data_5EBV # _model_server_result.job_id Kaq-EDGg4aLik9BtGvsmdw _model_server_result.datetime_utc '2024-10-19 01:38:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ebv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5EBV # _exptl.entry_id 5EBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.963 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-chlorophenyl)-~{N}-[3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)propyl]-4-methyl-1,1-bis(oxidanylidene)-1,2-thiazol-3-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EBV _cell.length_a 175.168 _cell.length_b 175.168 _cell.length_c 122.32 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 122.32 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 122.32 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 122.32 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H24 Cl N3 O2 S' _chem_comp.formula_weight 429.963 _chem_comp.id 5LR _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-chlorophenyl)-~{N}-[3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)propyl]-4-methyl-1,1-bis(oxidanylidene)-1,2-thiazol-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 S 5LR sing 1 n n C4 C3 5LR sing 2 n n C4 C5 5LR doub 3 n n C7 N2 5LR doub 4 n n C7 C5 5LR sing 5 n n C7 N 5LR sing 6 n n C8 N 5LR sing 7 n n C8 C9 5LR sing 8 n n C11 C12 5LR sing 9 n n C11 N1 5LR sing 10 n n C12 C13 5LR doub 11 n y C12 C17 5LR sing 12 n y C15 C14 5LR doub 13 n y C15 C16 5LR sing 14 n y C18 C19 5LR sing 15 n n C18 C13 5LR sing 16 n n C19 N1 5LR sing 17 n n O1 S 5LR doub 18 n n S O 5LR doub 19 n n S N2 5LR sing 20 n n C3 C2 5LR doub 21 n y C3 C20 5LR sing 22 n y C2 C1 5LR sing 23 n y C1 C 5LR doub 24 n y C20 C21 5LR doub 25 n y C21 C 5LR sing 26 n y C CL 5LR sing 27 n n C5 C6 5LR sing 28 n n C9 C10 5LR sing 29 n n C10 N1 5LR sing 30 n n C13 C14 5LR sing 31 n y C16 C17 5LR doub 32 n y C8 H1 5LR sing 33 n n C8 H2 5LR sing 34 n n C11 H3 5LR sing 35 n n C11 H4 5LR sing 36 n n C15 H5 5LR sing 37 n n C18 H6 5LR sing 38 n n C18 H7 5LR sing 39 n n C19 H8 5LR sing 40 n n C19 H9 5LR sing 41 n n C2 H12 5LR sing 42 n n C1 H13 5LR sing 43 n n C20 H14 5LR sing 44 n n C21 H15 5LR sing 45 n n C6 H17 5LR sing 46 n n C6 H18 5LR sing 47 n n C6 H19 5LR sing 48 n n N H20 5LR sing 49 n n C9 H22 5LR sing 50 n n C9 H23 5LR sing 51 n n C10 H24 5LR sing 52 n n C10 H25 5LR sing 53 n n C14 H27 5LR sing 54 n n C16 H28 5LR sing 55 n n C17 H29 5LR sing 56 n n # _atom_sites.entry_id 5EBV _atom_sites.fract_transf_matrix[1][1] 0.005709 _atom_sites.fract_transf_matrix[1][2] 0.003296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008175 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 500 COA COA . C 3 5LR A 1 502 505 5LR AA1 . D 4 CL A 1 503 507 CL CL . E 5 HOH A 1 601 303 HOH HOH . E 5 HOH A 2 602 230 HOH HOH . E 5 HOH A 3 603 191 HOH HOH . E 5 HOH A 4 604 90 HOH HOH . E 5 HOH A 5 605 253 HOH HOH . E 5 HOH A 6 606 138 HOH HOH . E 5 HOH A 7 607 128 HOH HOH . E 5 HOH A 8 608 357 HOH HOH . E 5 HOH A 9 609 12 HOH HOH . E 5 HOH A 10 610 226 HOH HOH . E 5 HOH A 11 611 51 HOH HOH . E 5 HOH A 12 612 18 HOH HOH . E 5 HOH A 13 613 50 HOH HOH . E 5 HOH A 14 614 60 HOH HOH . E 5 HOH A 15 615 151 HOH HOH . E 5 HOH A 16 616 115 HOH HOH . E 5 HOH A 17 617 137 HOH HOH . E 5 HOH A 18 618 256 HOH HOH . E 5 HOH A 19 619 239 HOH HOH . E 5 HOH A 20 620 26 HOH HOH . E 5 HOH A 21 621 19 HOH HOH . E 5 HOH A 22 622 39 HOH HOH . E 5 HOH A 23 623 23 HOH HOH . E 5 HOH A 24 624 72 HOH HOH . E 5 HOH A 25 625 145 HOH HOH . E 5 HOH A 26 626 195 HOH HOH . E 5 HOH A 27 627 11 HOH HOH . E 5 HOH A 28 628 147 HOH HOH . E 5 HOH A 29 629 109 HOH HOH . E 5 HOH A 30 630 136 HOH HOH . E 5 HOH A 31 631 219 HOH HOH . E 5 HOH A 32 632 119 HOH HOH . E 5 HOH A 33 633 248 HOH HOH . E 5 HOH A 34 634 134 HOH HOH . E 5 HOH A 35 635 116 HOH HOH . E 5 HOH A 36 636 58 HOH HOH . E 5 HOH A 37 637 276 HOH HOH . E 5 HOH A 38 638 5 HOH HOH . E 5 HOH A 39 639 14 HOH HOH . E 5 HOH A 40 640 21 HOH HOH . E 5 HOH A 41 641 240 HOH HOH . E 5 HOH A 42 642 165 HOH HOH . E 5 HOH A 43 643 48 HOH HOH . E 5 HOH A 44 644 20 HOH HOH . E 5 HOH A 45 645 131 HOH HOH . E 5 HOH A 46 646 266 HOH HOH . E 5 HOH A 47 647 83 HOH HOH . E 5 HOH A 48 648 13 HOH HOH . E 5 HOH A 49 649 98 HOH HOH . E 5 HOH A 50 650 9 HOH HOH . E 5 HOH A 51 651 67 HOH HOH . E 5 HOH A 52 652 70 HOH HOH . E 5 HOH A 53 653 59 HOH HOH . E 5 HOH A 54 654 224 HOH HOH . E 5 HOH A 55 655 101 HOH HOH . E 5 HOH A 56 656 254 HOH HOH . E 5 HOH A 57 657 87 HOH HOH . E 5 HOH A 58 658 220 HOH HOH . E 5 HOH A 59 659 36 HOH HOH . E 5 HOH A 60 660 326 HOH HOH . E 5 HOH A 61 661 301 HOH HOH . E 5 HOH A 62 662 63 HOH HOH . E 5 HOH A 63 663 114 HOH HOH . E 5 HOH A 64 664 126 HOH HOH . E 5 HOH A 65 665 1 HOH HOH . E 5 HOH A 66 666 64 HOH HOH . E 5 HOH A 67 667 139 HOH HOH . E 5 HOH A 68 668 91 HOH HOH . E 5 HOH A 69 669 68 HOH HOH . E 5 HOH A 70 670 85 HOH HOH . E 5 HOH A 71 671 148 HOH HOH . E 5 HOH A 72 672 24 HOH HOH . E 5 HOH A 73 673 107 HOH HOH . E 5 HOH A 74 674 49 HOH HOH . E 5 HOH A 75 675 149 HOH HOH . E 5 HOH A 76 676 6 HOH HOH . E 5 HOH A 77 677 25 HOH HOH . E 5 HOH A 78 678 122 HOH HOH . E 5 HOH A 79 679 209 HOH HOH . E 5 HOH A 80 680 97 HOH HOH . E 5 HOH A 81 681 304 HOH HOH . E 5 HOH A 82 682 78 HOH HOH . E 5 HOH A 83 683 46 HOH HOH . E 5 HOH A 84 684 84 HOH HOH . E 5 HOH A 85 685 212 HOH HOH . E 5 HOH A 86 686 34 HOH HOH . E 5 HOH A 87 687 295 HOH HOH . E 5 HOH A 88 688 86 HOH HOH . E 5 HOH A 89 689 96 HOH HOH . E 5 HOH A 90 690 45 HOH HOH . E 5 HOH A 91 691 228 HOH HOH . E 5 HOH A 92 692 42 HOH HOH . E 5 HOH A 93 693 204 HOH HOH . E 5 HOH A 94 694 225 HOH HOH . E 5 HOH A 95 695 302 HOH HOH . E 5 HOH A 96 696 32 HOH HOH . E 5 HOH A 97 697 160 HOH HOH . E 5 HOH A 98 698 56 HOH HOH . E 5 HOH A 99 699 233 HOH HOH . E 5 HOH A 100 700 162 HOH HOH . E 5 HOH A 101 701 125 HOH HOH . E 5 HOH A 102 702 192 HOH HOH . E 5 HOH A 103 703 135 HOH HOH . E 5 HOH A 104 704 104 HOH HOH . E 5 HOH A 105 705 223 HOH HOH . E 5 HOH A 106 706 120 HOH HOH . E 5 HOH A 107 707 155 HOH HOH . E 5 HOH A 108 708 210 HOH HOH . E 5 HOH A 109 709 99 HOH HOH . E 5 HOH A 110 710 267 HOH HOH . E 5 HOH A 111 711 251 HOH HOH . E 5 HOH A 112 712 259 HOH HOH . E 5 HOH A 113 713 3 HOH HOH . E 5 HOH A 114 714 43 HOH HOH . E 5 HOH A 115 715 113 HOH HOH . E 5 HOH A 116 716 217 HOH HOH . E 5 HOH A 117 717 15 HOH HOH . E 5 HOH A 118 718 500 HOH HOH . E 5 HOH A 119 719 341 HOH HOH . E 5 HOH A 120 720 222 HOH HOH . E 5 HOH A 121 721 133 HOH HOH . E 5 HOH A 122 722 211 HOH HOH . E 5 HOH A 123 723 214 HOH HOH . E 5 HOH A 124 724 41 HOH HOH . E 5 HOH A 125 725 174 HOH HOH . E 5 HOH A 126 726 175 HOH HOH . E 5 HOH A 127 727 102 HOH HOH . E 5 HOH A 128 728 171 HOH HOH . E 5 HOH A 129 729 250 HOH HOH . E 5 HOH A 130 730 108 HOH HOH . E 5 HOH A 131 731 318 HOH HOH . E 5 HOH A 132 732 142 HOH HOH . E 5 HOH A 133 733 221 HOH HOH . E 5 HOH A 134 734 75 HOH HOH . E 5 HOH A 135 735 316 HOH HOH . E 5 HOH A 136 736 77 HOH HOH . E 5 HOH A 137 737 176 HOH HOH . E 5 HOH A 138 738 168 HOH HOH . E 5 HOH A 139 739 274 HOH HOH . E 5 HOH A 140 740 82 HOH HOH . E 5 HOH A 141 741 140 HOH HOH . E 5 HOH A 142 742 283 HOH HOH . E 5 HOH A 143 743 80 HOH HOH . E 5 HOH A 144 744 275 HOH HOH . E 5 HOH A 145 745 156 HOH HOH . E 5 HOH A 146 746 16 HOH HOH . E 5 HOH A 147 747 183 HOH HOH . E 5 HOH A 148 748 268 HOH HOH . E 5 HOH A 149 749 313 HOH HOH . E 5 HOH A 150 750 143 HOH HOH . E 5 HOH A 151 751 169 HOH HOH . E 5 HOH A 152 752 247 HOH HOH . E 5 HOH A 153 753 100 HOH HOH . E 5 HOH A 154 754 179 HOH HOH . E 5 HOH A 155 755 40 HOH HOH . E 5 HOH A 156 756 288 HOH HOH . E 5 HOH A 157 757 199 HOH HOH . E 5 HOH A 158 758 285 HOH HOH . E 5 HOH A 159 759 344 HOH HOH . E 5 HOH A 160 760 74 HOH HOH . E 5 HOH A 161 761 166 HOH HOH . E 5 HOH A 162 762 501 HOH HOH . E 5 HOH A 163 763 144 HOH HOH . E 5 HOH A 164 764 95 HOH HOH . E 5 HOH A 165 765 232 HOH HOH . E 5 HOH A 166 766 153 HOH HOH . E 5 HOH A 167 767 130 HOH HOH . E 5 HOH A 168 768 27 HOH HOH . E 5 HOH A 169 769 111 HOH HOH . E 5 HOH A 170 770 31 HOH HOH . E 5 HOH A 171 771 17 HOH HOH . E 5 HOH A 172 772 229 HOH HOH . E 5 HOH A 173 773 218 HOH HOH . E 5 HOH A 174 774 208 HOH HOH . E 5 HOH A 175 775 76 HOH HOH . E 5 HOH A 176 776 170 HOH HOH . E 5 HOH A 177 777 182 HOH HOH . E 5 HOH A 178 778 186 HOH HOH . E 5 HOH A 179 779 227 HOH HOH . E 5 HOH A 180 780 198 HOH HOH . E 5 HOH A 181 781 346 HOH HOH . E 5 HOH A 182 782 206 HOH HOH . E 5 HOH A 183 783 358 HOH HOH . E 5 HOH A 184 784 350 HOH HOH . E 5 HOH A 185 785 356 HOH HOH . E 5 HOH A 186 786 53 HOH HOH . E 5 HOH A 187 787 332 HOH HOH . E 5 HOH A 188 788 298 HOH HOH . E 5 HOH A 189 789 180 HOH HOH . E 5 HOH A 190 790 348 HOH HOH . E 5 HOH A 191 791 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5LR . . . C 3 19.948 -11.753 36.812 1 52.39 ? C4 5LR 502 A 1 HETATM 2 C C7 5LR . . . C 3 19.358 -10.239 38.527 1 57.78 ? C7 5LR 502 A 1 HETATM 3 C C8 5LR . . . C 3 18.558 -8.841 40.407 1 66.14 ? C8 5LR 502 A 1 HETATM 4 C C11 5LR . . . C 3 21.12 -11.963 43.068 1 82.03 ? C11 5LR 502 A 1 HETATM 5 C C12 5LR . . . C 3 21.061 -13.475 42.929 1 84.56 ? C12 5LR 502 A 1 HETATM 6 C C15 5LR . . . C 3 20.939 -16.277 42.675 1 83.95 ? C15 5LR 502 A 1 HETATM 7 C C18 5LR . . . C 3 18.598 -13.312 42.229 1 84.83 ? C18 5LR 502 A 1 HETATM 8 C C19 5LR . . . C 3 19.093 -12.013 41.612 1 83.89 ? C19 5LR 502 A 1 HETATM 9 O O1 5LR . . . C 3 19.029 -13.592 38.331 1 52.26 ? O1 5LR 502 A 1 HETATM 10 S S 5LR . . . C 3 18.677 -12.365 37.667 1 55.97 ? S 5LR 502 A 1 HETATM 11 O O 5LR . . . C 3 17.496 -12.507 36.866 1 54.2 ? O 5LR 502 A 1 HETATM 12 C C3 5LR . . . C 3 20.538 -12.461 35.647 1 47.94 ? C3 5LR 502 A 1 HETATM 13 C C2 5LR . . . C 3 19.724 -12.922 34.622 1 47.53 ? C2 5LR 502 A 1 HETATM 14 C C1 5LR . . . C 3 20.29 -13.553 33.522 1 47.36 ? C1 5LR 502 A 1 HETATM 15 C C20 5LR . . . C 3 21.923 -12.599 35.553 1 47.04 ? C20 5LR 502 A 1 HETATM 16 C C21 5LR . . . C 3 22.49 -13.231 34.45 1 46.22 ? C21 5LR 502 A 1 HETATM 17 C C 5LR . . . C 3 21.667 -13.707 33.435 1 46.9 ? C 5LR 502 A 1 HETATM 18 CL CL 5LR . . . C 3 22.348 -14.532 32 1 48.05 ? CL 5LR 502 A 1 HETATM 19 N N2 5LR . . . C 3 18.434 -11.215 38.762 1 57.2 ? N2 5LR 502 A 1 HETATM 20 C C5 5LR . . . C 3 20.31 -10.443 37.393 1 52.98 ? C5 5LR 502 A 1 HETATM 21 C C6 5LR . . . C 3 21.414 -9.561 36.894 1 53.13 ? C6 5LR 502 A 1 HETATM 22 N N 5LR . . . C 3 19.436 -9.111 39.281 1 62.56 ? N 5LR 502 A 1 HETATM 23 C C9 5LR . . . C 3 19.284 -8.928 41.752 1 71.86 ? C9 5LR 502 A 1 HETATM 24 C C10 5LR . . . C 3 20.388 -9.994 41.852 1 76.52 ? C10 5LR 502 A 1 HETATM 25 N N1 5LR . . . C 3 19.938 -11.227 42.541 1 82.32 ? N1 5LR 502 A 1 HETATM 26 C C13 5LR . . . C 3 19.811 -14.151 42.516 1 84.99 ? C13 5LR 502 A 1 HETATM 27 C C14 5LR . . . C 3 19.795 -15.535 42.4 1 84.87 ? C14 5LR 502 A 1 HETATM 28 C C16 5LR . . . C 3 22.125 -15.655 43.066 1 83.95 ? C16 5LR 502 A 1 HETATM 29 C C17 5LR . . . C 3 22.18 -14.267 43.189 1 84.44 ? C17 5LR 502 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #