data_5EAU # _model_server_result.job_id R3eYfht_BLLEvAfS0p3QXg _model_server_result.datetime_utc '2024-11-29 23:10:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":800}' # _entry.id 5EAU # _exptl.entry_id 5EAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 436.298 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIFLUOROFURNESYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EAU _cell.length_a 125.96 _cell.length_b 125.96 _cell.length_c 122.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 301 A ASP 301 1_555 B MG MG . A MG 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 A OD2 ASP 305 A ASP 305 1_555 B MG MG . A MG 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc3 A OD1 ASP 444 A ASP 444 1_555 C MG MG . A MG 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc4 A OG1 THR 448 A THR 448 1_555 C MG MG . A MG 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc5 A OE2 GLU 452 A GLU 452 1_555 C MG MG . A MG 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc6 E O HOH . A HOH 638 1_555 C MG MG . A MG 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc7 E O HOH . A HOH 731 1_555 B MG MG . A MG 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc8 B MG MG . A MG 732 1_555 D O1B FFF . A FFF 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc9 B MG MG . A MG 732 1_555 D O3B FFF . A FFF 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? # _chem_comp.formula 'C15 H25 F3 O7 P2' _chem_comp.formula_weight 436.298 _chem_comp.id FFF _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIFLUOROFURNESYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FFF doub 83 n n PA O2A FFF sing 84 n n PA O5A FFF sing 85 n n PA O3A FFF sing 86 n n O2A HOA2 FFF sing 87 n n O5A C1 FFF sing 88 n n PB O1B FFF doub 89 n n PB O2B FFF sing 90 n n PB O3A FFF sing 91 n n PB O3B FFF sing 92 n n O2B HOB2 FFF sing 93 n n O3B HOB3 FFF sing 94 n n C1 C2 FFF sing 95 n n C1 H11 FFF sing 96 n n C1 H12 FFF sing 97 n n C2 C3 FFF doub 98 z n C2 H2 FFF sing 99 n n C3 C4 FFF sing 100 n n C3 C14 FFF sing 101 n n C4 C5 FFF sing 102 n n C4 H41 FFF sing 103 n n C4 H42 FFF sing 104 n n C5 C6 FFF sing 105 n n C5 H51 FFF sing 106 n n C5 H52 FFF sing 107 n n C6 C7 FFF doub 108 e n C6 H6 FFF sing 109 n n C7 C8 FFF sing 110 n n C7 C13 FFF sing 111 n n C8 C9 FFF sing 112 n n C8 H81 FFF sing 113 n n C8 H82 FFF sing 114 n n C9 C10 FFF sing 115 n n C9 H91 FFF sing 116 n n C9 H92 FFF sing 117 n n C10 C11 FFF doub 118 n n C10 H10 FFF sing 119 n n C11 C12 FFF sing 120 n n C11 C15 FFF sing 121 n n C12 H121 FFF sing 122 n n C12 H122 FFF sing 123 n n C12 H123 FFF sing 124 n n C15 H151 FFF sing 125 n n C15 H152 FFF sing 126 n n C15 H153 FFF sing 127 n n C13 H131 FFF sing 128 n n C13 H132 FFF sing 129 n n C13 H133 FFF sing 130 n n C14 F1 FFF sing 131 n n C14 F2 FFF sing 132 n n C14 F3 FFF sing 133 n n # _atom_sites.entry_id 5EAU _atom_sites.fract_transf_matrix[1][1] 0.007939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 732 732 MG MG . C 2 MG A 1 733 733 MG MG . D 3 FFF A 1 800 800 FFF FFF . E 4 HOH A 1 601 601 HOH HOH . E 4 HOH A 2 602 602 HOH HOH . E 4 HOH A 3 603 603 HOH HOH . E 4 HOH A 4 604 604 HOH HOH . E 4 HOH A 5 605 605 HOH HOH . E 4 HOH A 6 606 606 HOH HOH . E 4 HOH A 7 607 607 HOH HOH . E 4 HOH A 8 608 608 HOH HOH . E 4 HOH A 9 609 609 HOH HOH . E 4 HOH A 10 610 610 HOH HOH . E 4 HOH A 11 611 611 HOH HOH . E 4 HOH A 12 612 612 HOH HOH . E 4 HOH A 13 613 613 HOH HOH . E 4 HOH A 14 614 614 HOH HOH . E 4 HOH A 15 615 615 HOH HOH . E 4 HOH A 16 616 616 HOH HOH . E 4 HOH A 17 617 617 HOH HOH . E 4 HOH A 18 618 618 HOH HOH . E 4 HOH A 19 619 619 HOH HOH . E 4 HOH A 20 620 620 HOH HOH . E 4 HOH A 21 621 621 HOH HOH . E 4 HOH A 22 622 622 HOH HOH . E 4 HOH A 23 623 623 HOH HOH . E 4 HOH A 24 624 624 HOH HOH . E 4 HOH A 25 625 625 HOH HOH . E 4 HOH A 26 626 626 HOH HOH . E 4 HOH A 27 627 627 HOH HOH . E 4 HOH A 28 628 628 HOH HOH . E 4 HOH A 29 629 629 HOH HOH . E 4 HOH A 30 630 630 HOH HOH . E 4 HOH A 31 631 631 HOH HOH . E 4 HOH A 32 632 632 HOH HOH . E 4 HOH A 33 633 633 HOH HOH . E 4 HOH A 34 634 634 HOH HOH . E 4 HOH A 35 635 635 HOH HOH . E 4 HOH A 36 636 636 HOH HOH . E 4 HOH A 37 637 637 HOH HOH . E 4 HOH A 38 638 638 HOH HOH . E 4 HOH A 39 639 639 HOH HOH . E 4 HOH A 40 640 640 HOH HOH . E 4 HOH A 41 641 641 HOH HOH . E 4 HOH A 42 642 642 HOH HOH . E 4 HOH A 43 643 643 HOH HOH . E 4 HOH A 44 644 644 HOH HOH . E 4 HOH A 45 645 645 HOH HOH . E 4 HOH A 46 646 646 HOH HOH . E 4 HOH A 47 647 647 HOH HOH . E 4 HOH A 48 648 648 HOH HOH . E 4 HOH A 49 649 649 HOH HOH . E 4 HOH A 50 650 650 HOH HOH . E 4 HOH A 51 651 651 HOH HOH . E 4 HOH A 52 652 652 HOH HOH . E 4 HOH A 53 653 653 HOH HOH . E 4 HOH A 54 654 654 HOH HOH . E 4 HOH A 55 655 655 HOH HOH . E 4 HOH A 56 656 656 HOH HOH . E 4 HOH A 57 657 657 HOH HOH . E 4 HOH A 58 658 658 HOH HOH . E 4 HOH A 59 659 659 HOH HOH . E 4 HOH A 60 660 660 HOH HOH . E 4 HOH A 61 661 661 HOH HOH . E 4 HOH A 62 662 662 HOH HOH . E 4 HOH A 63 663 663 HOH HOH . E 4 HOH A 64 664 664 HOH HOH . E 4 HOH A 65 665 665 HOH HOH . E 4 HOH A 66 666 666 HOH HOH . E 4 HOH A 67 667 667 HOH HOH . E 4 HOH A 68 668 668 HOH HOH . E 4 HOH A 69 669 669 HOH HOH . E 4 HOH A 70 670 670 HOH HOH . E 4 HOH A 71 671 671 HOH HOH . E 4 HOH A 72 672 672 HOH HOH . E 4 HOH A 73 673 673 HOH HOH . E 4 HOH A 74 674 674 HOH HOH . E 4 HOH A 75 675 675 HOH HOH . E 4 HOH A 76 676 676 HOH HOH . E 4 HOH A 77 677 677 HOH HOH . E 4 HOH A 78 678 678 HOH HOH . E 4 HOH A 79 679 679 HOH HOH . E 4 HOH A 80 680 680 HOH HOH . E 4 HOH A 81 681 681 HOH HOH . E 4 HOH A 82 682 682 HOH HOH . E 4 HOH A 83 683 683 HOH HOH . E 4 HOH A 84 684 684 HOH HOH . E 4 HOH A 85 685 685 HOH HOH . E 4 HOH A 86 686 686 HOH HOH . E 4 HOH A 87 687 687 HOH HOH . E 4 HOH A 88 688 688 HOH HOH . E 4 HOH A 89 689 689 HOH HOH . E 4 HOH A 90 690 690 HOH HOH . E 4 HOH A 91 691 691 HOH HOH . E 4 HOH A 92 692 692 HOH HOH . E 4 HOH A 93 693 693 HOH HOH . E 4 HOH A 94 694 694 HOH HOH . E 4 HOH A 95 695 695 HOH HOH . E 4 HOH A 96 696 696 HOH HOH . E 4 HOH A 97 697 697 HOH HOH . E 4 HOH A 98 698 698 HOH HOH . E 4 HOH A 99 699 699 HOH HOH . E 4 HOH A 100 700 700 HOH HOH . E 4 HOH A 101 701 701 HOH HOH . E 4 HOH A 102 702 702 HOH HOH . E 4 HOH A 103 703 703 HOH HOH . E 4 HOH A 104 704 704 HOH HOH . E 4 HOH A 105 705 705 HOH HOH . E 4 HOH A 106 706 706 HOH HOH . E 4 HOH A 107 707 707 HOH HOH . E 4 HOH A 108 708 708 HOH HOH . E 4 HOH A 109 709 709 HOH HOH . E 4 HOH A 110 710 710 HOH HOH . E 4 HOH A 111 711 711 HOH HOH . E 4 HOH A 112 712 712 HOH HOH . E 4 HOH A 113 713 713 HOH HOH . E 4 HOH A 114 714 714 HOH HOH . E 4 HOH A 115 715 715 HOH HOH . E 4 HOH A 116 716 716 HOH HOH . E 4 HOH A 117 717 717 HOH HOH . E 4 HOH A 118 718 718 HOH HOH . E 4 HOH A 119 719 719 HOH HOH . E 4 HOH A 120 720 720 HOH HOH . E 4 HOH A 121 721 721 HOH HOH . E 4 HOH A 122 722 722 HOH HOH . E 4 HOH A 123 723 723 HOH HOH . E 4 HOH A 124 724 724 HOH HOH . E 4 HOH A 125 725 725 HOH HOH . E 4 HOH A 126 726 726 HOH HOH . E 4 HOH A 127 727 727 HOH HOH . E 4 HOH A 128 728 728 HOH HOH . E 4 HOH A 129 729 729 HOH HOH . E 4 HOH A 130 730 730 HOH HOH . E 4 HOH A 131 731 731 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FFF . . . D 3 20.906 79.34 10.25 0.48 36.75 ? PA FFF 800 A 1 HETATM 2 O O1A FFF . . . D 3 19.489 79.76 10.314 0.48 42.49 ? O1A FFF 800 A 1 HETATM 3 O O2A FFF . . . D 3 21.487 78.879 8.971 0.48 43.04 ? O2A FFF 800 A 1 HETATM 4 O O5A FFF . . . D 3 21.17 78.211 11.369 0.48 41.56 ? O5A FFF 800 A 1 HETATM 5 P PB FFF . . . D 3 21.863 82.023 10.173 0.48 33.53 ? PB FFF 800 A 1 HETATM 6 O O1B FFF . . . D 3 20.431 82.347 10.025 0.48 37.32 ? O1B FFF 800 A 1 HETATM 7 O O2B FFF . . . D 3 22.592 81.817 8.904 0.48 31.68 ? O2B FFF 800 A 1 HETATM 8 O O3A FFF . . . D 3 21.809 80.551 10.795 0.48 36.84 ? O3A FFF 800 A 1 HETATM 9 O O3B FFF . . . D 3 22.591 82.797 11.202 0.48 32.89 ? O3B FFF 800 A 1 HETATM 10 C C1 FFF . . . D 3 20.856 78.543 12.696 0.48 39.13 ? C1 FFF 800 A 1 HETATM 11 C C2 FFF . . . D 3 21.213 77.393 13.646 0.48 41.74 ? C2 FFF 800 A 1 HETATM 12 C C3 FFF . . . D 3 20.958 77.484 14.971 0.48 42.32 ? C3 FFF 800 A 1 HETATM 13 C C4 FFF . . . D 3 21.103 76.26 15.831 0.48 38.79 ? C4 FFF 800 A 1 HETATM 14 C C5 FFF . . . D 3 22.232 76.279 16.858 0.48 31.93 ? C5 FFF 800 A 1 HETATM 15 C C6 FFF . . . D 3 23.323 75.227 16.619 0.48 28.94 ? C6 FFF 800 A 1 HETATM 16 C C7 FFF . . . D 3 24.363 75.502 15.826 0.48 24.6 ? C7 FFF 800 A 1 HETATM 17 C C8 FFF . . . D 3 25.416 74.447 15.603 0.48 21.35 ? C8 FFF 800 A 1 HETATM 18 C C9 FFF . . . D 3 25.9 74.16 14.173 0.48 18.59 ? C9 FFF 800 A 1 HETATM 19 C C10 FFF . . . D 3 26.664 75.316 13.522 0.48 30.15 ? C10 FFF 800 A 1 HETATM 20 C C11 FFF . . . D 3 26.049 76.132 12.647 0.48 38.69 ? C11 FFF 800 A 1 HETATM 21 C C12 FFF . . . D 3 26.81 77.267 12.041 0.48 40.46 ? C12 FFF 800 A 1 HETATM 22 C C15 FFF . . . D 3 24.742 75.718 12.042 0.48 44.2 ? C15 FFF 800 A 1 HETATM 23 C C13 FFF . . . D 3 24.666 76.927 15.489 0.48 24.05 ? C13 FFF 800 A 1 HETATM 24 C C14 FFF . . . D 3 20.32 78.72 15.547 0.48 41.6 ? C14 FFF 800 A 1 HETATM 25 F F1 FFF . . . D 3 20.122 78.603 16.851 0.48 42.94 ? F1 FFF 800 A 1 HETATM 26 F F2 FFF . . . D 3 19.145 78.936 14.98 0.48 48.9 ? F2 FFF 800 A 1 HETATM 27 F F3 FFF . . . D 3 21.113 79.752 15.349 0.48 44.08 ? F3 FFF 800 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #