 C15 24R doub 22 n y 
C14 C18 24R sing 23 n y 
C15 N16 24R sing 24 n y 
N16 N17 24R sing 25 n y 
N16 C19 24R sing 26 n n 
N17 C18 24R doub 27 n y 
C20 C21 24R sing 28 n n 
C20 C23 24R sing 29 n n 
C21 N22 24R sing 30 n n 
C21 C26 24R sing 31 n n 
C23 C24 24R sing 32 n n 
C24 C25 24R sing 33 n n 
C25 C26 24R sing 34 n n 
C H 24R sing 35 n n 
C2 H2 24R sing 36 n n 
C7 H7 24R sing 37 n n 
C9 H9 24R sing 38 n n 
C11 H11 24R sing 39 n n 
N13 HN13 24R sing 40 n n 
C15 H15 24R sing 41 n n 
C18 H18 24R sing 42 n n 
C19 H19 24R sing 43 n n 
C19 H19A 24R sing 44 n n 
C19 H19B 24R sing 45 n n 
C20 H20 24R sing 46 n n 
C21 H21 24R sing 47 n n 
N22 HN22 24R sing 48 n n 
N22 HN2A 24R sing 49 n n 
C23 H23 24R sing 50 n n 
C23 H23A 24R sing 51 n n 
C24 H24 24R sing 52 n n 
C24 H24A 24R sing 53 n n 
C25 H25 24R sing 54 n n 
C25 H25A 24R sing 55 n n 
C26 H26 24R sing 56 n n 
C26 H26A 24R sing 57 n n 
#
_atom_sites.entry_id                     5EAK 
_atom_sites.fract_transf_matrix[1][1]    0.008422 
_atom_sites.fract_transf_matrix[1][2]    0.004862 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 24R A 1 1000 1000 24R 24R . 
D 2 24R B 1 1000 1000 24R 24R . 
E 3 HOH A 1 1101 4 HOH HOH . 
E 3 HOH A 2 1102 6 HOH HOH . 
E 3 HOH A 3 1103 1 HOH HOH . 
F 3 HOH B 1 1101 5 HOH HOH . 
F 3 HOH B 2 1102 3 HOH HOH . 
F 3 HOH B 3 1103 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 24R . . . D 2 61.796 46.895 0.004 1 30.65 ? C 24R 1000 B 1 
HETATM 2 C C1 24R . . . D 2 61.916 46.628 -1.356 1 33.5 ? C1 24R 1000 B 1 
HETATM 3 C C2 24R . . . D 2 62.774 47.504 -1.997 1 29.77 ? C2 24R 1000 B 1 
HETATM 4 N N 24R . . . D 2 63.449 48.522 -1.428 1 30.16 ? N 24R 1000 B 1 
HETATM 5 C C3 24R . . . D 2 63.273 48.708 -0.101 1 24.96 ? C3 24R 1000 B 1 
HETATM 6 N N4 24R . . . D 2 62.457 47.905 0.612 1 23.21 ? N4 24R 1000 B 1 
HETATM 7 N N5 24R . . . D 2 62.406 48.226 1.903 1 19.49 ? N5 24R 1000 B 1 
HETATM 8 C C6 24R . . . D 2 63.8 49.629 0.791 1 25.14 ? C6 24R 1000 B 1 
HETATM 9 C C7 24R . . . D 2 63.216 49.286 2.007 1 22.04 ? C7 24R 1000 B 1 
HETATM 10 C C8 24R . . . D 2 64.742 50.768 0.555 1 26.63 ? C8 24R 1000 B 1 
HETATM 11 C C9 24R . . . D 2 65.232 51.573 1.579 1 27.66 ? C9 24R 1000 B 1 
HETATM 12 S S 24R . . . D 2 66.275 52.794 0.986 1 25.7 ? S 24R 1000 B 1 
HETATM 13 C C10 24R . . . D 2 66.064 52.286 -0.636 1 26.37 ? C10 24R 1000 B 1 
HETATM 14 C C11 24R . . . D 2 65.21 51.183 -0.702 1 24.68 ? C11 24R 1000 B 1 
HETATM 15 C C12 24R . . . D 2 66.772 53.013 -1.734 1 30.28 ? C12 24R 1000 B 1 
HETATM 16 N N13 24R . . . D 2 66.563 52.641 -3 1 26.12 ? N13 24R 1000 B 1 
HETATM 17 O O 24R . . . D 2 67.533 53.936 -1.492 1 32.99 ? O 24R 1000 B 1 
HETATM 18 C C14 24R . . . D 2 61.22 45.539 -2.083 1 31.55 ? C14 24R 1000 B 1 
HETATM 19 C C15 24R . . . D 2 60.522 44.486 -1.523 1 30.66 ? C15 24R 1000 B 1 
HETATM 20 N N16 24R . . . D 2 60.063 43.755 -2.561 1 36.25 ? N16 24R 1000 B 1 
HETATM 21 N N17 24R . . . D 2 60.389 44.244 -3.756 1 31.09 ? N17 24R 1000 B 1 
HETATM 22 C C18 24R . . . D 2 61.098 45.348 -3.449 1 29.58 ? C18 24R 1000 B 1 
HETATM 23 C C19 24R . . . D 2 59.264 42.53 -2.468 1 32.91 ? C19 24R 1000 B 1 
HETATM 24 C C20 24R . . . D 2 67.34 53.229 -4.082 1 22.04 ? C20 24R 1000 B 1 
HETATM 25 C C21 24R . . . D 2 66.576 53.363 -5.405 1 27.63 ? C21 24R 1000 B 1 
HETATM 26 N N22 24R . . . D 2 65.352 54.211 -5.287 1 27.52 ? N22 24R 1000 B 1 
HETATM 27 C C23 24R . . . D 2 68.633 52.431 -4.284 1 24.84 ? C23 24R 1000 B 1 
HETATM 28 C C24 24R . . . D 2 68.47 51.115 -5.057 1 28.01 ? C24 24R 1000 B 1 
HETATM 29 C C25 24R . . . D 2 67.515 51.186 -6.261 1 23.88 ? C25 24R 1000 B 1 
HETATM 30 C C26 24R . . . D 2 66.242 52.017 -6.053 1 16.76 ? C26 24R 1000 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           392 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#