data_5EBV # _model_server_result.job_id UtIf-9XqyPCwpgDdL90DPw _model_server_result.datetime_utc '2024-10-19 01:46:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ebv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5EBV # _exptl.entry_id 5EBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EBV _cell.length_a 175.168 _cell.length_b 175.168 _cell.length_c 122.32 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 122.32 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 122.32 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 122.32 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 126 n y N1A C6A COA doub 127 n y C2A N3A COA doub 128 n y C2A H2A COA sing 129 n n N3A C4A COA sing 130 n y C4A C5A COA doub 131 n y C4A N9A COA sing 132 n y C5A C6A COA sing 133 n y C5A N7A COA sing 134 n y C6A N6A COA sing 135 n n N6A H61A COA sing 136 n n N6A H62A COA sing 137 n n N7A C8A COA doub 138 n y C8A N9A COA sing 139 n y C8A H8A COA sing 140 n n N9A C1B COA sing 141 n n C1B C2B COA sing 142 n n C1B O4B COA sing 143 n n C1B H1B COA sing 144 n n C2B O2B COA sing 145 n n C2B C3B COA sing 146 n n C2B H2B COA sing 147 n n O2B HO2A COA sing 148 n n C3B O3B COA sing 149 n n C3B C4B COA sing 150 n n C3B H3B COA sing 151 n n O3B P3B COA sing 152 n n P3B O7A COA doub 153 n n P3B O8A COA sing 154 n n P3B O9A COA sing 155 n n O8A HOA8 COA sing 156 n n O9A HOA9 COA sing 157 n n C4B O4B COA sing 158 n n C4B C5B COA sing 159 n n C4B H4B COA sing 160 n n C5B O5B COA sing 161 n n C5B H51A COA sing 162 n n C5B H52A COA sing 163 n n O5B P1A COA sing 164 n n P1A O1A COA doub 165 n n P1A O2A COA sing 166 n n P1A O3A COA sing 167 n n O2A HOA2 COA sing 168 n n O3A P2A COA sing 169 n n P2A O4A COA doub 170 n n P2A O5A COA sing 171 n n P2A O6A COA sing 172 n n O5A HOA5 COA sing 173 n n O6A CCP COA sing 174 n n CBP CCP COA sing 175 n n CBP CDP COA sing 176 n n CBP CEP COA sing 177 n n CBP CAP COA sing 178 n n CCP H121 COA sing 179 n n CCP H122 COA sing 180 n n CDP H131 COA sing 181 n n CDP H132 COA sing 182 n n CDP H133 COA sing 183 n n CEP H141 COA sing 184 n n CEP H142 COA sing 185 n n CEP H143 COA sing 186 n n CAP OAP COA sing 187 n n CAP C9P COA sing 188 n n CAP H10 COA sing 189 n n OAP HO1 COA sing 190 n n C9P O9P COA doub 191 n n C9P N8P COA sing 192 n n N8P C7P COA sing 193 n n N8P HN8 COA sing 194 n n C7P C6P COA sing 195 n n C7P H71 COA sing 196 n n C7P H72 COA sing 197 n n C6P C5P COA sing 198 n n C6P H61 COA sing 199 n n C6P H62 COA sing 200 n n C5P O5P COA doub 201 n n C5P N4P COA sing 202 n n N4P C3P COA sing 203 n n N4P HN4 COA sing 204 n n C3P C2P COA sing 205 n n C3P H31 COA sing 206 n n C3P H32 COA sing 207 n n C2P S1P COA sing 208 n n C2P H21 COA sing 209 n n C2P H22 COA sing 210 n n S1P HS1 COA sing 211 n n # _atom_sites.entry_id 5EBV _atom_sites.fract_transf_matrix[1][1] 0.005709 _atom_sites.fract_transf_matrix[1][2] 0.003296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008175 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 500 COA COA . C 3 5LR A 1 502 505 5LR AA1 . D 4 CL A 1 503 507 CL CL . E 5 HOH A 1 601 303 HOH HOH . E 5 HOH A 2 602 230 HOH HOH . E 5 HOH A 3 603 191 HOH HOH . E 5 HOH A 4 604 90 HOH HOH . E 5 HOH A 5 605 253 HOH HOH . E 5 HOH A 6 606 138 HOH HOH . E 5 HOH A 7 607 128 HOH HOH . E 5 HOH A 8 608 357 HOH HOH . E 5 HOH A 9 609 12 HOH HOH . E 5 HOH A 10 610 226 HOH HOH . E 5 HOH A 11 611 51 HOH HOH . E 5 HOH A 12 612 18 HOH HOH . E 5 HOH A 13 613 50 HOH HOH . E 5 HOH A 14 614 60 HOH HOH . E 5 HOH A 15 615 151 HOH HOH . E 5 HOH A 16 616 115 HOH HOH . E 5 HOH A 17 617 137 HOH HOH . E 5 HOH A 18 618 256 HOH HOH . E 5 HOH A 19 619 239 HOH HOH . E 5 HOH A 20 620 26 HOH HOH . E 5 HOH A 21 621 19 HOH HOH . E 5 HOH A 22 622 39 HOH HOH . E 5 HOH A 23 623 23 HOH HOH . E 5 HOH A 24 624 72 HOH HOH . E 5 HOH A 25 625 145 HOH HOH . E 5 HOH A 26 626 195 HOH HOH . E 5 HOH A 27 627 11 HOH HOH . E 5 HOH A 28 628 147 HOH HOH . E 5 HOH A 29 629 109 HOH HOH . E 5 HOH A 30 630 136 HOH HOH . E 5 HOH A 31 631 219 HOH HOH . E 5 HOH A 32 632 119 HOH HOH . E 5 HOH A 33 633 248 HOH HOH . E 5 HOH A 34 634 134 HOH HOH . E 5 HOH A 35 635 116 HOH HOH . E 5 HOH A 36 636 58 HOH HOH . E 5 HOH A 37 637 276 HOH HOH . E 5 HOH A 38 638 5 HOH HOH . E 5 HOH A 39 639 14 HOH HOH . E 5 HOH A 40 640 21 HOH HOH . E 5 HOH A 41 641 240 HOH HOH . E 5 HOH A 42 642 165 HOH HOH . E 5 HOH A 43 643 48 HOH HOH . E 5 HOH A 44 644 20 HOH HOH . E 5 HOH A 45 645 131 HOH HOH . E 5 HOH A 46 646 266 HOH HOH . E 5 HOH A 47 647 83 HOH HOH . E 5 HOH A 48 648 13 HOH HOH . E 5 HOH A 49 649 98 HOH HOH . E 5 HOH A 50 650 9 HOH HOH . E 5 HOH A 51 651 67 HOH HOH . E 5 HOH A 52 652 70 HOH HOH . E 5 HOH A 53 653 59 HOH HOH . E 5 HOH A 54 654 224 HOH HOH . E 5 HOH A 55 655 101 HOH HOH . E 5 HOH A 56 656 254 HOH HOH . E 5 HOH A 57 657 87 HOH HOH . E 5 HOH A 58 658 220 HOH HOH . E 5 HOH A 59 659 36 HOH HOH . E 5 HOH A 60 660 326 HOH HOH . E 5 HOH A 61 661 301 HOH HOH . E 5 HOH A 62 662 63 HOH HOH . E 5 HOH A 63 663 114 HOH HOH . E 5 HOH A 64 664 126 HOH HOH . E 5 HOH A 65 665 1 HOH HOH . E 5 HOH A 66 666 64 HOH HOH . E 5 HOH A 67 667 139 HOH HOH . E 5 HOH A 68 668 91 HOH HOH . E 5 HOH A 69 669 68 HOH HOH . E 5 HOH A 70 670 85 HOH HOH . E 5 HOH A 71 671 148 HOH HOH . E 5 HOH A 72 672 24 HOH HOH . E 5 HOH A 73 673 107 HOH HOH . E 5 HOH A 74 674 49 HOH HOH . E 5 HOH A 75 675 149 HOH HOH . E 5 HOH A 76 676 6 HOH HOH . E 5 HOH A 77 677 25 HOH HOH . E 5 HOH A 78 678 122 HOH HOH . E 5 HOH A 79 679 209 HOH HOH . E 5 HOH A 80 680 97 HOH HOH . E 5 HOH A 81 681 304 HOH HOH . E 5 HOH A 82 682 78 HOH HOH . E 5 HOH A 83 683 46 HOH HOH . E 5 HOH A 84 684 84 HOH HOH . E 5 HOH A 85 685 212 HOH HOH . E 5 HOH A 86 686 34 HOH HOH . E 5 HOH A 87 687 295 HOH HOH . E 5 HOH A 88 688 86 HOH HOH . E 5 HOH A 89 689 96 HOH HOH . E 5 HOH A 90 690 45 HOH HOH . E 5 HOH A 91 691 228 HOH HOH . E 5 HOH A 92 692 42 HOH HOH . E 5 HOH A 93 693 204 HOH HOH . E 5 HOH A 94 694 225 HOH HOH . E 5 HOH A 95 695 302 HOH HOH . E 5 HOH A 96 696 32 HOH HOH . E 5 HOH A 97 697 160 HOH HOH . E 5 HOH A 98 698 56 HOH HOH . E 5 HOH A 99 699 233 HOH HOH . E 5 HOH A 100 700 162 HOH HOH . E 5 HOH A 101 701 125 HOH HOH . E 5 HOH A 102 702 192 HOH HOH . E 5 HOH A 103 703 135 HOH HOH . E 5 HOH A 104 704 104 HOH HOH . E 5 HOH A 105 705 223 HOH HOH . E 5 HOH A 106 706 120 HOH HOH . E 5 HOH A 107 707 155 HOH HOH . E 5 HOH A 108 708 210 HOH HOH . E 5 HOH A 109 709 99 HOH HOH . E 5 HOH A 110 710 267 HOH HOH . E 5 HOH A 111 711 251 HOH HOH . E 5 HOH A 112 712 259 HOH HOH . E 5 HOH A 113 713 3 HOH HOH . E 5 HOH A 114 714 43 HOH HOH . E 5 HOH A 115 715 113 HOH HOH . E 5 HOH A 116 716 217 HOH HOH . E 5 HOH A 117 717 15 HOH HOH . E 5 HOH A 118 718 500 HOH HOH . E 5 HOH A 119 719 341 HOH HOH . E 5 HOH A 120 720 222 HOH HOH . E 5 HOH A 121 721 133 HOH HOH . E 5 HOH A 122 722 211 HOH HOH . E 5 HOH A 123 723 214 HOH HOH . E 5 HOH A 124 724 41 HOH HOH . E 5 HOH A 125 725 174 HOH HOH . E 5 HOH A 126 726 175 HOH HOH . E 5 HOH A 127 727 102 HOH HOH . E 5 HOH A 128 728 171 HOH HOH . E 5 HOH A 129 729 250 HOH HOH . E 5 HOH A 130 730 108 HOH HOH . E 5 HOH A 131 731 318 HOH HOH . E 5 HOH A 132 732 142 HOH HOH . E 5 HOH A 133 733 221 HOH HOH . E 5 HOH A 134 734 75 HOH HOH . E 5 HOH A 135 735 316 HOH HOH . E 5 HOH A 136 736 77 HOH HOH . E 5 HOH A 137 737 176 HOH HOH . E 5 HOH A 138 738 168 HOH HOH . E 5 HOH A 139 739 274 HOH HOH . E 5 HOH A 140 740 82 HOH HOH . E 5 HOH A 141 741 140 HOH HOH . E 5 HOH A 142 742 283 HOH HOH . E 5 HOH A 143 743 80 HOH HOH . E 5 HOH A 144 744 275 HOH HOH . E 5 HOH A 145 745 156 HOH HOH . E 5 HOH A 146 746 16 HOH HOH . E 5 HOH A 147 747 183 HOH HOH . E 5 HOH A 148 748 268 HOH HOH . E 5 HOH A 149 749 313 HOH HOH . E 5 HOH A 150 750 143 HOH HOH . E 5 HOH A 151 751 169 HOH HOH . E 5 HOH A 152 752 247 HOH HOH . E 5 HOH A 153 753 100 HOH HOH . E 5 HOH A 154 754 179 HOH HOH . E 5 HOH A 155 755 40 HOH HOH . E 5 HOH A 156 756 288 HOH HOH . E 5 HOH A 157 757 199 HOH HOH . E 5 HOH A 158 758 285 HOH HOH . E 5 HOH A 159 759 344 HOH HOH . E 5 HOH A 160 760 74 HOH HOH . E 5 HOH A 161 761 166 HOH HOH . E 5 HOH A 162 762 501 HOH HOH . E 5 HOH A 163 763 144 HOH HOH . E 5 HOH A 164 764 95 HOH HOH . E 5 HOH A 165 765 232 HOH HOH . E 5 HOH A 166 766 153 HOH HOH . E 5 HOH A 167 767 130 HOH HOH . E 5 HOH A 168 768 27 HOH HOH . E 5 HOH A 169 769 111 HOH HOH . E 5 HOH A 170 770 31 HOH HOH . E 5 HOH A 171 771 17 HOH HOH . E 5 HOH A 172 772 229 HOH HOH . E 5 HOH A 173 773 218 HOH HOH . E 5 HOH A 174 774 208 HOH HOH . E 5 HOH A 175 775 76 HOH HOH . E 5 HOH A 176 776 170 HOH HOH . E 5 HOH A 177 777 182 HOH HOH . E 5 HOH A 178 778 186 HOH HOH . E 5 HOH A 179 779 227 HOH HOH . E 5 HOH A 180 780 198 HOH HOH . E 5 HOH A 181 781 346 HOH HOH . E 5 HOH A 182 782 206 HOH HOH . E 5 HOH A 183 783 358 HOH HOH . E 5 HOH A 184 784 350 HOH HOH . E 5 HOH A 185 785 356 HOH HOH . E 5 HOH A 186 786 53 HOH HOH . E 5 HOH A 187 787 332 HOH HOH . E 5 HOH A 188 788 298 HOH HOH . E 5 HOH A 189 789 180 HOH HOH . E 5 HOH A 190 790 348 HOH HOH . E 5 HOH A 191 791 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5B COA . . . B 2 22.853 -28.543 50.073 1 88.17 ? C5B COA 501 A 1 HETATM 2 O O5B COA . . . B 2 21.52 -28.983 49.804 1 88.87 ? O5B COA 501 A 1 HETATM 3 P P1A COA . . . B 2 20.917 -29.068 48.303 1 86.15 ? P1A COA 501 A 1 HETATM 4 O O1A COA . . . B 2 22.085 -28.982 47.348 1 75.14 ? O1A COA 501 A 1 HETATM 5 O O2A COA . . . B 2 19.974 -30.254 48.258 1 78.84 ? O2A COA 501 A 1 HETATM 6 O O3A COA . . . B 2 20.04 -27.705 48.191 1 88.08 ? O3A COA 501 A 1 HETATM 7 P P2A COA . . . B 2 18.77 -27.515 47.196 1 88.59 ? P2A COA 501 A 1 HETATM 8 O O4A COA . . . B 2 19.292 -27.656 45.791 1 79.87 ? O4A COA 501 A 1 HETATM 9 O O5A COA . . . B 2 17.673 -28.447 47.654 1 89.01 ? O5A COA 501 A 1 HETATM 10 O O6A COA . . . B 2 18.226 -26.001 47.476 1 88.88 ? O6A COA 501 A 1 HETATM 11 C CBP COA . . . B 2 18.345 -23.55 47.67 1 92.32 ? CBP COA 501 A 1 HETATM 12 C CCP COA . . . B 2 18.742 -24.806 46.863 1 91.66 ? CCP COA 501 A 1 HETATM 13 C CDP COA . . . B 2 19.334 -22.894 48.636 1 91.36 ? CDP COA 501 A 1 HETATM 14 C CEP COA . . . B 2 16.903 -23.064 47.643 1 92.68 ? CEP COA 501 A 1 HETATM 15 C CAP COA . . . B 2 18.807 -22.607 46.476 1 94.02 ? CAP COA 501 A 1 HETATM 16 O OAP COA . . . B 2 18.008 -22.758 45.285 1 95.87 ? OAP COA 501 A 1 HETATM 17 C C9P COA . . . B 2 18.853 -21.102 46.708 1 94.35 ? C9P COA 501 A 1 HETATM 18 O O9P COA . . . B 2 17.835 -20.442 46.849 1 96.87 ? O9P COA 501 A 1 HETATM 19 N N8P COA . . . B 2 20.052 -20.518 46.716 1 91.83 ? N8P COA 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 19 #