data_5ECC # _model_server_result.job_id VlcGm6UrPmfMGjj9I1BYng _model_server_result.datetime_utc '2024-11-14 04:57:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ecc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5ECC # _exptl.entry_id 5ECC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-{3-[2-methoxy-5-(pyridin-4-yl)phenyl]prop-1-yn-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ECC _cell.length_a 76.199 _cell.length_b 76.199 _cell.length_c 113.784 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ECC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_674 x-y+1,-y+2,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 131.980539 -37.928 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 I N N ? 3 J N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 105 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 104 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id M _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 206 _struct_conn.ptnr2_symmetry 5_674 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.989 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H21 N5 O' _chem_comp.formula_weight 359.424 _chem_comp.id 6DR _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-{3-[2-methoxy-5-(pyridin-4-yl)phenyl]prop-1-yn-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 6DR doub 1 n y C6 N1 6DR sing 2 n y N3 C2 6DR sing 3 n y C2 NAC 6DR sing 4 n n C4 N3 6DR doub 5 n y CAN C4 6DR sing 6 n n C4 C5 6DR sing 7 n y CAF C5 6DR sing 8 n n C5 C6 6DR doub 9 n y C6 NAD 6DR sing 10 n n CAA CAN 6DR sing 11 n n CAA HAA 6DR sing 12 n n CAA HAAA 6DR sing 13 n n CAA HAAB 6DR sing 14 n n OAS CAB 6DR sing 15 n n CAB HAB 6DR sing 16 n n CAB HABA 6DR sing 17 n n CAB HABB 6DR sing 18 n n NAC HNAC 6DR sing 19 n n NAC HNAA 6DR sing 20 n n NAD HNAD 6DR sing 21 n n NAD HNAB 6DR sing 22 n n CAO CAE 6DR sing 23 n n CAE CAF 6DR trip 24 n n CAI CAG 6DR doub 25 n y CAG NAP 6DR sing 26 n y CAG HAG 6DR sing 27 n n NAP CAH 6DR doub 28 n y CAJ CAH 6DR sing 29 n y CAH HAH 6DR sing 30 n n CAI CAV 6DR sing 31 n y CAI HAI 6DR sing 32 n n CAV CAJ 6DR doub 33 n y CAJ HAJ 6DR sing 34 n n CAL CAK 6DR doub 35 n y CAK CAW 6DR sing 36 n y CAK HAK 6DR sing 37 n n CAL CAZ 6DR sing 38 n y CAL HAL 6DR sing 39 n n CAW CAM 6DR doub 40 n y CAX CAM 6DR sing 41 n y CAM HAM 6DR sing 42 n n CAN HAN 6DR sing 43 n n CAN HANA 6DR sing 44 n n CAX CAO 6DR sing 45 n n CAO HAO 6DR sing 46 n n CAO HAOA 6DR sing 47 n n OAS CAZ 6DR sing 48 n n CAW CAV 6DR sing 49 n n CAZ CAX 6DR doub 50 n y # _atom_sites.entry_id 5ECC _atom_sites.fract_transf_matrix[1][1] 0.013124 _atom_sites.fract_transf_matrix[1][2] 0.007577 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 207 NAP NAP . D 3 6DR A 1 202 1 6DR DRG . E 3 6DR A 1 203 2 6DR DRG . F 4 GOL A 1 204 221 GOL GOL . G 5 CA A 1 205 3 CA CA . H 2 NAP B 1 201 208 NAP NAP . I 3 6DR B 1 202 3 6DR DRG . J 3 6DR B 1 203 4 6DR DRG . K 4 GOL B 1 204 222 GOL GOL . L 5 CA B 1 205 4 CA CA . M 5 CA B 1 206 5 CA CA . N 6 HOH A 1 301 141 HOH HOH . N 6 HOH A 2 302 122 HOH HOH . N 6 HOH A 3 303 67 HOH HOH . N 6 HOH A 4 304 163 HOH HOH . N 6 HOH A 5 305 138 HOH HOH . N 6 HOH A 6 306 43 HOH HOH . N 6 HOH A 7 307 123 HOH HOH . N 6 HOH A 8 308 137 HOH HOH . N 6 HOH A 9 309 173 HOH HOH . N 6 HOH A 10 310 38 HOH HOH . N 6 HOH A 11 311 140 HOH HOH . N 6 HOH A 12 312 5 HOH HOH . N 6 HOH A 13 313 161 HOH HOH . N 6 HOH A 14 314 31 HOH HOH . N 6 HOH A 15 315 75 HOH HOH . N 6 HOH A 16 316 12 HOH HOH . N 6 HOH A 17 317 144 HOH HOH . N 6 HOH A 18 318 58 HOH HOH . N 6 HOH A 19 319 50 HOH HOH . N 6 HOH A 20 320 168 HOH HOH . N 6 HOH A 21 321 167 HOH HOH . N 6 HOH A 22 322 33 HOH HOH . N 6 HOH A 23 323 45 HOH HOH . N 6 HOH A 24 324 59 HOH HOH . N 6 HOH A 25 325 27 HOH HOH . N 6 HOH A 26 326 62 HOH HOH . N 6 HOH A 27 327 16 HOH HOH . N 6 HOH A 28 328 32 HOH HOH . N 6 HOH A 29 329 142 HOH HOH . N 6 HOH A 30 330 47 HOH HOH . N 6 HOH A 31 331 64 HOH HOH . N 6 HOH A 32 332 14 HOH HOH . N 6 HOH A 33 333 1 HOH HOH . N 6 HOH A 34 334 3 HOH HOH . N 6 HOH A 35 335 36 HOH HOH . N 6 HOH A 36 336 10 HOH HOH . N 6 HOH A 37 337 82 HOH HOH . N 6 HOH A 38 338 20 HOH HOH . N 6 HOH A 39 339 39 HOH HOH . N 6 HOH A 40 340 78 HOH HOH . N 6 HOH A 41 341 145 HOH HOH . N 6 HOH A 42 342 54 HOH HOH . N 6 HOH A 43 343 26 HOH HOH . N 6 HOH A 44 344 95 HOH HOH . N 6 HOH A 45 345 83 HOH HOH . N 6 HOH A 46 346 110 HOH HOH . N 6 HOH A 47 347 135 HOH HOH . N 6 HOH A 48 348 44 HOH HOH . N 6 HOH A 49 349 9 HOH HOH . N 6 HOH A 50 350 55 HOH HOH . N 6 HOH A 51 351 162 HOH HOH . N 6 HOH A 52 352 170 HOH HOH . N 6 HOH A 53 353 174 HOH HOH . N 6 HOH A 54 354 79 HOH HOH . N 6 HOH A 55 355 109 HOH HOH . N 6 HOH A 56 356 19 HOH HOH . N 6 HOH A 57 357 34 HOH HOH . N 6 HOH A 58 358 81 HOH HOH . N 6 HOH A 59 359 52 HOH HOH . N 6 HOH A 60 360 24 HOH HOH . N 6 HOH A 61 361 17 HOH HOH . N 6 HOH A 62 362 112 HOH HOH . N 6 HOH A 63 363 80 HOH HOH . N 6 HOH A 64 364 63 HOH HOH . N 6 HOH A 65 365 111 HOH HOH . N 6 HOH A 66 366 143 HOH HOH . N 6 HOH A 67 367 103 HOH HOH . N 6 HOH A 68 368 133 HOH HOH . N 6 HOH A 69 369 108 HOH HOH . N 6 HOH A 70 370 136 HOH HOH . N 6 HOH A 71 371 66 HOH HOH . N 6 HOH A 72 372 42 HOH HOH . N 6 HOH A 73 373 86 HOH HOH . O 6 HOH B 1 301 105 HOH HOH . O 6 HOH B 2 302 113 HOH HOH . O 6 HOH B 3 303 93 HOH HOH . O 6 HOH B 4 304 116 HOH HOH . O 6 HOH B 5 305 100 HOH HOH . O 6 HOH B 6 306 150 HOH HOH . O 6 HOH B 7 307 96 HOH HOH . O 6 HOH B 8 308 41 HOH HOH . O 6 HOH B 9 309 165 HOH HOH . O 6 HOH B 10 310 29 HOH HOH . O 6 HOH B 11 311 157 HOH HOH . O 6 HOH B 12 312 71 HOH HOH . O 6 HOH B 13 313 127 HOH HOH . O 6 HOH B 14 314 125 HOH HOH . O 6 HOH B 15 315 169 HOH HOH . O 6 HOH B 16 316 107 HOH HOH . O 6 HOH B 17 317 120 HOH HOH . O 6 HOH B 18 318 40 HOH HOH . O 6 HOH B 19 319 156 HOH HOH . O 6 HOH B 20 320 98 HOH HOH . O 6 HOH B 21 321 146 HOH HOH . O 6 HOH B 22 322 22 HOH HOH . O 6 HOH B 23 323 160 HOH HOH . O 6 HOH B 24 324 18 HOH HOH . O 6 HOH B 25 325 175 HOH HOH . O 6 HOH B 26 326 73 HOH HOH . O 6 HOH B 27 327 148 HOH HOH . O 6 HOH B 28 328 30 HOH HOH . O 6 HOH B 29 329 49 HOH HOH . O 6 HOH B 30 330 8 HOH HOH . O 6 HOH B 31 331 7 HOH HOH . O 6 HOH B 32 332 128 HOH HOH . O 6 HOH B 33 333 102 HOH HOH . O 6 HOH B 34 334 159 HOH HOH . O 6 HOH B 35 335 132 HOH HOH . O 6 HOH B 36 336 23 HOH HOH . O 6 HOH B 37 337 2 HOH HOH . O 6 HOH B 38 338 74 HOH HOH . O 6 HOH B 39 339 15 HOH HOH . O 6 HOH B 40 340 91 HOH HOH . O 6 HOH B 41 341 90 HOH HOH . O 6 HOH B 42 342 114 HOH HOH . O 6 HOH B 43 343 85 HOH HOH . O 6 HOH B 44 344 69 HOH HOH . O 6 HOH B 45 345 21 HOH HOH . O 6 HOH B 46 346 121 HOH HOH . O 6 HOH B 47 347 126 HOH HOH . O 6 HOH B 48 348 56 HOH HOH . O 6 HOH B 49 349 68 HOH HOH . O 6 HOH B 50 350 88 HOH HOH . O 6 HOH B 51 351 171 HOH HOH . O 6 HOH B 52 352 172 HOH HOH . O 6 HOH B 53 353 35 HOH HOH . O 6 HOH B 54 354 13 HOH HOH . O 6 HOH B 55 355 11 HOH HOH . O 6 HOH B 56 356 70 HOH HOH . O 6 HOH B 57 357 153 HOH HOH . O 6 HOH B 58 358 115 HOH HOH . O 6 HOH B 59 359 57 HOH HOH . O 6 HOH B 60 360 92 HOH HOH . O 6 HOH B 61 361 25 HOH HOH . O 6 HOH B 62 362 28 HOH HOH . O 6 HOH B 63 363 37 HOH HOH . O 6 HOH B 64 364 53 HOH HOH . O 6 HOH B 65 365 94 HOH HOH . O 6 HOH B 66 366 4 HOH HOH . O 6 HOH B 67 367 130 HOH HOH . O 6 HOH B 68 368 61 HOH HOH . O 6 HOH B 69 369 46 HOH HOH . O 6 HOH B 70 370 131 HOH HOH . O 6 HOH B 71 371 6 HOH HOH . O 6 HOH B 72 372 106 HOH HOH . O 6 HOH B 73 373 76 HOH HOH . O 6 HOH B 74 374 152 HOH HOH . O 6 HOH B 75 375 151 HOH HOH . O 6 HOH B 76 376 99 HOH HOH . O 6 HOH B 77 377 72 HOH HOH . O 6 HOH B 78 378 97 HOH HOH . O 6 HOH B 79 379 117 HOH HOH . O 6 HOH B 80 380 101 HOH HOH . O 6 HOH B 81 381 154 HOH HOH . O 6 HOH B 82 382 166 HOH HOH . O 6 HOH B 83 383 77 HOH HOH . O 6 HOH B 84 384 147 HOH HOH . O 6 HOH B 85 385 48 HOH HOH . O 6 HOH B 86 386 89 HOH HOH . O 6 HOH B 87 387 124 HOH HOH . O 6 HOH B 88 388 129 HOH HOH . O 6 HOH B 89 389 155 HOH HOH . O 6 HOH B 90 390 149 HOH HOH . O 6 HOH B 91 391 164 HOH HOH . O 6 HOH B 92 392 139 HOH HOH . O 6 HOH B 93 393 118 HOH HOH . O 6 HOH B 94 394 104 HOH HOH . O 6 HOH B 95 395 51 HOH HOH . O 6 HOH B 96 396 158 HOH HOH . O 6 HOH B 97 397 65 HOH HOH . O 6 HOH B 98 398 60 HOH HOH . O 6 HOH B 99 399 134 HOH HOH . O 6 HOH B 100 400 84 HOH HOH . O 6 HOH B 101 401 119 HOH HOH . O 6 HOH B 102 402 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 6DR . A . D 3 2.836 29.233 -20.686 0.57 34.37 ? N1 6DR 202 A 1 HETATM 2 C C2 6DR . A . D 3 2.984 30.026 -21.758 0.57 32.47 ? C2 6DR 202 A 1 HETATM 3 N N3 6DR . A . D 3 3.598 29.578 -22.874 0.57 31.28 ? N3 6DR 202 A 1 HETATM 4 C C4 6DR . A . D 3 4.08 28.325 -22.955 0.57 32.38 ? C4 6DR 202 A 1 HETATM 5 C C5 6DR . A . D 3 3.943 27.492 -21.85 0.57 34.81 ? C5 6DR 202 A 1 HETATM 6 C C6 6DR . A . D 3 3.3 27.98 -20.721 0.57 33.43 ? C6 6DR 202 A 1 HETATM 7 C CAA 6DR . A . D 3 6.009 28.67 -24.374 0.57 30.6 ? CAA 6DR 202 A 1 HETATM 8 C CAB 6DR . A . D 3 4.829 20.343 -24.034 0.57 41.41 ? CAB 6DR 202 A 1 HETATM 9 N NAC 6DR . A . D 3 2.516 31.269 -21.701 0.57 31.25 ? NAC 6DR 202 A 1 HETATM 10 N NAD 6DR . A . D 3 3.19 27.141 -19.693 0.57 32.18 ? NAD 6DR 202 A 1 HETATM 11 C CAE 6DR . A . D 3 4.811 24.985 -21.757 0.57 37.93 ? CAE 6DR 202 A 1 HETATM 12 C CAF 6DR . A . D 3 4.424 26.146 -21.831 0.57 34.53 ? CAF 6DR 202 A 1 HETATM 13 C CAG 6DR . A . D 3 11.348 25.3 -25.073 0.57 52.51 ? CAG 6DR 202 A 1 HETATM 14 C CAH 6DR . A . D 3 10.092 27.036 -23.932 0.57 47.01 ? CAH 6DR 202 A 1 HETATM 15 C CAI 6DR . A . D 3 10.319 24.396 -24.827 0.57 50.03 ? CAI 6DR 202 A 1 HETATM 16 C CAJ 6DR . A . D 3 9.074 26.12 -23.692 0.57 45.86 ? CAJ 6DR 202 A 1 HETATM 17 C CAK 6DR . A . D 3 8.063 22.713 -24.594 0.57 40.91 ? CAK 6DR 202 A 1 HETATM 18 C CAL 6DR . A . D 3 7.034 21.818 -24.32 0.57 40.1 ? CAL 6DR 202 A 1 HETATM 19 C CAM 6DR . A . D 3 7.226 24.198 -22.888 0.57 43.09 ? CAM 6DR 202 A 1 HETATM 20 C CAN 6DR . A . D 3 4.714 27.877 -24.126 0.57 29.49 ? CAN 6DR 202 A 1 HETATM 21 C CAO 6DR . A . D 3 5.261 23.59 -21.624 0.57 43.22 ? CAO 6DR 202 A 1 HETATM 22 N NAP 6DR . A . D 3 11.239 26.627 -24.624 0.57 48.24 ? NAP 6DR 202 A 1 HETATM 23 O OAS 6DR . A . D 3 5.07 21.296 -22.991 0.57 44.29 ? OAS 6DR 202 A 1 HETATM 24 C CAV 6DR . A . D 3 9.181 24.806 -24.14 0.57 44.48 ? CAV 6DR 202 A 1 HETATM 25 C CAW 6DR . A . D 3 8.156 23.903 -23.879 0.57 42.36 ? CAW 6DR 202 A 1 HETATM 26 C CAX 6DR . A . D 3 6.197 23.303 -22.606 0.57 45.01 ? CAX 6DR 202 A 1 HETATM 27 C CAZ 6DR . A . D 3 6.106 22.118 -23.324 0.57 47.06 ? CAZ 6DR 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #