data_5EC4 # _model_server_result.job_id S7kNKwFjMTU6kru9qT5OOQ _model_server_result.datetime_utc '2024-10-19 00:54:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ec4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5EC4 # _exptl.entry_id 5EC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EC4 _cell.length_a 175.632 _cell.length_b 175.632 _cell.length_c 122.215 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 122.215 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 122.215 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 122.215 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 119 n y N1A C6A COA doub 120 n y C2A N3A COA doub 121 n y C2A H2A COA sing 122 n n N3A C4A COA sing 123 n y C4A C5A COA doub 124 n y C4A N9A COA sing 125 n y C5A C6A COA sing 126 n y C5A N7A COA sing 127 n y C6A N6A COA sing 128 n n N6A H61A COA sing 129 n n N6A H62A COA sing 130 n n N7A C8A COA doub 131 n y C8A N9A COA sing 132 n y C8A H8A COA sing 133 n n N9A C1B COA sing 134 n n C1B C2B COA sing 135 n n C1B O4B COA sing 136 n n C1B H1B COA sing 137 n n C2B O2B COA sing 138 n n C2B C3B COA sing 139 n n C2B H2B COA sing 140 n n O2B HO2A COA sing 141 n n C3B O3B COA sing 142 n n C3B C4B COA sing 143 n n C3B H3B COA sing 144 n n O3B P3B COA sing 145 n n P3B O7A COA doub 146 n n P3B O8A COA sing 147 n n P3B O9A COA sing 148 n n O8A HOA8 COA sing 149 n n O9A HOA9 COA sing 150 n n C4B O4B COA sing 151 n n C4B C5B COA sing 152 n n C4B H4B COA sing 153 n n C5B O5B COA sing 154 n n C5B H51A COA sing 155 n n C5B H52A COA sing 156 n n O5B P1A COA sing 157 n n P1A O1A COA doub 158 n n P1A O2A COA sing 159 n n P1A O3A COA sing 160 n n O2A HOA2 COA sing 161 n n O3A P2A COA sing 162 n n P2A O4A COA doub 163 n n P2A O5A COA sing 164 n n P2A O6A COA sing 165 n n O5A HOA5 COA sing 166 n n O6A CCP COA sing 167 n n CBP CCP COA sing 168 n n CBP CDP COA sing 169 n n CBP CEP COA sing 170 n n CBP CAP COA sing 171 n n CCP H121 COA sing 172 n n CCP H122 COA sing 173 n n CDP H131 COA sing 174 n n CDP H132 COA sing 175 n n CDP H133 COA sing 176 n n CEP H141 COA sing 177 n n CEP H142 COA sing 178 n n CEP H143 COA sing 179 n n CAP OAP COA sing 180 n n CAP C9P COA sing 181 n n CAP H10 COA sing 182 n n OAP HO1 COA sing 183 n n C9P O9P COA doub 184 n n C9P N8P COA sing 185 n n N8P C7P COA sing 186 n n N8P HN8 COA sing 187 n n C7P C6P COA sing 188 n n C7P H71 COA sing 189 n n C7P H72 COA sing 190 n n C6P C5P COA sing 191 n n C6P H61 COA sing 192 n n C6P H62 COA sing 193 n n C5P O5P COA doub 194 n n C5P N4P COA sing 195 n n N4P C3P COA sing 196 n n N4P HN4 COA sing 197 n n C3P C2P COA sing 198 n n C3P H31 COA sing 199 n n C3P H32 COA sing 200 n n C2P S1P COA sing 201 n n C2P H21 COA sing 202 n n C2P H22 COA sing 203 n n S1P HS1 COA sing 204 n n # _atom_sites.entry_id 5EC4 _atom_sites.fract_transf_matrix[1][1] 0.005694 _atom_sites.fract_transf_matrix[1][2] 0.003287 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 500 COA COA . C 3 5LQ A 1 502 505 5LQ AA3 . D 4 HOH A 1 601 74 HOH HOH . D 4 HOH A 2 602 271 HOH HOH . D 4 HOH A 3 603 229 HOH HOH . D 4 HOH A 4 604 238 HOH HOH . D 4 HOH A 5 605 201 HOH HOH . D 4 HOH A 6 606 243 HOH HOH . D 4 HOH A 7 607 52 HOH HOH . D 4 HOH A 8 608 125 HOH HOH . D 4 HOH A 9 609 206 HOH HOH . D 4 HOH A 10 610 6 HOH HOH . D 4 HOH A 11 611 274 HOH HOH . D 4 HOH A 12 612 204 HOH HOH . D 4 HOH A 13 613 30 HOH HOH . D 4 HOH A 14 614 362 HOH HOH . D 4 HOH A 15 615 207 HOH HOH . D 4 HOH A 16 616 203 HOH HOH . D 4 HOH A 17 617 239 HOH HOH . D 4 HOH A 18 618 297 HOH HOH . D 4 HOH A 19 619 338 HOH HOH . D 4 HOH A 20 620 205 HOH HOH . D 4 HOH A 21 621 305 HOH HOH . D 4 HOH A 22 622 328 HOH HOH . D 4 HOH A 23 623 216 HOH HOH . D 4 HOH A 24 624 9 HOH HOH . D 4 HOH A 25 625 211 HOH HOH . D 4 HOH A 26 626 244 HOH HOH . D 4 HOH A 27 627 95 HOH HOH . D 4 HOH A 28 628 248 HOH HOH . D 4 HOH A 29 629 361 HOH HOH . D 4 HOH A 30 630 44 HOH HOH . D 4 HOH A 31 631 91 HOH HOH . D 4 HOH A 32 632 92 HOH HOH . D 4 HOH A 33 633 222 HOH HOH . D 4 HOH A 34 634 85 HOH HOH . D 4 HOH A 35 635 29 HOH HOH . D 4 HOH A 36 636 165 HOH HOH . D 4 HOH A 37 637 144 HOH HOH . D 4 HOH A 38 638 105 HOH HOH . D 4 HOH A 39 639 187 HOH HOH . D 4 HOH A 40 640 247 HOH HOH . D 4 HOH A 41 641 98 HOH HOH . D 4 HOH A 42 642 90 HOH HOH . D 4 HOH A 43 643 313 HOH HOH . D 4 HOH A 44 644 19 HOH HOH . D 4 HOH A 45 645 65 HOH HOH . D 4 HOH A 46 646 39 HOH HOH . D 4 HOH A 47 647 232 HOH HOH . D 4 HOH A 48 648 259 HOH HOH . D 4 HOH A 49 649 126 HOH HOH . D 4 HOH A 50 650 161 HOH HOH . D 4 HOH A 51 651 198 HOH HOH . D 4 HOH A 52 652 228 HOH HOH . D 4 HOH A 53 653 219 HOH HOH . D 4 HOH A 54 654 223 HOH HOH . D 4 HOH A 55 655 267 HOH HOH . D 4 HOH A 56 656 200 HOH HOH . D 4 HOH A 57 657 320 HOH HOH . D 4 HOH A 58 658 265 HOH HOH . D 4 HOH A 59 659 217 HOH HOH . D 4 HOH A 60 660 246 HOH HOH . D 4 HOH A 61 661 303 HOH HOH . D 4 HOH A 62 662 355 HOH HOH . D 4 HOH A 63 663 334 HOH HOH . D 4 HOH A 64 664 251 HOH HOH . D 4 HOH A 65 665 233 HOH HOH . D 4 HOH A 66 666 359 HOH HOH . D 4 HOH A 67 667 138 HOH HOH . D 4 HOH A 68 668 296 HOH HOH . D 4 HOH A 69 669 332 HOH HOH . D 4 HOH A 70 670 230 HOH HOH . D 4 HOH A 71 671 236 HOH HOH . D 4 HOH A 72 672 235 HOH HOH . D 4 HOH A 73 673 323 HOH HOH . D 4 HOH A 74 674 33 HOH HOH . D 4 HOH A 75 675 31 HOH HOH . D 4 HOH A 76 676 88 HOH HOH . D 4 HOH A 77 677 250 HOH HOH . D 4 HOH A 78 678 174 HOH HOH . D 4 HOH A 79 679 255 HOH HOH . D 4 HOH A 80 680 353 HOH HOH . D 4 HOH A 81 681 304 HOH HOH . D 4 HOH A 82 682 146 HOH HOH . D 4 HOH A 83 683 360 HOH HOH . D 4 HOH A 84 684 294 HOH HOH . D 4 HOH A 85 685 256 HOH HOH . D 4 HOH A 86 686 67 HOH HOH . D 4 HOH A 87 687 169 HOH HOH . D 4 HOH A 88 688 300 HOH HOH . D 4 HOH A 89 689 290 HOH HOH . D 4 HOH A 90 690 241 HOH HOH . D 4 HOH A 91 691 192 HOH HOH . D 4 HOH A 92 692 321 HOH HOH . D 4 HOH A 93 693 178 HOH HOH . D 4 HOH A 94 694 142 HOH HOH . D 4 HOH A 95 695 209 HOH HOH . D 4 HOH A 96 696 326 HOH HOH . D 4 HOH A 97 697 309 HOH HOH . D 4 HOH A 98 698 298 HOH HOH . D 4 HOH A 99 699 70 HOH HOH . D 4 HOH A 100 700 210 HOH HOH . D 4 HOH A 101 701 220 HOH HOH . D 4 HOH A 102 702 128 HOH HOH . D 4 HOH A 103 703 208 HOH HOH . D 4 HOH A 104 704 132 HOH HOH . D 4 HOH A 105 705 214 HOH HOH . D 4 HOH A 106 706 335 HOH HOH . D 4 HOH A 107 707 213 HOH HOH . D 4 HOH A 108 708 120 HOH HOH . D 4 HOH A 109 709 358 HOH HOH . D 4 HOH A 110 710 129 HOH HOH . D 4 HOH A 111 711 15 HOH HOH . D 4 HOH A 112 712 25 HOH HOH . D 4 HOH A 113 713 279 HOH HOH . D 4 HOH A 114 714 82 HOH HOH . D 4 HOH A 115 715 351 HOH HOH . D 4 HOH A 116 716 260 HOH HOH . D 4 HOH A 117 717 212 HOH HOH . D 4 HOH A 118 718 215 HOH HOH . D 4 HOH A 119 719 308 HOH HOH . D 4 HOH A 120 720 263 HOH HOH . D 4 HOH A 121 721 352 HOH HOH . D 4 HOH A 122 722 363 HOH HOH . D 4 HOH A 123 723 21 HOH HOH . D 4 HOH A 124 724 224 HOH HOH . D 4 HOH A 125 725 131 HOH HOH . D 4 HOH A 126 726 234 HOH HOH . D 4 HOH A 127 727 354 HOH HOH . D 4 HOH A 128 728 278 HOH HOH . D 4 HOH A 129 729 315 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 17.834 -24.124 53.926 1 125.41 ? N1A COA 501 A 1 HETATM 2 C C2A COA . . . B 2 18.576 -24.994 54.644 1 123.87 ? C2A COA 501 A 1 HETATM 3 N N3A COA . . . B 2 19.544 -25.757 54.093 1 124.37 ? N3A COA 501 A 1 HETATM 4 C C4A COA . . . B 2 19.828 -25.687 52.762 1 126.8 ? C4A COA 501 A 1 HETATM 5 C C5A COA . . . B 2 19.057 -24.758 51.918 1 126.69 ? C5A COA 501 A 1 HETATM 6 C C6A COA . . . B 2 18.008 -23.951 52.591 1 125.64 ? C6A COA 501 A 1 HETATM 7 N N6A COA . . . B 2 17.25 -23.072 51.893 1 125.41 ? N6A COA 501 A 1 HETATM 8 N N7A COA . . . B 2 19.535 -24.888 50.666 1 124.85 ? N7A COA 501 A 1 HETATM 9 C C8A COA . . . B 2 20.527 -25.818 50.694 1 124.1 ? C8A COA 501 A 1 HETATM 10 N N9A COA . . . B 2 20.696 -26.297 51.946 1 124.01 ? N9A COA 501 A 1 HETATM 11 C C1B COA . . . B 2 21.694 -27.316 52.38 1 120.89 ? C1B COA 501 A 1 HETATM 12 C C2B COA . . . B 2 21.066 -28.68 52.623 1 117.53 ? C2B COA 501 A 1 HETATM 13 O O2B COA . . . B 2 20.565 -28.805 53.961 1 114.26 ? O2B COA 501 A 1 HETATM 14 C C3B COA . . . B 2 22.212 -29.633 52.342 1 116.61 ? C3B COA 501 A 1 HETATM 15 O O3B COA . . . B 2 22.919 -29.916 53.549 1 119.52 ? O3B COA 501 A 1 HETATM 16 P P3B COA . . . B 2 23.8 -31.251 53.736 1 125.17 ? P3B COA 501 A 1 HETATM 17 O O7A COA . . . B 2 22.856 -32.369 53.354 1 122.63 ? O7A COA 501 A 1 HETATM 18 O O8A COA . . . B 2 24.173 -31.236 55.202 1 120.64 ? O8A COA 501 A 1 HETATM 19 O O9A COA . . . B 2 24.971 -31.059 52.795 1 121.86 ? O9A COA 501 A 1 HETATM 20 C C4B COA . . . B 2 23.105 -28.892 51.35 1 111.54 ? C4B COA 501 A 1 HETATM 21 O O4B COA . . . B 2 22.726 -27.514 51.401 1 116.29 ? O4B COA 501 A 1 HETATM 22 C C5B COA . . . B 2 22.946 -29.416 49.927 1 104.75 ? C5B COA 501 A 1 HETATM 23 O O5B COA . . . B 2 21.579 -29.277 49.533 1 96.03 ? O5B COA 501 A 1 HETATM 24 P P1A COA . . . B 2 21.079 -29.3 47.999 1 86.52 ? P1A COA 501 A 1 HETATM 25 O O1A COA . . . B 2 20.058 -30.406 47.871 1 83.82 ? O1A COA 501 A 1 HETATM 26 O O2A COA . . . B 2 22.289 -29.279 47.099 1 82.34 ? O2A COA 501 A 1 HETATM 27 O O3A COA . . . B 2 20.31 -27.882 47.898 1 86.67 ? O3A COA 501 A 1 HETATM 28 P P2A COA . . . B 2 18.999 -27.618 46.989 1 81.4 ? P2A COA 501 A 1 HETATM 29 O O4A COA . . . B 2 17.758 -27.881 47.818 1 80.3 ? O4A COA 501 A 1 HETATM 30 O O5A COA . . . B 2 19.261 -28.339 45.693 1 72.02 ? O5A COA 501 A 1 HETATM 31 O O6A COA . . . B 2 19.086 -26.021 46.731 1 91.84 ? O6A COA 501 A 1 HETATM 32 C CBP COA . . . B 2 18.757 -23.687 46.788 1 102.37 ? CBP COA 501 A 1 HETATM 33 C CCP COA . . . B 2 18.036 -25.04 46.814 1 95.3 ? CCP COA 501 A 1 HETATM 34 C CDP COA . . . B 2 19.367 -23.245 45.461 1 100.79 ? CDP COA 501 A 1 HETATM 35 C CEP COA . . . B 2 19.011 -22.978 48.12 1 101.54 ? CEP COA 501 A 1 HETATM 36 C CAP COA . . . B 2 17.433 -22.855 46.522 1 109.84 ? CAP COA 501 A 1 HETATM 37 O OAP COA . . . B 2 16.734 -22.534 47.742 1 112.93 ? OAP COA 501 A 1 HETATM 38 C C9P COA . . . B 2 17.511 -21.56 45.697 1 114.55 ? C9P COA 501 A 1 HETATM 39 O O9P COA . . . B 2 16.884 -21.51 44.641 1 113.83 ? O9P COA 501 A 1 HETATM 40 N N8P COA . . . B 2 18.256 -20.519 46.112 1 114.02 ? N8P COA 501 A 1 HETATM 41 C C7P COA . . . B 2 18.472 -19.303 45.337 1 113.21 ? C7P COA 501 A 1 HETATM 42 C C6P COA . . . B 2 19.97 -18.985 45.255 1 114.35 ? C6P COA 501 A 1 HETATM 43 C C5P COA . . . B 2 20.273 -17.594 44.718 1 112.75 ? C5P COA 501 A 1 HETATM 44 O O5P COA . . . B 2 19.365 -16.85 44.372 1 118.39 ? O5P COA 501 A 1 HETATM 45 N N4P COA . . . B 2 21.574 -17.257 44.66 1 104.13 ? N4P COA 501 A 1 HETATM 46 C C3P COA . . . B 2 22.06 -15.958 44.21 1 94.18 ? C3P COA 501 A 1 HETATM 47 C C2P COA . . . B 2 22.412 -15.928 42.724 1 90.05 ? C2P COA 501 A 1 HETATM 48 S S1P COA . . . B 2 20.925 -16.111 41.689 1 83.91 ? S1P COA 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #