data_5EC6 # _model_server_result.job_id VZ_6EQJ3c1BiPSuOdxKUkA _model_server_result.datetime_utc '2024-11-04 22:56:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ec6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5EC6 # _exptl.entry_id 5EC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EC6 _cell.length_a 102.47 _cell.length_b 102.47 _cell.length_c 77.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 5EC6 _atom_sites.fract_transf_matrix[1][1] 0.009759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 3 HOH A 1 501 353 HOH HOH . D 3 HOH A 2 502 201 HOH HOH . D 3 HOH A 3 503 189 HOH HOH . D 3 HOH A 4 504 354 HOH HOH . D 3 HOH A 5 505 247 HOH HOH . D 3 HOH A 6 506 203 HOH HOH . D 3 HOH A 7 507 332 HOH HOH . D 3 HOH A 8 508 208 HOH HOH . D 3 HOH A 9 509 357 HOH HOH . D 3 HOH A 10 510 11 HOH HOH . D 3 HOH A 11 511 338 HOH HOH . D 3 HOH A 12 512 329 HOH HOH . D 3 HOH A 13 513 43 HOH HOH . D 3 HOH A 14 514 296 HOH HOH . D 3 HOH A 15 515 116 HOH HOH . D 3 HOH A 16 516 210 HOH HOH . D 3 HOH A 17 517 94 HOH HOH . D 3 HOH A 18 518 131 HOH HOH . D 3 HOH A 19 519 217 HOH HOH . D 3 HOH A 20 520 30 HOH HOH . D 3 HOH A 21 521 120 HOH HOH . D 3 HOH A 22 522 218 HOH HOH . D 3 HOH A 23 523 273 HOH HOH . D 3 HOH A 24 524 309 HOH HOH . D 3 HOH A 25 525 51 HOH HOH . D 3 HOH A 26 526 7 HOH HOH . D 3 HOH A 27 527 223 HOH HOH . D 3 HOH A 28 528 137 HOH HOH . D 3 HOH A 29 529 149 HOH HOH . D 3 HOH A 30 530 4 HOH HOH . D 3 HOH A 31 531 170 HOH HOH . D 3 HOH A 32 532 253 HOH HOH . D 3 HOH A 33 533 315 HOH HOH . D 3 HOH A 34 534 76 HOH HOH . D 3 HOH A 35 535 3 HOH HOH . D 3 HOH A 36 536 60 HOH HOH . D 3 HOH A 37 537 159 HOH HOH . D 3 HOH A 38 538 177 HOH HOH . D 3 HOH A 39 539 162 HOH HOH . D 3 HOH A 40 540 358 HOH HOH . D 3 HOH A 41 541 34 HOH HOH . D 3 HOH A 42 542 134 HOH HOH . D 3 HOH A 43 543 307 HOH HOH . D 3 HOH A 44 544 266 HOH HOH . D 3 HOH A 45 545 289 HOH HOH . D 3 HOH A 46 546 155 HOH HOH . D 3 HOH A 47 547 291 HOH HOH . D 3 HOH A 48 548 80 HOH HOH . D 3 HOH A 49 549 212 HOH HOH . D 3 HOH A 50 550 37 HOH HOH . D 3 HOH A 51 551 122 HOH HOH . D 3 HOH A 52 552 61 HOH HOH . D 3 HOH A 53 553 142 HOH HOH . D 3 HOH A 54 554 115 HOH HOH . D 3 HOH A 55 555 63 HOH HOH . D 3 HOH A 56 556 301 HOH HOH . D 3 HOH A 57 557 195 HOH HOH . D 3 HOH A 58 558 104 HOH HOH . D 3 HOH A 59 559 243 HOH HOH . D 3 HOH A 60 560 29 HOH HOH . D 3 HOH A 61 561 75 HOH HOH . D 3 HOH A 62 562 280 HOH HOH . D 3 HOH A 63 563 18 HOH HOH . D 3 HOH A 64 564 290 HOH HOH . D 3 HOH A 65 565 83 HOH HOH . D 3 HOH A 66 566 73 HOH HOH . D 3 HOH A 67 567 219 HOH HOH . D 3 HOH A 68 568 44 HOH HOH . D 3 HOH A 69 569 237 HOH HOH . D 3 HOH A 70 570 26 HOH HOH . D 3 HOH A 71 571 68 HOH HOH . D 3 HOH A 72 572 25 HOH HOH . D 3 HOH A 73 573 9 HOH HOH . D 3 HOH A 74 574 171 HOH HOH . D 3 HOH A 75 575 172 HOH HOH . D 3 HOH A 76 576 187 HOH HOH . D 3 HOH A 77 577 306 HOH HOH . D 3 HOH A 78 578 269 HOH HOH . D 3 HOH A 79 579 5 HOH HOH . D 3 HOH A 80 580 334 HOH HOH . D 3 HOH A 81 581 263 HOH HOH . D 3 HOH A 82 582 324 HOH HOH . D 3 HOH A 83 583 188 HOH HOH . D 3 HOH A 84 584 295 HOH HOH . D 3 HOH A 85 585 8 HOH HOH . D 3 HOH A 86 586 166 HOH HOH . D 3 HOH A 87 587 211 HOH HOH . D 3 HOH A 88 588 108 HOH HOH . D 3 HOH A 89 589 331 HOH HOH . D 3 HOH A 90 590 319 HOH HOH . D 3 HOH A 91 591 22 HOH HOH . D 3 HOH A 92 592 121 HOH HOH . D 3 HOH A 93 593 15 HOH HOH . D 3 HOH A 94 594 209 HOH HOH . D 3 HOH A 95 595 191 HOH HOH . D 3 HOH A 96 596 64 HOH HOH . D 3 HOH A 97 597 77 HOH HOH . D 3 HOH A 98 598 32 HOH HOH . D 3 HOH A 99 599 36 HOH HOH . D 3 HOH A 100 600 178 HOH HOH . D 3 HOH A 101 601 184 HOH HOH . D 3 HOH A 102 602 199 HOH HOH . D 3 HOH A 103 603 302 HOH HOH . D 3 HOH A 104 604 85 HOH HOH . D 3 HOH A 105 605 17 HOH HOH . D 3 HOH A 106 606 164 HOH HOH . D 3 HOH A 107 607 56 HOH HOH . D 3 HOH A 108 608 66 HOH HOH . D 3 HOH A 109 609 230 HOH HOH . D 3 HOH A 110 610 141 HOH HOH . D 3 HOH A 111 611 316 HOH HOH . D 3 HOH A 112 612 2 HOH HOH . D 3 HOH A 113 613 174 HOH HOH . D 3 HOH A 114 614 250 HOH HOH . D 3 HOH A 115 615 69 HOH HOH . D 3 HOH A 116 616 62 HOH HOH . D 3 HOH A 117 617 196 HOH HOH . D 3 HOH A 118 618 47 HOH HOH . D 3 HOH A 119 619 132 HOH HOH . D 3 HOH A 120 620 114 HOH HOH . D 3 HOH A 121 621 133 HOH HOH . D 3 HOH A 122 622 112 HOH HOH . D 3 HOH A 123 623 321 HOH HOH . D 3 HOH A 124 624 33 HOH HOH . D 3 HOH A 125 625 13 HOH HOH . D 3 HOH A 126 626 221 HOH HOH . D 3 HOH A 127 627 165 HOH HOH . D 3 HOH A 128 628 31 HOH HOH . D 3 HOH A 129 629 28 HOH HOH . D 3 HOH A 130 630 19 HOH HOH . D 3 HOH A 131 631 93 HOH HOH . D 3 HOH A 132 632 74 HOH HOH . D 3 HOH A 133 633 24 HOH HOH . D 3 HOH A 134 634 58 HOH HOH . D 3 HOH A 135 635 16 HOH HOH . D 3 HOH A 136 636 297 HOH HOH . D 3 HOH A 137 637 38 HOH HOH . D 3 HOH A 138 638 270 HOH HOH . D 3 HOH A 139 639 147 HOH HOH . D 3 HOH A 140 640 45 HOH HOH . D 3 HOH A 141 641 252 HOH HOH . D 3 HOH A 142 642 271 HOH HOH . D 3 HOH A 143 643 89 HOH HOH . D 3 HOH A 144 644 190 HOH HOH . D 3 HOH A 145 645 52 HOH HOH . D 3 HOH A 146 646 283 HOH HOH . D 3 HOH A 147 647 99 HOH HOH . D 3 HOH A 148 648 298 HOH HOH . D 3 HOH A 149 649 292 HOH HOH . D 3 HOH A 150 650 82 HOH HOH . D 3 HOH A 151 651 220 HOH HOH . D 3 HOH A 152 652 339 HOH HOH . D 3 HOH A 153 653 10 HOH HOH . D 3 HOH A 154 654 233 HOH HOH . D 3 HOH A 155 655 91 HOH HOH . D 3 HOH A 156 656 95 HOH HOH . D 3 HOH A 157 657 308 HOH HOH . D 3 HOH A 158 658 67 HOH HOH . D 3 HOH A 159 659 53 HOH HOH . D 3 HOH A 160 660 160 HOH HOH . D 3 HOH A 161 661 140 HOH HOH . D 3 HOH A 162 662 109 HOH HOH . D 3 HOH A 163 663 156 HOH HOH . D 3 HOH A 164 664 143 HOH HOH . D 3 HOH A 165 665 101 HOH HOH . D 3 HOH A 166 666 42 HOH HOH . D 3 HOH A 167 667 12 HOH HOH . D 3 HOH A 168 668 126 HOH HOH . D 3 HOH A 169 669 314 HOH HOH . D 3 HOH A 170 670 6 HOH HOH . D 3 HOH A 171 671 81 HOH HOH . D 3 HOH A 172 672 129 HOH HOH . D 3 HOH A 173 673 54 HOH HOH . D 3 HOH A 174 674 144 HOH HOH . D 3 HOH A 175 675 277 HOH HOH . D 3 HOH A 176 676 300 HOH HOH . D 3 HOH A 177 677 105 HOH HOH . D 3 HOH A 178 678 294 HOH HOH . D 3 HOH A 179 679 206 HOH HOH . D 3 HOH A 180 680 342 HOH HOH . D 3 HOH A 181 681 48 HOH HOH . D 3 HOH A 182 682 255 HOH HOH . D 3 HOH A 183 683 227 HOH HOH . D 3 HOH A 184 684 181 HOH HOH . D 3 HOH A 185 685 72 HOH HOH . D 3 HOH A 186 686 304 HOH HOH . D 3 HOH A 187 687 70 HOH HOH . D 3 HOH A 188 688 103 HOH HOH . D 3 HOH A 189 689 288 HOH HOH . D 3 HOH A 190 690 303 HOH HOH . D 3 HOH A 191 691 193 HOH HOH . D 3 HOH A 192 692 59 HOH HOH . D 3 HOH A 193 693 20 HOH HOH . D 3 HOH A 194 694 117 HOH HOH . D 3 HOH A 195 695 55 HOH HOH . D 3 HOH A 196 696 65 HOH HOH . D 3 HOH A 197 697 152 HOH HOH . D 3 HOH A 198 698 161 HOH HOH . D 3 HOH A 199 699 312 HOH HOH . D 3 HOH A 200 700 194 HOH HOH . D 3 HOH A 201 701 337 HOH HOH . D 3 HOH A 202 702 317 HOH HOH . D 3 HOH A 203 703 151 HOH HOH . D 3 HOH A 204 704 90 HOH HOH . D 3 HOH A 205 705 97 HOH HOH . D 3 HOH A 206 706 107 HOH HOH . D 3 HOH A 207 707 150 HOH HOH . D 3 HOH A 208 708 40 HOH HOH . D 3 HOH A 209 709 256 HOH HOH . D 3 HOH A 210 710 39 HOH HOH . D 3 HOH A 211 711 344 HOH HOH . D 3 HOH A 212 712 205 HOH HOH . D 3 HOH A 213 713 176 HOH HOH . D 3 HOH A 214 714 186 HOH HOH . D 3 HOH A 215 715 96 HOH HOH . D 3 HOH A 216 716 213 HOH HOH . D 3 HOH A 217 717 167 HOH HOH . D 3 HOH A 218 718 139 HOH HOH . D 3 HOH A 219 719 158 HOH HOH . D 3 HOH A 220 720 27 HOH HOH . D 3 HOH A 221 721 110 HOH HOH . D 3 HOH A 222 722 163 HOH HOH . D 3 HOH A 223 723 86 HOH HOH . D 3 HOH A 224 724 125 HOH HOH . D 3 HOH A 225 725 23 HOH HOH . D 3 HOH A 226 726 78 HOH HOH . D 3 HOH A 227 727 272 HOH HOH . D 3 HOH A 228 728 127 HOH HOH . D 3 HOH A 229 729 157 HOH HOH . D 3 HOH A 230 730 119 HOH HOH . D 3 HOH A 231 731 46 HOH HOH . D 3 HOH A 232 732 282 HOH HOH . D 3 HOH A 233 733 106 HOH HOH . D 3 HOH A 234 734 124 HOH HOH . D 3 HOH A 235 735 1 HOH HOH . D 3 HOH A 236 736 130 HOH HOH . D 3 HOH A 237 737 50 HOH HOH . D 3 HOH A 238 738 287 HOH HOH . D 3 HOH A 239 739 21 HOH HOH . D 3 HOH A 240 740 215 HOH HOH . D 3 HOH A 241 741 323 HOH HOH . D 3 HOH A 242 742 311 HOH HOH . D 3 HOH A 243 743 35 HOH HOH . D 3 HOH A 244 744 251 HOH HOH . D 3 HOH A 245 745 248 HOH HOH . D 3 HOH A 246 746 254 HOH HOH . D 3 HOH A 247 747 305 HOH HOH . D 3 HOH A 248 748 123 HOH HOH . D 3 HOH A 249 749 180 HOH HOH . D 3 HOH A 250 750 293 HOH HOH . D 3 HOH A 251 751 239 HOH HOH . D 3 HOH A 252 752 313 HOH HOH . D 3 HOH A 253 753 240 HOH HOH . D 3 HOH A 254 754 113 HOH HOH . D 3 HOH A 255 755 102 HOH HOH . D 3 HOH A 256 756 328 HOH HOH . D 3 HOH A 257 757 135 HOH HOH . D 3 HOH A 258 758 200 HOH HOH . D 3 HOH A 259 759 87 HOH HOH . D 3 HOH A 260 760 333 HOH HOH . D 3 HOH A 261 761 327 HOH HOH . D 3 HOH A 262 762 360 HOH HOH . D 3 HOH A 263 763 356 HOH HOH . D 3 HOH A 264 764 92 HOH HOH . D 3 HOH A 265 765 259 HOH HOH . D 3 HOH A 266 766 349 HOH HOH . D 3 HOH A 267 767 138 HOH HOH . D 3 HOH A 268 768 202 HOH HOH . D 3 HOH A 269 769 154 HOH HOH . D 3 HOH A 270 770 325 HOH HOH . D 3 HOH A 271 771 330 HOH HOH . D 3 HOH A 272 772 197 HOH HOH . D 3 HOH A 273 773 168 HOH HOH . D 3 HOH A 274 774 225 HOH HOH . D 3 HOH A 275 775 279 HOH HOH . D 3 HOH A 276 776 245 HOH HOH . D 3 HOH A 277 777 351 HOH HOH . D 3 HOH A 278 778 352 HOH HOH . D 3 HOH A 279 779 236 HOH HOH . D 3 HOH A 280 780 153 HOH HOH . D 3 HOH A 281 781 185 HOH HOH . D 3 HOH A 282 782 49 HOH HOH . D 3 HOH A 283 783 355 HOH HOH . D 3 HOH A 284 784 326 HOH HOH . D 3 HOH A 285 785 310 HOH HOH . D 3 HOH A 286 786 341 HOH HOH . D 3 HOH A 287 787 281 HOH HOH . D 3 HOH A 288 788 84 HOH HOH . D 3 HOH A 289 789 118 HOH HOH . D 3 HOH A 290 790 216 HOH HOH . D 3 HOH A 291 791 343 HOH HOH . D 3 HOH A 292 792 336 HOH HOH . D 3 HOH A 293 793 347 HOH HOH . D 3 HOH A 294 794 350 HOH HOH . D 3 HOH A 295 795 348 HOH HOH . D 3 HOH A 296 796 286 HOH HOH . D 3 HOH A 297 797 88 HOH HOH . D 3 HOH A 298 798 345 HOH HOH . D 3 HOH A 299 799 229 HOH HOH . D 3 HOH A 300 800 145 HOH HOH . D 3 HOH A 301 801 232 HOH HOH . D 3 HOH A 302 802 175 HOH HOH . D 3 HOH A 303 803 346 HOH HOH . D 3 HOH A 304 804 268 HOH HOH . D 3 HOH A 305 805 128 HOH HOH . D 3 HOH A 306 806 204 HOH HOH . D 3 HOH A 307 807 261 HOH HOH . D 3 HOH A 308 808 278 HOH HOH . D 3 HOH A 309 809 320 HOH HOH . D 3 HOH A 310 810 274 HOH HOH . D 3 HOH A 311 811 173 HOH HOH . D 3 HOH A 312 812 98 HOH HOH . D 3 HOH A 313 813 322 HOH HOH . D 3 HOH A 314 814 249 HOH HOH . D 3 HOH A 315 815 359 HOH HOH . D 3 HOH A 316 816 244 HOH HOH . D 3 HOH A 317 817 335 HOH HOH . D 3 HOH A 318 818 214 HOH HOH . D 3 HOH A 319 819 265 HOH HOH . D 3 HOH A 320 820 275 HOH HOH . D 3 HOH A 321 821 222 HOH HOH . D 3 HOH A 322 822 100 HOH HOH . D 3 HOH A 323 823 284 HOH HOH . D 3 HOH A 324 824 276 HOH HOH . D 3 HOH A 325 825 318 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 35.245 13.43 8.691 1 52.19 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 2 36.622 13.211 8.436 1 59.54 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 2 34.634 14.433 7.722 1 50.03 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 2 33.222 14.385 7.877 1 59.74 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 2 35.115 15.837 8.027 1 53.67 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 2 35.582 16.531 6.874 1 42.21 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #