data_5EBW # _model_server_result.job_id rZakg28wDMFiLCAPRVPzXA _model_server_result.datetime_utc '2024-10-12 15:25:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ebw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 5EBW # _exptl.entry_id 5EBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.254 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NONAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EBW _cell.length_a 156.91 _cell.length_b 156.91 _cell.length_c 75.837 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 2 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 3 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 313.82 0 3 'crystal symmetry operation' 3_665 -y+1,x+1,z 0 -1 0 1 0 0 0 0 1 156.91 156.91 0 4 'crystal symmetry operation' 4_465 y-1,-x+1,z 0 1 0 -1 0 0 0 0 1 -156.91 156.91 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 C C VAL 76 C VAL 76 1_555 C O2 GOA 77 C GOA 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C GOA 77 C GOA 77 1_555 C N TYR 78 C TYR 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 C O THR 75 C THR 75 1_555 H K K . C K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc2 C O THR 75 C THR 75 1_555 H K K . C K 1004 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc3 C O THR 75 C THR 75 1_555 I K K . C K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc4 C OG1 THR 75 C THR 75 1_555 I K K . C K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc5 C O THR 75 C THR 75 1_555 I K K . C K 1005 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc6 C OG1 THR 75 C THR 75 1_555 I K K . C K 1005 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc7 C O VAL 76 C VAL 76 1_555 G K K . C K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc8 C O VAL 76 C VAL 76 1_555 G K K . C K 1003 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc9 C O VAL 76 C VAL 76 1_555 H K K . C K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc10 C O VAL 76 C VAL 76 1_555 H K K . C K 1004 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc11 C O GOA 77 C GOA 77 1_555 F K K . C K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc12 C O GOA 77 C GOA 77 1_555 F K K . C K 1002 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc13 C O GOA 77 C GOA 77 1_555 G K K . C K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc14 C O GOA 77 C GOA 77 1_555 G K K . C K 1003 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc15 C O TYR 78 C TYR 78 1_555 F K K . C K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc16 C O TYR 78 C TYR 78 1_555 F K K . C K 1002 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? # _chem_comp.formula 'C9 H20 O' _chem_comp.formula_weight 144.254 _chem_comp.id F09 _chem_comp.mon_nstd_flag . _chem_comp.name NONAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 F09 sing 202 n n C1 H11 F09 sing 203 n n C1 H12 F09 sing 204 n n C1 H13 F09 sing 205 n n C2 C3 F09 sing 206 n n C2 H21 F09 sing 207 n n C2 H22 F09 sing 208 n n C3 C4 F09 sing 209 n n C3 H31 F09 sing 210 n n C3 H32 F09 sing 211 n n C4 C5 F09 sing 212 n n C4 H41 F09 sing 213 n n C4 H42 F09 sing 214 n n C5 C6 F09 sing 215 n n C5 H51 F09 sing 216 n n C5 H52 F09 sing 217 n n C6 C7 F09 sing 218 n n C6 H61 F09 sing 219 n n C6 H62 F09 sing 220 n n C7 C8 F09 sing 221 n n C7 H71 F09 sing 222 n n C7 H72 F09 sing 223 n n C8 C9 F09 sing 224 n n C8 H81 F09 sing 225 n n C8 H82 F09 sing 226 n n C9 OXT F09 sing 227 n n C9 H91 F09 sing 228 n n C9 H92 F09 sing 229 n n OXT HXT F09 sing 230 n n # _atom_sites.entry_id 5EBW _atom_sites.fract_transf_matrix[1][1] 0.006373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 A 1 2001 2001 F09 F09 . E 5 DGA C 1 1001 1001 DGA DGA . F 6 K C 1 1002 1 K K . G 6 K C 1 1003 2 K K . H 6 K C 1 1004 3 K K . I 6 K C 1 1005 4 K K . J 6 K C 1 1006 5 K K . K 6 K C 1 1007 6 K K . L 7 HOH A 1 2101 132 HOH HOH . L 7 HOH A 2 2102 171 HOH HOH . L 7 HOH A 3 2103 223 HOH HOH . L 7 HOH A 4 2104 18 HOH HOH . L 7 HOH A 5 2105 35 HOH HOH . L 7 HOH A 6 2106 86 HOH HOH . L 7 HOH A 7 2107 137 HOH HOH . L 7 HOH A 8 2108 71 HOH HOH . L 7 HOH A 9 2109 45 HOH HOH . L 7 HOH A 10 2110 72 HOH HOH . L 7 HOH A 11 2111 110 HOH HOH . L 7 HOH A 12 2112 94 HOH HOH . L 7 HOH A 13 2113 28 HOH HOH . L 7 HOH A 14 2114 54 HOH HOH . L 7 HOH A 15 2115 59 HOH HOH . L 7 HOH A 16 2116 20 HOH HOH . L 7 HOH A 17 2117 43 HOH HOH . L 7 HOH A 18 2118 182 HOH HOH . L 7 HOH A 19 2119 216 HOH HOH . L 7 HOH A 20 2120 87 HOH HOH . L 7 HOH A 21 2121 115 HOH HOH . L 7 HOH A 22 2122 80 HOH HOH . L 7 HOH A 23 2123 229 HOH HOH . L 7 HOH A 24 2124 2 HOH HOH . L 7 HOH A 25 2125 162 HOH HOH . L 7 HOH A 26 2126 73 HOH HOH . L 7 HOH A 27 2127 189 HOH HOH . L 7 HOH A 28 2128 15 HOH HOH . L 7 HOH A 29 2129 190 HOH HOH . L 7 HOH A 30 2130 84 HOH HOH . L 7 HOH A 31 2131 95 HOH HOH . L 7 HOH A 32 2132 68 HOH HOH . L 7 HOH A 33 2133 70 HOH HOH . L 7 HOH A 34 2134 173 HOH HOH . L 7 HOH A 35 2135 85 HOH HOH . L 7 HOH A 36 2136 33 HOH HOH . L 7 HOH A 37 2137 104 HOH HOH . L 7 HOH A 38 2138 60 HOH HOH . L 7 HOH A 39 2139 81 HOH HOH . L 7 HOH A 40 2140 89 HOH HOH . L 7 HOH A 41 2141 148 HOH HOH . L 7 HOH A 42 2142 101 HOH HOH . L 7 HOH A 43 2143 69 HOH HOH . L 7 HOH A 44 2144 196 HOH HOH . L 7 HOH A 45 2145 146 HOH HOH . L 7 HOH A 46 2146 186 HOH HOH . L 7 HOH A 47 2147 176 HOH HOH . L 7 HOH A 48 2148 153 HOH HOH . M 7 HOH B 1 301 166 HOH HOH . M 7 HOH B 2 302 61 HOH HOH . M 7 HOH B 3 303 142 HOH HOH . M 7 HOH B 4 304 108 HOH HOH . M 7 HOH B 5 305 24 HOH HOH . M 7 HOH B 6 306 42 HOH HOH . M 7 HOH B 7 307 16 HOH HOH . M 7 HOH B 8 308 49 HOH HOH . M 7 HOH B 9 309 17 HOH HOH . M 7 HOH B 10 310 41 HOH HOH . M 7 HOH B 11 311 88 HOH HOH . M 7 HOH B 12 312 141 HOH HOH . M 7 HOH B 13 313 62 HOH HOH . M 7 HOH B 14 314 44 HOH HOH . M 7 HOH B 15 315 36 HOH HOH . M 7 HOH B 16 316 10 HOH HOH . M 7 HOH B 17 317 144 HOH HOH . M 7 HOH B 18 318 75 HOH HOH . M 7 HOH B 19 319 136 HOH HOH . M 7 HOH B 20 320 27 HOH HOH . M 7 HOH B 21 321 82 HOH HOH . M 7 HOH B 22 322 53 HOH HOH . M 7 HOH B 23 323 12 HOH HOH . M 7 HOH B 24 324 37 HOH HOH . M 7 HOH B 25 325 120 HOH HOH . M 7 HOH B 26 326 74 HOH HOH . M 7 HOH B 27 327 7 HOH HOH . M 7 HOH B 28 328 6 HOH HOH . M 7 HOH B 29 329 119 HOH HOH . M 7 HOH B 30 330 31 HOH HOH . M 7 HOH B 31 331 32 HOH HOH . M 7 HOH B 32 332 78 HOH HOH . M 7 HOH B 33 333 38 HOH HOH . M 7 HOH B 34 334 52 HOH HOH . M 7 HOH B 35 335 34 HOH HOH . M 7 HOH B 36 336 9 HOH HOH . M 7 HOH B 37 337 209 HOH HOH . M 7 HOH B 38 338 22 HOH HOH . M 7 HOH B 39 339 25 HOH HOH . M 7 HOH B 40 340 8 HOH HOH . M 7 HOH B 41 341 40 HOH HOH . M 7 HOH B 42 342 4 HOH HOH . M 7 HOH B 43 343 204 HOH HOH . M 7 HOH B 44 344 23 HOH HOH . M 7 HOH B 45 345 19 HOH HOH . M 7 HOH B 46 346 100 HOH HOH . M 7 HOH B 47 347 224 HOH HOH . M 7 HOH B 48 348 46 HOH HOH . M 7 HOH B 49 349 21 HOH HOH . M 7 HOH B 50 350 96 HOH HOH . M 7 HOH B 51 351 123 HOH HOH . M 7 HOH B 52 352 65 HOH HOH . M 7 HOH B 53 353 13 HOH HOH . M 7 HOH B 54 354 226 HOH HOH . M 7 HOH B 55 355 63 HOH HOH . M 7 HOH B 56 356 56 HOH HOH . M 7 HOH B 57 357 92 HOH HOH . M 7 HOH B 58 358 174 HOH HOH . M 7 HOH B 59 359 228 HOH HOH . M 7 HOH B 60 360 79 HOH HOH . M 7 HOH B 61 361 29 HOH HOH . M 7 HOH B 62 362 205 HOH HOH . M 7 HOH B 63 363 50 HOH HOH . M 7 HOH B 64 364 222 HOH HOH . M 7 HOH B 65 365 218 HOH HOH . M 7 HOH B 66 366 57 HOH HOH . M 7 HOH B 67 367 191 HOH HOH . M 7 HOH B 68 368 214 HOH HOH . M 7 HOH B 69 369 194 HOH HOH . M 7 HOH B 70 370 206 HOH HOH . M 7 HOH B 71 371 90 HOH HOH . M 7 HOH B 72 372 66 HOH HOH . M 7 HOH B 73 373 127 HOH HOH . M 7 HOH B 74 374 180 HOH HOH . M 7 HOH B 75 375 112 HOH HOH . M 7 HOH B 76 376 160 HOH HOH . M 7 HOH B 77 377 199 HOH HOH . M 7 HOH B 78 378 192 HOH HOH . M 7 HOH B 79 379 48 HOH HOH . M 7 HOH B 80 380 125 HOH HOH . M 7 HOH B 81 381 197 HOH HOH . M 7 HOH B 82 382 149 HOH HOH . M 7 HOH B 83 383 103 HOH HOH . M 7 HOH B 84 384 227 HOH HOH . M 7 HOH B 85 385 221 HOH HOH . N 7 HOH C 1 1101 91 HOH HOH . N 7 HOH C 2 1102 122 HOH HOH . N 7 HOH C 3 1103 5 HOH HOH . N 7 HOH C 4 1104 225 HOH HOH . N 7 HOH C 5 1105 11 HOH HOH . N 7 HOH C 6 1106 83 HOH HOH . N 7 HOH C 7 1107 161 HOH HOH . N 7 HOH C 8 1108 3 HOH HOH . N 7 HOH C 9 1109 106 HOH HOH . N 7 HOH C 10 1110 77 HOH HOH . N 7 HOH C 11 1111 1 HOH HOH . N 7 HOH C 12 1112 47 HOH HOH . N 7 HOH C 13 1113 58 HOH HOH . N 7 HOH C 14 1114 39 HOH HOH . N 7 HOH C 15 1115 51 HOH HOH . N 7 HOH C 16 1116 26 HOH HOH . N 7 HOH C 17 1117 14 HOH HOH . N 7 HOH C 18 1118 147 HOH HOH . N 7 HOH C 19 1119 156 HOH HOH . N 7 HOH C 20 1120 126 HOH HOH . N 7 HOH C 21 1121 98 HOH HOH . N 7 HOH C 22 1122 107 HOH HOH . N 7 HOH C 23 1123 76 HOH HOH . N 7 HOH C 24 1124 213 HOH HOH . N 7 HOH C 25 1125 230 HOH HOH . N 7 HOH C 26 1126 203 HOH HOH . N 7 HOH C 27 1127 231 HOH HOH . N 7 HOH C 28 1128 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F09 . . . D 4 22.536 157.927 -37.894 1 61.46 ? C1 F09 2001 A 1 HETATM 2 C C2 F09 . . . D 4 22.822 156.843 -36.866 1 61.72 ? C2 F09 2001 A 1 HETATM 3 C C3 F09 . . . D 4 23.974 157.153 -35.919 1 61.62 ? C3 F09 2001 A 1 HETATM 4 C C4 F09 . . . D 4 23.965 156.335 -34.639 1 61.61 ? C4 F09 2001 A 1 HETATM 5 C C5 F09 . . . D 4 24.908 156.982 -33.639 1 61.51 ? C5 F09 2001 A 1 HETATM 6 C C6 F09 . . . D 4 24.729 156.481 -32.22 1 61.74 ? C6 F09 2001 A 1 HETATM 7 C C7 F09 . . . D 4 24.789 157.634 -31.228 1 61.86 ? C7 F09 2001 A 1 HETATM 8 C C8 F09 . . . D 4 25.978 157.607 -30.269 1 62.11 ? C8 F09 2001 A 1 HETATM 9 C C9 F09 . . . D 4 25.601 158.1 -28.878 1 62.49 ? C9 F09 2001 A 1 HETATM 10 O OXT F09 . . . D 4 26.571 159.019 -28.372 1 62.52 ? OXT F09 2001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #