data_5EB3
#
_model_server_result.job_id            uey1I3HrF1MT-Whv5-uUUA 
_model_server_result.datetime_utc      '2024-11-26 12:56:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5eb3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5EB3 
#
_exptl.entry_id    5EB3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              169.178 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EB3 
_cell.length_a            120.236 
_cell.length_b            120.236 
_cell.length_c            84.993 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EB3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 40 A CYS 71 1_555 A SG CYS 79 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 114 A CYS 145 1_555 A SG CYS 121 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
disulf ? disulf3 B SG CYS 40 B CYS 71 1_555 B SG CYS 79 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 114 B CYS 145 1_555 B SG CYS 121 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C8 H11 N O3' 
_chem_comp.formula_weight    169.178 
_chem_comp.id                UEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OP4 C5A UEG sing 362 n n 
C5A C5 UEG sing 363 n n 
C5 C6 UEG sing 364 n y 
C5 C4 UEG doub 365 n y 
C6 N1 UEG doub 366 n y 
N1 C2 UEG sing 367 n y 
C2 C3 UEG doub 368 n y 
C2 C2A UEG sing 369 n n 
C3 C4 UEG sing 370 n y 
C3 O3 UEG sing 371 n n 
C4 C4A UEG sing 372 n n 
C4A O4A UEG sing 373 n n 
C4A H4A UEG sing 374 n n 
C4A H4B UEG sing 375 n n 
OP4 HP4 UEG sing 376 n n 
C5A H5A UEG sing 377 n n 
C5A H5B UEG sing 378 n n 
C6 H6 UEG sing 379 n n 
C2A H2A UEG sing 380 n n 
C2A H2B UEG sing 381 n n 
C2A H2C UEG sing 382 n n 
O3 H3 UEG sing 383 n n 
O4A H5 UEG sing 384 n n 
#
_atom_sites.entry_id                     5EB3 
_atom_sites.fract_transf_matrix[1][1]    0.008317 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008317 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011766 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 201 2 SO4 SO4 . 
D 3 UEG A 1 202 1 UEG UEG . 
E 2 SO4 B 1 201 1 SO4 SO4 . 
F 4 HOH A 1 301 58 HOH HOH . 
F 4 HOH A 2 302 98 HOH HOH . 
F 4 HOH A 3 303 41 HOH HOH . 
F 4 HOH A 4 304 32 HOH HOH . 
F 4 HOH A 5 305 111 HOH HOH . 
F 4 HOH A 6 306 96 HOH HOH . 
F 4 HOH A 7 307 27 HOH HOH . 
F 4 HOH A 8 308 149 HOH HOH . 
F 4 HOH A 9 309 21 HOH HOH . 
F 4 HOH A 10 310 23 HOH HOH . 
F 4 HOH A 11 311 63 HOH HOH . 
F 4 HOH A 12 312 1 HOH HOH . 
F 4 HOH A 13 313 93 HOH HOH . 
F 4 HOH A 14 314 30 HOH HOH . 
F 4 HOH A 15 315 6 HOH HOH . 
F 4 HOH A 16 316 106 HOH HOH . 
F 4 HOH A 17 317 79 HOH HOH . 
F 4 HOH A 18 318 20 HOH HOH . 
F 4 HOH A 19 319 36 HOH HOH . 
F 4 HOH A 20 320 35 HOH HOH . 
F 4 HOH A 21 321 85 HOH HOH . 
F 4 HOH A 22 322 109 HOH HOH . 
F 4 HOH A 23 323 3 HOH HOH . 
F 4 HOH A 24 324 88 HOH HOH . 
F 4 HOH A 25 325 97 HOH HOH . 
F 4 HOH A 26 326 49 HOH HOH . 
F 4 HOH A 27 327 47 HOH HOH . 
F 4 HOH A 28 328 10 HOH HOH . 
F 4 HOH A 29 329 4 HOH HOH . 
F 4 HOH A 30 330 13 HOH HOH . 
F 4 HOH A 31 331 94 HOH HOH . 
F 4 HOH A 32 332 134 HOH HOH . 
F 4 HOH A 33 333 55 HOH HOH . 
F 4 HOH A 34 334 8 HOH HOH . 
F 4 HOH A 35 335 160 HOH HOH . 
F 4 HOH A 36 336 19 HOH HOH . 
F 4 HOH A 37 337 57 HOH HOH . 
F 4 HOH A 38 338 119 HOH HOH . 
F 4 HOH A 39 339 167 HOH HOH . 
F 4 HOH A 40 340 95 HOH HOH . 
F 4 HOH A 41 341 56 HOH HOH . 
F 4 HOH A 42 342 24 HOH HOH . 
F 4 HOH A 43 343 26 HOH HOH . 
F 4 HOH A 44 344 44 HOH HOH . 
F 4 HOH A 45 345 113 HOH HOH . 
F 4 HOH A 46 346 48 HOH HOH . 
F 4 HOH A 47 347 62 HOH HOH . 
F 4 HOH A 48 348 82 HOH HOH . 
F 4 HOH A 49 349 64 HOH HOH . 
F 4 HOH A 50 350 127 HOH HOH . 
F 4 HOH A 51 351 91 HOH HOH . 
F 4 HOH A 52 352 37 HOH HOH . 
F 4 HOH A 53 353 110 HOH HOH . 
F 4 HOH A 54 354 78 HOH HOH . 
F 4 HOH A 55 355 102 HOH HOH . 
F 4 HOH A 56 356 74 HOH HOH . 
F 4 HOH A 57 357 117 HOH HOH . 
F 4 HOH A 58 358 43 HOH HOH . 
F 4 HOH A 59 359 143 HOH HOH . 
F 4 HOH A 60 360 72 HOH HOH . 
F 4 HOH A 61 361 123 HOH HOH . 
F 4 HOH A 62 362 193 HOH HOH . 
F 4 HOH A 63 363 17 HOH HOH . 
F 4 HOH A 64 364 121 HOH HOH . 
F 4 HOH A 65 365 133 HOH HOH . 
F 4 HOH A 66 366 87 HOH HOH . 
F 4 HOH A 67 367 192 HOH HOH . 
F 4 HOH A 68 368 188 HOH HOH . 
F 4 HOH A 69 369 183 HOH HOH . 
F 4 HOH A 70 370 70 HOH HOH . 
F 4 HOH A 71 371 118 HOH HOH . 
F 4 HOH A 72 372 128 HOH HOH . 
F 4 HOH A 73 373 138 HOH HOH . 
F 4 HOH A 74 374 86 HOH HOH . 
F 4 HOH A 75 375 125 HOH HOH . 
F 4 HOH A 76 376 92 HOH HOH . 
F 4 HOH A 77 377 29 HOH HOH . 
F 4 HOH A 78 378 115 HOH HOH . 
F 4 HOH A 79 379 159 HOH HOH . 
F 4 HOH A 80 380 54 HOH HOH . 
F 4 HOH A 81 381 173 HOH HOH . 
F 4 HOH A 82 382 107 HOH HOH . 
F 4 HOH A 83 383 101 HOH HOH . 
F 4 HOH A 84 384 144 HOH HOH . 
F 4 HOH A 85 385 71 HOH HOH . 
F 4 HOH A 86 386 153 HOH HOH . 
F 4 HOH A 87 387 60 HOH HOH . 
F 4 HOH A 88 388 190 HOH HOH . 
F 4 HOH A 89 389 103 HOH HOH . 
F 4 HOH A 90 390 80 HOH HOH . 
F 4 HOH A 91 391 75 HOH HOH . 
F 4 HOH A 92 392 177 HOH HOH . 
F 4 HOH A 93 393 189 HOH HOH . 
F 4 HOH A 94 394 182 HOH HOH . 
F 4 HOH A 95 395 139 HOH HOH . 
F 4 HOH A 96 396 104 HOH HOH . 
F 4 HOH A 97 397 81 HOH HOH . 
F 4 HOH A 98 398 186 HOH HOH . 
F 4 HOH A 99 399 178 HOH HOH . 
F 4 HOH A 100 400 112 HOH HOH . 
F 4 HOH A 101 401 131 HOH HOH . 
F 4 HOH A 102 402 179 HOH HOH . 
F 4 HOH A 103 403 172 HOH HOH . 
F 4 HOH A 104 404 154 HOH HOH . 
F 4 HOH A 105 405 176 HOH HOH . 
F 4 HOH A 106 406 169 HOH HOH . 
F 4 HOH A 107 407 147 HOH HOH . 
F 4 HOH A 108 408 122 HOH HOH . 
F 4 HOH A 109 409 161 HOH HOH . 
G 4 HOH B 1 301 18 HOH HOH . 
G 4 HOH B 2 302 150 HOH HOH . 
G 4 HOH B 3 303 180 HOH HOH . 
G 4 HOH B 4 304 33 HOH HOH . 
G 4 HOH B 5 305 15 HOH HOH . 
G 4 HOH B 6 306 34 HOH HOH . 
G 4 HOH B 7 307 132 HOH HOH . 
G 4 HOH B 8 308 5 HOH HOH . 
G 4 HOH B 9 309 69 HOH HOH . 
G 4 HOH B 10 310 16 HOH HOH . 
G 4 HOH B 11 311 11 HOH HOH . 
G 4 HOH B 12 312 184 HOH HOH . 
G 4 HOH B 13 313 168 HOH HOH . 
G 4 HOH B 14 314 40 HOH HOH . 
G 4 HOH B 15 315 7 HOH HOH . 
G 4 HOH B 16 316 66 HOH HOH . 
G 4 HOH B 17 317 65 HOH HOH . 
G 4 HOH B 18 318 89 HOH HOH . 
G 4 HOH B 19 319 136 HOH HOH . 
G 4 HOH B 20 320 2 HOH HOH . 
G 4 HOH B 21 321 22 HOH HOH . 
G 4 HOH B 22 322 108 HOH HOH . 
G 4 HOH B 23 323 51 HOH HOH . 
G 4 HOH B 24 324 157 HOH HOH . 
G 4 HOH B 25 325 158 HOH HOH . 
G 4 HOH B 26 326 12 HOH HOH . 
G 4 HOH B 27 327 126 HOH HOH . 
G 4 HOH B 28 328 120 HOH HOH . 
G 4 HOH B 29 329 99 HOH HOH . 
G 4 HOH B 30 330 83 HOH HOH . 
G 4 HOH B 31 331 53 HOH HOH . 
G 4 HOH B 32 332 14 HOH HOH . 
G 4 HOH B 33 333 151 HOH HOH . 
G 4 HOH B 34 334 191 HOH HOH . 
G 4 HOH B 35 335 181 HOH HOH . 
G 4 HOH B 36 336 90 HOH HOH . 
G 4 HOH B 37 337 28 HOH HOH . 
G 4 HOH B 38 338 39 HOH HOH . 
G 4 HOH B 39 339 31 HOH HOH . 
G 4 HOH B 40 340 152 HOH HOH . 
G 4 HOH B 41 341 38 HOH HOH . 
G 4 HOH B 42 342 84 HOH HOH . 
G 4 HOH B 43 343 68 HOH HOH . 
G 4 HOH B 44 344 45 HOH HOH . 
G 4 HOH B 45 345 50 HOH HOH . 
G 4 HOH B 46 346 156 HOH HOH . 
G 4 HOH B 47 347 105 HOH HOH . 
G 4 HOH B 48 348 73 HOH HOH . 
G 4 HOH B 49 349 77 HOH HOH . 
G 4 HOH B 50 350 165 HOH HOH . 
G 4 HOH B 51 351 9 HOH HOH . 
G 4 HOH B 52 352 137 HOH HOH . 
G 4 HOH B 53 353 130 HOH HOH . 
G 4 HOH B 54 354 59 HOH HOH . 
G 4 HOH B 55 355 42 HOH HOH . 
G 4 HOH B 56 356 61 HOH HOH . 
G 4 HOH B 57 357 114 HOH HOH . 
G 4 HOH B 58 358 145 HOH HOH . 
G 4 HOH B 59 359 76 HOH HOH . 
G 4 HOH B 60 360 100 HOH HOH . 
G 4 HOH B 61 361 25 HOH HOH . 
G 4 HOH B 62 362 116 HOH HOH . 
G 4 HOH B 63 363 146 HOH HOH . 
G 4 HOH B 64 364 46 HOH HOH . 
G 4 HOH B 65 365 162 HOH HOH . 
G 4 HOH B 66 366 155 HOH HOH . 
G 4 HOH B 67 367 166 HOH HOH . 
G 4 HOH B 68 368 67 HOH HOH . 
G 4 HOH B 69 369 148 HOH HOH . 
G 4 HOH B 70 370 163 HOH HOH . 
G 4 HOH B 71 371 135 HOH HOH . 
G 4 HOH B 72 372 171 HOH HOH . 
G 4 HOH B 73 373 187 HOH HOH . 
G 4 HOH B 74 374 52 HOH HOH . 
G 4 HOH B 75 375 142 HOH HOH . 
G 4 HOH B 76 376 175 HOH HOH . 
G 4 HOH B 77 377 140 HOH HOH . 
G 4 HOH B 78 378 170 HOH HOH . 
G 4 HOH B 79 379 174 HOH HOH . 
G 4 HOH B 80 380 141 HOH HOH . 
G 4 HOH B 81 381 124 HOH HOH . 
G 4 HOH B 82 382 185 HOH HOH . 
G 4 HOH B 83 383 129 HOH HOH . 
G 4 HOH B 84 384 164 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OP4 UEG . . . D 3 25.501 4.235 34.405 1 47.74 ? OP4 UEG 202 A 1 
HETATM 2 C C5A UEG . . . D 3 24.657 4.019 33.299 1 47.28 ? C5A UEG 202 A 1 
HETATM 3 C C5 UEG . . . D 3 24.843 5.223 32.422 1 43.55 ? C5 UEG 202 A 1 
HETATM 4 C C6 UEG . . . D 3 25.74 6.18 32.869 1 43.58 ? C6 UEG 202 A 1 
HETATM 5 N N1 UEG . . . D 3 25.964 7.295 32.136 1 42.65 ? N1 UEG 202 A 1 
HETATM 6 C C2 UEG . . . D 3 25.299 7.463 30.962 1 40.96 ? C2 UEG 202 A 1 
HETATM 7 C C3 UEG . . . D 3 24.402 6.51 30.507 1 42.33 ? C3 UEG 202 A 1 
HETATM 8 C C4 UEG . . . D 3 24.173 5.377 31.239 1 43.54 ? C4 UEG 202 A 1 
HETATM 9 C C4A UEG . . . D 3 23.176 4.346 30.732 1 42.74 ? C4A UEG 202 A 1 
HETATM 10 O O4A UEG . . . D 3 23.767 3.078 30.551 1 45.61 ? O4A UEG 202 A 1 
HETATM 11 O O3 UEG . . . D 3 23.731 6.71 29.288 1 48.88 ? O3 UEG 202 A 1 
HETATM 12 C C2A UEG . . . D 3 25.558 8.712 30.156 1 40.14 ? C2A UEG 202 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#