data_5EC1
#
_model_server_result.job_id            6YlOEgufXO--y1D0sb-vKQ 
_model_server_result.datetime_utc      '2024-12-11 21:32:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ec1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2001}' 
#
_entry.id    5EC1 
#
_exptl.entry_id    5EC1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.254 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NONAN-1-OL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EC1 
_cell.length_a            155.6 
_cell.length_b            155.6 
_cell.length_c            75.64 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EC1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 2 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 3 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_355 -x-2,-y,z -1 0 0 0 -1 0 0 0 1 -311.2 0 0 
3 'crystal symmetry operation' 3_465 -y-1,x+1,z 0 -1 0 1 0 0 0 0 1 -155.6 155.6 0 
4 'crystal symmetry operation' 4_445 y-1,-x-1,z 0 1 0 -1 0 0 0 0 1 -155.6 -155.6 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 C C THR 75 C THR 75 1_555 C OE LHV 76 C LHV 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 C C LHV 76 C LHV 76 1_555 C N GLY 77 C GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 C O THR 75 C THR 75 1_555 H K K . C K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.213 ? 
metalc ? metalc2 C OG1 THR 75 C THR 75 1_555 H K K . C K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc3 C O THR 75 C THR 75 1_555 H K K . C K 2005 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 3.213 ? 
metalc ? metalc4 C OG1 THR 75 C THR 75 1_555 H K K . C K 2005 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc5 C O LHV 76 C LHV 76 1_555 G K K . C K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc6 C O LHV 76 C LHV 76 1_555 G K K . C K 2004 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc7 C O GLY 77 C GLY 77 1_555 F K K . C K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
metalc ? metalc8 C O GLY 77 C GLY 77 1_555 F K K . C K 2003 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
metalc ? metalc9 C O GLY 77 C GLY 77 1_555 G K K . C K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc10 C O GLY 77 C GLY 77 1_555 G K K . C K 2004 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc11 C O TYR 78 C TYR 78 1_555 F K K . C K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc12 C O TYR 78 C TYR 78 1_555 F K K . C K 2003 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc13 K K K . C K 2008 1_555 N O HOH . C HOH 2105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.254 ? 
metalc ? metalc14 K K K . C K 2008 1_555 N O HOH . C HOH 2105 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 3.254 ? 
#
_chem_comp.formula           'C9 H20 O' 
_chem_comp.formula_weight    144.254 
_chem_comp.id                F09 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NONAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 F09 sing 202 n n 
C1 H11 F09 sing 203 n n 
C1 H12 F09 sing 204 n n 
C1 H13 F09 sing 205 n n 
C2 C3 F09 sing 206 n n 
C2 H21 F09 sing 207 n n 
C2 H22 F09 sing 208 n n 
C3 C4 F09 sing 209 n n 
C3 H31 F09 sing 210 n n 
C3 H32 F09 sing 211 n n 
C4 C5 F09 sing 212 n n 
C4 H41 F09 sing 213 n n 
C4 H42 F09 sing 214 n n 
C5 C6 F09 sing 215 n n 
C5 H51 F09 sing 216 n n 
C5 H52 F09 sing 217 n n 
C6 C7 F09 sing 218 n n 
C6 H61 F09 sing 219 n n 
C6 H62 F09 sing 220 n n 
C7 C8 F09 sing 221 n n 
C7 H71 F09 sing 222 n n 
C7 H72 F09 sing 223 n n 
C8 C9 F09 sing 224 n n 
C8 H81 F09 sing 225 n n 
C8 H82 F09 sing 226 n n 
C9 OXT F09 sing 227 n n 
C9 H91 F09 sing 228 n n 
C9 H92 F09 sing 229 n n 
OXT HXT F09 sing 230 n n 
#
_atom_sites.entry_id                     5EC1 
_atom_sites.fract_transf_matrix[1][1]    0.006427 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006427 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013221 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 F09 C 1 2001 2001 F09 F09 . 
E 5 DGA C 1 2002 1001 DGA DGA . 
F 6 K C 1 2003 1 K K . 
G 6 K C 1 2004 2 K K . 
H 6 K C 1 2005 3 K K . 
I 6 K C 1 2006 5 K K . 
J 6 K C 1 2007 6 K K . 
K 6 K C 1 2008 7 K K . 
L 7 HOH A 1 301 11 HOH HOH . 
L 7 HOH A 2 302 20 HOH HOH . 
M 7 HOH B 1 301 1 HOH HOH . 
M 7 HOH B 2 302 25 HOH HOH . 
M 7 HOH B 3 303 21 HOH HOH . 
M 7 HOH B 4 304 22 HOH HOH . 
M 7 HOH B 5 305 5 HOH HOH . 
M 7 HOH B 6 306 18 HOH HOH . 
M 7 HOH B 7 307 4 HOH HOH . 
M 7 HOH B 8 308 24 HOH HOH . 
M 7 HOH B 9 309 23 HOH HOH . 
N 7 HOH C 1 2101 29 HOH HOH . 
N 7 HOH C 2 2102 3 HOH HOH . 
N 7 HOH C 3 2103 10 HOH HOH . 
N 7 HOH C 4 2104 28 HOH HOH . 
N 7 HOH C 5 2105 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 F09 . . . D 4 -135.387 -1.223 38.109 1 61.46 ? C1 F09 2001 C 1 
HETATM 2 C C2 F09 . . . D 4 -134.596 -0.299 37.209 1 61.72 ? C2 F09 2001 C 1 
HETATM 3 C C3 F09 . . . D 4 -133.318 -0.972 36.723 1 61.62 ? C3 F09 2001 C 1 
HETATM 4 C C4 F09 . . . D 4 -132.353 0.05 36.133 1 61.61 ? C4 F09 2001 C 1 
HETATM 5 C C5 F09 . . . D 4 -132.275 -0.083 34.617 1 61.51 ? C5 F09 2001 C 1 
HETATM 6 C C6 F09 . . . D 4 -131.304 0.933 34.029 1 61.74 ? C6 F09 2001 C 1 
HETATM 7 C C7 F09 . . . D 4 -131.441 1.005 32.513 1 61.86 ? C7 F09 2001 C 1 
HETATM 8 C C8 F09 . . . D 4 -130.664 -0.12 31.84 1 62.11 ? C8 F09 2001 C 1 
HETATM 9 C C9 F09 . . . D 4 -130.063 0.345 30.518 1 62.49 ? C9 F09 2001 C 1 
HETATM 10 O OXT F09 . . . D 4 -130.038 -0.748 29.594 1 62.52 ? OXT F09 2001 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           10 
#