data_5EAT # _model_server_result.job_id LRU2k81FgaQOHkpr7_VGAQ _model_server_result.datetime_utc '2024-11-26 11:34:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5EAT # _exptl.entry_id 5EAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.346 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-HYDROXY-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENE PHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EAT _cell.length_a 126.33 _cell.length_b 126.33 _cell.length_c 121.698 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 301 A ASP 301 1_555 C MG MG . A MG 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc2 A OD2 ASP 301 A ASP 301 1_555 D MG MG . A MG 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc3 A OD1 ASP 305 A ASP 305 1_555 C MG MG . A MG 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc4 A OD2 ASP 305 A ASP 305 1_555 D MG MG . A MG 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc5 A OD1 ASP 444 A ASP 444 1_555 B MG MG . A MG 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 A OG1 THR 448 A THR 448 1_555 B MG MG . A MG 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc7 A OE1 GLU 452 A GLU 452 1_555 B MG MG . A MG 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc8 A OE2 GLU 452 A GLU 452 1_555 B MG MG . A MG 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc9 F O HOH . A HOH 751 1_555 C MG MG . A MG 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc10 F O HOH . A HOH 751 1_555 D MG MG . A MG 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc11 F O HOH . A HOH 753 1_555 D MG MG . A MG 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc12 F O HOH . A HOH 754 1_555 D MG MG . A MG 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc13 D MG MG . A MG 853 1_555 E O2A FHP . A FHP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C15 H27 O4 P' _chem_comp.formula_weight 302.346 _chem_comp.id FHP _chem_comp.mon_nstd_flag . _chem_comp.name '1-HYDROXY-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENE PHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'FARNESYL HYDROXYPHOSPHONATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FHP sing 83 n n C1 O1 FHP sing 84 n n C1 PA FHP sing 85 n n C1 H1 FHP sing 86 n n C2 C3 FHP doub 87 e n C2 H2 FHP sing 88 n n C3 C4 FHP sing 89 n n C3 C15 FHP sing 90 n n C4 C5 FHP sing 91 n n C4 H41 FHP sing 92 n n C4 H42 FHP sing 93 n n C5 C6 FHP sing 94 n n C5 H51 FHP sing 95 n n C5 H52 FHP sing 96 n n C6 C7 FHP doub 97 e n C6 H6 FHP sing 98 n n C7 C8 FHP sing 99 n n C7 C14 FHP sing 100 n n C8 C9 FHP sing 101 n n C8 H81 FHP sing 102 n n C8 H82 FHP sing 103 n n C9 C10 FHP sing 104 n n C9 H91 FHP sing 105 n n C9 H92 FHP sing 106 n n C10 C11 FHP doub 107 n n C10 H10 FHP sing 108 n n C11 C12 FHP sing 109 n n C11 C13 FHP sing 110 n n C12 H121 FHP sing 111 n n C12 H122 FHP sing 112 n n C12 H123 FHP sing 113 n n C13 H131 FHP sing 114 n n C13 H132 FHP sing 115 n n C13 H133 FHP sing 116 n n C14 H141 FHP sing 117 n n C14 H142 FHP sing 118 n n C14 H143 FHP sing 119 n n C15 H151 FHP sing 120 n n C15 H152 FHP sing 121 n n C15 H153 FHP sing 122 n n O1 HO1 FHP sing 123 n n O1A PA FHP doub 124 n n O2A PA FHP sing 125 n n O2A HOA2 FHP sing 126 n n O3A PA FHP sing 127 n n O3A HOA3 FHP sing 128 n n # _atom_sites.entry_id 5EAT _atom_sites.fract_transf_matrix[1][1] 0.007916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 851 851 MG MG . C 2 MG A 1 852 852 MG MG . D 2 MG A 1 853 853 MG MG . E 3 FHP A 1 900 900 FHP FHP . F 4 HOH A 1 601 601 HOH HOH . F 4 HOH A 2 602 602 HOH HOH . F 4 HOH A 3 603 603 HOH HOH . F 4 HOH A 4 604 604 HOH HOH . F 4 HOH A 5 605 605 HOH HOH . F 4 HOH A 6 606 606 HOH HOH . F 4 HOH A 7 607 607 HOH HOH . F 4 HOH A 8 608 608 HOH HOH . F 4 HOH A 9 609 609 HOH HOH . F 4 HOH A 10 610 610 HOH HOH . F 4 HOH A 11 611 611 HOH HOH . F 4 HOH A 12 612 612 HOH HOH . F 4 HOH A 13 613 613 HOH HOH . F 4 HOH A 14 614 614 HOH HOH . F 4 HOH A 15 615 615 HOH HOH . F 4 HOH A 16 616 616 HOH HOH . F 4 HOH A 17 617 617 HOH HOH . F 4 HOH A 18 618 618 HOH HOH . F 4 HOH A 19 619 619 HOH HOH . F 4 HOH A 20 620 620 HOH HOH . F 4 HOH A 21 621 621 HOH HOH . F 4 HOH A 22 622 622 HOH HOH . F 4 HOH A 23 623 623 HOH HOH . F 4 HOH A 24 624 624 HOH HOH . F 4 HOH A 25 625 625 HOH HOH . F 4 HOH A 26 626 626 HOH HOH . F 4 HOH A 27 627 627 HOH HOH . F 4 HOH A 28 628 628 HOH HOH . F 4 HOH A 29 629 629 HOH HOH . F 4 HOH A 30 630 630 HOH HOH . F 4 HOH A 31 631 631 HOH HOH . F 4 HOH A 32 632 632 HOH HOH . F 4 HOH A 33 633 633 HOH HOH . F 4 HOH A 34 634 634 HOH HOH . F 4 HOH A 35 635 635 HOH HOH . F 4 HOH A 36 636 636 HOH HOH . F 4 HOH A 37 637 637 HOH HOH . F 4 HOH A 38 638 638 HOH HOH . F 4 HOH A 39 639 639 HOH HOH . F 4 HOH A 40 640 640 HOH HOH . F 4 HOH A 41 641 641 HOH HOH . F 4 HOH A 42 642 642 HOH HOH . F 4 HOH A 43 643 643 HOH HOH . F 4 HOH A 44 644 644 HOH HOH . F 4 HOH A 45 645 645 HOH HOH . F 4 HOH A 46 646 646 HOH HOH . F 4 HOH A 47 647 647 HOH HOH . F 4 HOH A 48 648 648 HOH HOH . F 4 HOH A 49 649 649 HOH HOH . F 4 HOH A 50 650 650 HOH HOH . F 4 HOH A 51 651 651 HOH HOH . F 4 HOH A 52 652 652 HOH HOH . F 4 HOH A 53 653 653 HOH HOH . F 4 HOH A 54 654 654 HOH HOH . F 4 HOH A 55 655 655 HOH HOH . F 4 HOH A 56 656 656 HOH HOH . F 4 HOH A 57 657 657 HOH HOH . F 4 HOH A 58 658 658 HOH HOH . F 4 HOH A 59 659 659 HOH HOH . F 4 HOH A 60 660 660 HOH HOH . F 4 HOH A 61 661 661 HOH HOH . F 4 HOH A 62 662 662 HOH HOH . F 4 HOH A 63 663 663 HOH HOH . F 4 HOH A 64 664 664 HOH HOH . F 4 HOH A 65 665 665 HOH HOH . F 4 HOH A 66 666 666 HOH HOH . F 4 HOH A 67 667 667 HOH HOH . F 4 HOH A 68 668 668 HOH HOH . F 4 HOH A 69 669 669 HOH HOH . F 4 HOH A 70 670 670 HOH HOH . F 4 HOH A 71 671 671 HOH HOH . F 4 HOH A 72 672 672 HOH HOH . F 4 HOH A 73 673 673 HOH HOH . F 4 HOH A 74 674 674 HOH HOH . F 4 HOH A 75 675 675 HOH HOH . F 4 HOH A 76 676 676 HOH HOH . F 4 HOH A 77 677 677 HOH HOH . F 4 HOH A 78 678 678 HOH HOH . F 4 HOH A 79 679 679 HOH HOH . F 4 HOH A 80 680 680 HOH HOH . F 4 HOH A 81 681 681 HOH HOH . F 4 HOH A 82 682 682 HOH HOH . F 4 HOH A 83 683 683 HOH HOH . F 4 HOH A 84 684 684 HOH HOH . F 4 HOH A 85 685 685 HOH HOH . F 4 HOH A 86 686 686 HOH HOH . F 4 HOH A 87 687 687 HOH HOH . F 4 HOH A 88 688 688 HOH HOH . F 4 HOH A 89 689 689 HOH HOH . F 4 HOH A 90 690 690 HOH HOH . F 4 HOH A 91 691 691 HOH HOH . F 4 HOH A 92 692 692 HOH HOH . F 4 HOH A 93 693 693 HOH HOH . F 4 HOH A 94 694 694 HOH HOH . F 4 HOH A 95 695 695 HOH HOH . F 4 HOH A 96 696 696 HOH HOH . F 4 HOH A 97 697 697 HOH HOH . F 4 HOH A 98 698 698 HOH HOH . F 4 HOH A 99 699 699 HOH HOH . F 4 HOH A 100 700 700 HOH HOH . F 4 HOH A 101 701 701 HOH HOH . F 4 HOH A 102 702 702 HOH HOH . F 4 HOH A 103 703 703 HOH HOH . F 4 HOH A 104 704 704 HOH HOH . F 4 HOH A 105 705 705 HOH HOH . F 4 HOH A 106 706 706 HOH HOH . F 4 HOH A 107 707 707 HOH HOH . F 4 HOH A 108 708 708 HOH HOH . F 4 HOH A 109 709 709 HOH HOH . F 4 HOH A 110 710 710 HOH HOH . F 4 HOH A 111 711 711 HOH HOH . F 4 HOH A 112 712 712 HOH HOH . F 4 HOH A 113 713 713 HOH HOH . F 4 HOH A 114 714 714 HOH HOH . F 4 HOH A 115 715 715 HOH HOH . F 4 HOH A 116 716 716 HOH HOH . F 4 HOH A 117 717 717 HOH HOH . F 4 HOH A 118 718 718 HOH HOH . F 4 HOH A 119 719 719 HOH HOH . F 4 HOH A 120 720 720 HOH HOH . F 4 HOH A 121 721 721 HOH HOH . F 4 HOH A 122 722 722 HOH HOH . F 4 HOH A 123 723 723 HOH HOH . F 4 HOH A 124 724 724 HOH HOH . F 4 HOH A 125 725 725 HOH HOH . F 4 HOH A 126 726 726 HOH HOH . F 4 HOH A 127 727 727 HOH HOH . F 4 HOH A 128 728 728 HOH HOH . F 4 HOH A 129 729 729 HOH HOH . F 4 HOH A 130 730 730 HOH HOH . F 4 HOH A 131 731 731 HOH HOH . F 4 HOH A 132 732 732 HOH HOH . F 4 HOH A 133 733 733 HOH HOH . F 4 HOH A 134 734 734 HOH HOH . F 4 HOH A 135 735 735 HOH HOH . F 4 HOH A 136 736 736 HOH HOH . F 4 HOH A 137 737 737 HOH HOH . F 4 HOH A 138 738 738 HOH HOH . F 4 HOH A 139 739 739 HOH HOH . F 4 HOH A 140 740 740 HOH HOH . F 4 HOH A 141 741 741 HOH HOH . F 4 HOH A 142 742 742 HOH HOH . F 4 HOH A 143 743 743 HOH HOH . F 4 HOH A 144 744 744 HOH HOH . F 4 HOH A 145 745 745 HOH HOH . F 4 HOH A 146 746 746 HOH HOH . F 4 HOH A 147 747 747 HOH HOH . F 4 HOH A 148 748 748 HOH HOH . F 4 HOH A 149 749 749 HOH HOH . F 4 HOH A 150 750 750 HOH HOH . F 4 HOH A 151 751 751 HOH HOH . F 4 HOH A 152 752 752 HOH HOH . F 4 HOH A 153 753 753 HOH HOH . F 4 HOH A 154 754 754 HOH HOH . F 4 HOH A 155 755 755 HOH HOH . F 4 HOH A 156 756 756 HOH HOH . F 4 HOH A 157 757 757 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FHP . . . E 3 108.025 40.315 49.769 1 64 ? C1 FHP 900 A 1 HETATM 2 C C2 FHP . . . E 3 108.69 38.93 49.523 1 61.37 ? C2 FHP 900 A 1 HETATM 3 C C3 FHP . . . E 3 109.069 38.562 48.285 1 51.27 ? C3 FHP 900 A 1 HETATM 4 C C4 FHP . . . E 3 109.443 37.123 48.011 1 49.88 ? C4 FHP 900 A 1 HETATM 5 C C5 FHP . . . E 3 110.87 36.593 48.349 1 48.79 ? C5 FHP 900 A 1 HETATM 6 C C6 FHP . . . E 3 112.049 37.566 48.069 1 37.71 ? C6 FHP 900 A 1 HETATM 7 C C7 FHP . . . E 3 112.32 38.019 46.829 1 34.33 ? C7 FHP 900 A 1 HETATM 8 C C8 FHP . . . E 3 113.476 38.969 46.623 1 35.58 ? C8 FHP 900 A 1 HETATM 9 C C9 FHP . . . E 3 113.227 40.333 47.247 1 56.66 ? C9 FHP 900 A 1 HETATM 10 C C10 FHP . . . E 3 113.089 40.275 48.776 1 68.86 ? C10 FHP 900 A 1 HETATM 11 C C11 FHP . . . E 3 112.157 41.01 49.392 1 73.13 ? C11 FHP 900 A 1 HETATM 12 C C12 FHP . . . E 3 112.037 40.934 50.893 1 66.86 ? C12 FHP 900 A 1 HETATM 13 C C13 FHP . . . E 3 111.421 42.067 48.641 1 68.76 ? C13 FHP 900 A 1 HETATM 14 C C14 FHP . . . E 3 111.753 37.299 45.656 1 41.06 ? C14 FHP 900 A 1 HETATM 15 C C15 FHP . . . E 3 108.853 39.5 47.137 1 54.81 ? C15 FHP 900 A 1 HETATM 16 O O1 FHP . . . E 3 108.952 41.335 50.186 1 61.96 ? O1 FHP 900 A 1 HETATM 17 O O1A FHP . . . E 3 106.467 39.079 51.657 1 56.34 ? O1A FHP 900 A 1 HETATM 18 O O2A FHP . . . E 3 106.738 41.56 51.467 1 62.5 ? O2A FHP 900 A 1 HETATM 19 O O3A FHP . . . E 3 105.506 40.292 49.674 1 62.63 ? O3A FHP 900 A 1 HETATM 20 P PA FHP . . . E 3 106.514 40.269 50.769 1 64.84 ? PA FHP 900 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #