data_5EB2
#
_model_server_result.job_id            C-4lgE77VJGPsFvVCQwF5Q 
_model_server_result.datetime_utc      '2024-11-08 06:49:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5eb2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    5EB2 
#
_exptl.entry_id    5EB2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.225 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRYPTOPHAN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EB2 
_cell.length_a            120.875 
_cell.length_b            120.875 
_cell.length_c            88.457 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EB2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 40 A CYS 71 1_555 A SG CYS 79 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 114 A CYS 145 1_555 A SG CYS 121 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 B SG CYS 40 B CYS 71 1_555 B SG CYS 79 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 B SG CYS 114 B CYS 145 1_555 B SG CYS 121 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C11 H12 N2 O2' 
_chem_comp.formula_weight    204.225 
_chem_comp.id                TRP 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              TRYPTOPHAN 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA TRP sing 310 n n 
N H TRP sing 311 n n 
N H2 TRP sing 312 n n 
CA C TRP sing 313 n n 
CA CB TRP sing 314 n n 
CA HA TRP sing 315 n n 
C O TRP doub 316 n n 
C OXT TRP sing 317 n n 
CB CG TRP sing 318 n n 
CB HB2 TRP sing 319 n n 
CB HB3 TRP sing 320 n n 
CG CD1 TRP doub 321 n y 
CG CD2 TRP sing 322 n y 
CD1 NE1 TRP sing 323 n y 
CD1 HD1 TRP sing 324 n n 
CD2 CE2 TRP doub 325 n y 
CD2 CE3 TRP sing 326 n y 
NE1 CE2 TRP sing 327 n y 
NE1 HE1 TRP sing 328 n n 
CE2 CZ2 TRP sing 329 n y 
CE3 CZ3 TRP doub 330 n y 
CE3 HE3 TRP sing 331 n n 
CZ2 CH2 TRP doub 332 n y 
CZ2 HZ2 TRP sing 333 n n 
CZ3 CH2 TRP sing 334 n y 
CZ3 HZ3 TRP sing 335 n n 
CH2 HH2 TRP sing 336 n n 
OXT HXT TRP sing 337 n n 
#
_atom_sites.entry_id                     5EB2 
_atom_sites.fract_transf_matrix[1][1]    0.008273 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008273 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011305 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TRP A 1 201 1 TRP TRP . 
D 3 SO4 A 1 202 1 SO4 SO4 . 
E 3 SO4 A 1 203 2 SO4 SO4 . 
F 4 HOH A 1 301 14 HOH HOH . 
F 4 HOH A 2 302 75 HOH HOH . 
F 4 HOH A 3 303 1 HOH HOH . 
F 4 HOH A 4 304 42 HOH HOH . 
F 4 HOH A 5 305 68 HOH HOH . 
F 4 HOH A 6 306 70 HOH HOH . 
F 4 HOH A 7 307 52 HOH HOH . 
F 4 HOH A 8 308 8 HOH HOH . 
F 4 HOH A 9 309 21 HOH HOH . 
F 4 HOH A 10 310 27 HOH HOH . 
F 4 HOH A 11 311 6 HOH HOH . 
F 4 HOH A 12 312 37 HOH HOH . 
F 4 HOH A 13 313 55 HOH HOH . 
F 4 HOH A 14 314 9 HOH HOH . 
F 4 HOH A 15 315 44 HOH HOH . 
F 4 HOH A 16 316 69 HOH HOH . 
F 4 HOH A 17 317 34 HOH HOH . 
F 4 HOH A 18 318 13 HOH HOH . 
F 4 HOH A 19 319 51 HOH HOH . 
F 4 HOH A 20 320 96 HOH HOH . 
F 4 HOH A 21 321 11 HOH HOH . 
F 4 HOH A 22 322 24 HOH HOH . 
F 4 HOH A 23 323 49 HOH HOH . 
F 4 HOH A 24 324 16 HOH HOH . 
F 4 HOH A 25 325 3 HOH HOH . 
F 4 HOH A 26 326 64 HOH HOH . 
F 4 HOH A 27 327 18 HOH HOH . 
F 4 HOH A 28 328 17 HOH HOH . 
F 4 HOH A 29 329 48 HOH HOH . 
F 4 HOH A 30 330 93 HOH HOH . 
F 4 HOH A 31 331 62 HOH HOH . 
F 4 HOH A 32 332 10 HOH HOH . 
F 4 HOH A 33 333 72 HOH HOH . 
F 4 HOH A 34 334 32 HOH HOH . 
F 4 HOH A 35 335 22 HOH HOH . 
F 4 HOH A 36 336 76 HOH HOH . 
F 4 HOH A 37 337 36 HOH HOH . 
F 4 HOH A 38 338 40 HOH HOH . 
F 4 HOH A 39 339 66 HOH HOH . 
F 4 HOH A 40 340 97 HOH HOH . 
F 4 HOH A 41 341 54 HOH HOH . 
F 4 HOH A 42 342 77 HOH HOH . 
F 4 HOH A 43 343 33 HOH HOH . 
F 4 HOH A 44 344 74 HOH HOH . 
F 4 HOH A 45 345 26 HOH HOH . 
F 4 HOH A 46 346 84 HOH HOH . 
F 4 HOH A 47 347 12 HOH HOH . 
F 4 HOH A 48 348 81 HOH HOH . 
F 4 HOH A 49 349 85 HOH HOH . 
F 4 HOH A 50 350 41 HOH HOH . 
F 4 HOH A 51 351 88 HOH HOH . 
F 4 HOH A 52 352 73 HOH HOH . 
F 4 HOH A 53 353 63 HOH HOH . 
F 4 HOH A 54 354 60 HOH HOH . 
F 4 HOH A 55 355 61 HOH HOH . 
F 4 HOH A 56 356 56 HOH HOH . 
F 4 HOH A 57 357 89 HOH HOH . 
F 4 HOH A 58 358 45 HOH HOH . 
F 4 HOH A 59 359 83 HOH HOH . 
F 4 HOH A 60 360 57 HOH HOH . 
G 4 HOH B 1 201 15 HOH HOH . 
G 4 HOH B 2 202 29 HOH HOH . 
G 4 HOH B 3 203 25 HOH HOH . 
G 4 HOH B 4 204 30 HOH HOH . 
G 4 HOH B 5 205 98 HOH HOH . 
G 4 HOH B 6 206 71 HOH HOH . 
G 4 HOH B 7 207 23 HOH HOH . 
G 4 HOH B 8 208 7 HOH HOH . 
G 4 HOH B 9 209 35 HOH HOH . 
G 4 HOH B 10 210 59 HOH HOH . 
G 4 HOH B 11 211 5 HOH HOH . 
G 4 HOH B 12 212 4 HOH HOH . 
G 4 HOH B 13 213 91 HOH HOH . 
G 4 HOH B 14 214 2 HOH HOH . 
G 4 HOH B 15 215 43 HOH HOH . 
G 4 HOH B 16 216 80 HOH HOH . 
G 4 HOH B 17 217 50 HOH HOH . 
G 4 HOH B 18 218 53 HOH HOH . 
G 4 HOH B 19 219 92 HOH HOH . 
G 4 HOH B 20 220 90 HOH HOH . 
G 4 HOH B 21 221 86 HOH HOH . 
G 4 HOH B 22 222 31 HOH HOH . 
G 4 HOH B 23 223 38 HOH HOH . 
G 4 HOH B 24 224 78 HOH HOH . 
G 4 HOH B 25 225 19 HOH HOH . 
G 4 HOH B 26 226 46 HOH HOH . 
G 4 HOH B 27 227 82 HOH HOH . 
G 4 HOH B 28 228 65 HOH HOH . 
G 4 HOH B 29 229 47 HOH HOH . 
G 4 HOH B 30 230 39 HOH HOH . 
G 4 HOH B 31 231 20 HOH HOH . 
G 4 HOH B 32 232 95 HOH HOH . 
G 4 HOH B 33 233 28 HOH HOH . 
G 4 HOH B 34 234 79 HOH HOH . 
G 4 HOH B 35 235 94 HOH HOH . 
G 4 HOH B 36 236 67 HOH HOH . 
G 4 HOH B 37 237 87 HOH HOH . 
G 4 HOH B 38 238 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N TRP . . . C 2 -35.733 -57.274 -6.468 1 78.54 ? N TRP 201 A 1 
HETATM 2 C CA TRP . . . C 2 -36.426 -56.772 -7.652 1 85.74 ? CA TRP 201 A 1 
HETATM 3 C C TRP . . . C 2 -37.889 -57.238 -7.69 1 88.58 ? C TRP 201 A 1 
HETATM 4 O O TRP . . . C 2 -38.253 -58.143 -8.452 1 91.28 ? O TRP 201 A 1 
HETATM 5 C CB TRP . . . C 2 -35.69 -57.212 -8.927 1 80.74 ? CB TRP 201 A 1 
HETATM 6 C CG TRP . . . C 2 -36.093 -56.437 -10.158 1 75.71 ? CG TRP 201 A 1 
HETATM 7 C CD1 TRP . . . C 2 -36.919 -56.861 -11.171 1 70.06 ? CD1 TRP 201 A 1 
HETATM 8 C CD2 TRP . . . C 2 -35.696 -55.097 -10.498 1 61.59 ? CD2 TRP 201 A 1 
HETATM 9 N NE1 TRP . . . C 2 -37.051 -55.867 -12.117 1 63.84 ? NE1 TRP 201 A 1 
HETATM 10 C CE2 TRP . . . C 2 -36.313 -54.776 -11.727 1 60.73 ? CE2 TRP 201 A 1 
HETATM 11 C CE3 TRP . . . C 2 -34.878 -54.14 -9.881 1 50.07 ? CE3 TRP 201 A 1 
HETATM 12 C CZ2 TRP . . . C 2 -36.134 -53.536 -12.354 1 50.77 ? CZ2 TRP 201 A 1 
HETATM 13 C CZ3 TRP . . . C 2 -34.702 -52.9 -10.505 1 42.68 ? CZ3 TRP 201 A 1 
HETATM 14 C CH2 TRP . . . C 2 -35.327 -52.613 -11.729 1 43.17 ? CH2 TRP 201 A 1 
HETATM 15 O OXT TRP . . . C 2 -38.742 -56.717 -6.96 1 81.68 ? OXT TRP 201 A 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           15 
#