data_5ECS # _model_server_result.job_id O4hCgkKpOgJtYiNsWPkroQ _model_server_result.datetime_utc '2024-11-22 04:25:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ecs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5ECS # _exptl.entry_id 5ECS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.5 _cell.angle_gamma 90 _cell.entry_id 5ECS _cell.length_a 90.383 _cell.length_b 58.893 _cell.length_c 97.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ECS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2 B,D,F 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 54.701284 0 192.521311 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 72.542142 0 96.260655 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 5ECS _atom_sites.fract_transf_matrix[1][1] 0.011064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH A 1 301 301 GSH GSH . D 2 GSH B 1 301 301 GSH GSH . E 3 HOH A 1 401 429 HOH HOH . E 3 HOH A 2 402 502 HOH HOH . E 3 HOH A 3 403 499 HOH HOH . E 3 HOH A 4 404 505 HOH HOH . E 3 HOH A 5 405 467 HOH HOH . E 3 HOH A 6 406 480 HOH HOH . E 3 HOH A 7 407 526 HOH HOH . E 3 HOH A 8 408 444 HOH HOH . E 3 HOH A 9 409 431 HOH HOH . E 3 HOH A 10 410 432 HOH HOH . E 3 HOH A 11 411 437 HOH HOH . E 3 HOH A 12 412 428 HOH HOH . E 3 HOH A 13 413 455 HOH HOH . E 3 HOH A 14 414 474 HOH HOH . E 3 HOH A 15 415 493 HOH HOH . E 3 HOH A 16 416 458 HOH HOH . E 3 HOH A 17 417 461 HOH HOH . E 3 HOH A 18 418 409 HOH HOH . E 3 HOH A 19 419 494 HOH HOH . E 3 HOH A 20 420 411 HOH HOH . E 3 HOH A 21 421 492 HOH HOH . E 3 HOH A 22 422 438 HOH HOH . E 3 HOH A 23 423 524 HOH HOH . E 3 HOH A 24 424 405 HOH HOH . E 3 HOH A 25 425 515 HOH HOH . E 3 HOH A 26 426 471 HOH HOH . E 3 HOH A 27 427 402 HOH HOH . E 3 HOH A 28 428 422 HOH HOH . E 3 HOH A 29 429 420 HOH HOH . E 3 HOH A 30 430 413 HOH HOH . E 3 HOH A 31 431 498 HOH HOH . E 3 HOH A 32 432 433 HOH HOH . E 3 HOH A 33 433 468 HOH HOH . E 3 HOH A 34 434 513 HOH HOH . E 3 HOH A 35 435 410 HOH HOH . E 3 HOH A 36 436 500 HOH HOH . E 3 HOH A 37 437 415 HOH HOH . E 3 HOH A 38 438 407 HOH HOH . E 3 HOH A 39 439 404 HOH HOH . E 3 HOH A 40 440 451 HOH HOH . E 3 HOH A 41 441 440 HOH HOH . E 3 HOH A 42 442 472 HOH HOH . E 3 HOH A 43 443 495 HOH HOH . E 3 HOH A 44 444 401 HOH HOH . E 3 HOH A 45 445 416 HOH HOH . E 3 HOH A 46 446 450 HOH HOH . E 3 HOH A 47 447 516 HOH HOH . E 3 HOH A 48 448 419 HOH HOH . E 3 HOH A 49 449 511 HOH HOH . E 3 HOH A 50 450 462 HOH HOH . E 3 HOH A 51 451 436 HOH HOH . E 3 HOH A 52 452 460 HOH HOH . E 3 HOH A 53 453 501 HOH HOH . E 3 HOH A 54 454 406 HOH HOH . E 3 HOH A 55 455 414 HOH HOH . E 3 HOH A 56 456 423 HOH HOH . E 3 HOH A 57 457 442 HOH HOH . E 3 HOH A 58 458 490 HOH HOH . E 3 HOH A 59 459 459 HOH HOH . E 3 HOH A 60 460 445 HOH HOH . E 3 HOH A 61 461 446 HOH HOH . E 3 HOH A 62 462 447 HOH HOH . E 3 HOH A 63 463 469 HOH HOH . E 3 HOH A 64 464 456 HOH HOH . E 3 HOH A 65 465 448 HOH HOH . E 3 HOH A 66 466 417 HOH HOH . E 3 HOH A 67 467 465 HOH HOH . E 3 HOH A 68 468 483 HOH HOH . E 3 HOH A 69 469 449 HOH HOH . E 3 HOH A 70 470 476 HOH HOH . E 3 HOH A 71 471 457 HOH HOH . E 3 HOH A 72 472 496 HOH HOH . E 3 HOH A 73 473 430 HOH HOH . E 3 HOH A 74 474 426 HOH HOH . E 3 HOH A 75 475 454 HOH HOH . E 3 HOH A 76 476 503 HOH HOH . E 3 HOH A 77 477 408 HOH HOH . E 3 HOH A 78 478 512 HOH HOH . E 3 HOH A 79 479 475 HOH HOH . E 3 HOH A 80 480 427 HOH HOH . E 3 HOH A 81 481 477 HOH HOH . E 3 HOH A 82 482 403 HOH HOH . E 3 HOH A 83 483 528 HOH HOH . E 3 HOH A 84 484 478 HOH HOH . E 3 HOH A 85 485 509 HOH HOH . E 3 HOH A 86 486 507 HOH HOH . E 3 HOH A 87 487 484 HOH HOH . E 3 HOH A 88 488 441 HOH HOH . E 3 HOH A 89 489 412 HOH HOH . E 3 HOH A 90 490 497 HOH HOH . E 3 HOH A 91 491 518 HOH HOH . E 3 HOH A 92 492 439 HOH HOH . E 3 HOH A 93 493 424 HOH HOH . E 3 HOH A 94 494 473 HOH HOH . E 3 HOH A 95 495 452 HOH HOH . E 3 HOH A 96 496 464 HOH HOH . E 3 HOH A 97 497 521 HOH HOH . E 3 HOH A 98 498 486 HOH HOH . E 3 HOH A 99 499 463 HOH HOH . E 3 HOH A 100 500 421 HOH HOH . E 3 HOH A 101 501 435 HOH HOH . E 3 HOH A 102 502 489 HOH HOH . E 3 HOH A 103 503 466 HOH HOH . E 3 HOH A 104 504 453 HOH HOH . E 3 HOH A 105 505 418 HOH HOH . E 3 HOH A 106 506 470 HOH HOH . E 3 HOH A 107 507 479 HOH HOH . E 3 HOH A 108 508 525 HOH HOH . E 3 HOH A 109 509 425 HOH HOH . E 3 HOH A 110 510 510 HOH HOH . E 3 HOH A 111 511 520 HOH HOH . E 3 HOH A 112 512 535 HOH HOH . E 3 HOH A 113 513 482 HOH HOH . E 3 HOH A 114 514 523 HOH HOH . E 3 HOH A 115 515 443 HOH HOH . E 3 HOH A 116 516 485 HOH HOH . E 3 HOH A 117 517 536 HOH HOH . E 3 HOH A 118 518 530 HOH HOH . E 3 HOH A 119 519 508 HOH HOH . E 3 HOH A 120 520 529 HOH HOH . E 3 HOH A 121 521 519 HOH HOH . E 3 HOH A 122 522 527 HOH HOH . E 3 HOH A 123 523 537 HOH HOH . E 3 HOH A 124 524 534 HOH HOH . E 3 HOH A 125 525 434 HOH HOH . E 3 HOH A 126 526 532 HOH HOH . E 3 HOH A 127 527 487 HOH HOH . E 3 HOH A 128 528 517 HOH HOH . E 3 HOH A 129 529 504 HOH HOH . E 3 HOH A 130 530 499 HOH HOH . E 3 HOH A 131 531 538 HOH HOH . E 3 HOH A 132 532 502 HOH HOH . E 3 HOH A 133 533 506 HOH HOH . E 3 HOH A 134 534 488 HOH HOH . E 3 HOH A 135 535 481 HOH HOH . E 3 HOH A 136 536 531 HOH HOH . E 3 HOH A 137 537 533 HOH HOH . E 3 HOH A 138 538 514 HOH HOH . E 3 HOH A 139 539 539 HOH HOH . E 3 HOH A 140 540 522 HOH HOH . E 3 HOH A 141 541 491 HOH HOH . F 3 HOH B 1 401 444 HOH HOH . F 3 HOH B 2 402 514 HOH HOH . F 3 HOH B 3 403 507 HOH HOH . F 3 HOH B 4 404 505 HOH HOH . F 3 HOH B 5 405 442 HOH HOH . F 3 HOH B 6 406 436 HOH HOH . F 3 HOH B 7 407 429 HOH HOH . F 3 HOH B 8 408 485 HOH HOH . F 3 HOH B 9 409 419 HOH HOH . F 3 HOH B 10 410 434 HOH HOH . F 3 HOH B 11 411 448 HOH HOH . F 3 HOH B 12 412 406 HOH HOH . F 3 HOH B 13 413 407 HOH HOH . F 3 HOH B 14 414 411 HOH HOH . F 3 HOH B 15 415 476 HOH HOH . F 3 HOH B 16 416 440 HOH HOH . F 3 HOH B 17 417 455 HOH HOH . F 3 HOH B 18 418 475 HOH HOH . F 3 HOH B 19 419 486 HOH HOH . F 3 HOH B 20 420 414 HOH HOH . F 3 HOH B 21 421 483 HOH HOH . F 3 HOH B 22 422 424 HOH HOH . F 3 HOH B 23 423 467 HOH HOH . F 3 HOH B 24 424 401 HOH HOH . F 3 HOH B 25 425 482 HOH HOH . F 3 HOH B 26 426 427 HOH HOH . F 3 HOH B 27 427 435 HOH HOH . F 3 HOH B 28 428 478 HOH HOH . F 3 HOH B 29 429 415 HOH HOH . F 3 HOH B 30 430 447 HOH HOH . F 3 HOH B 31 431 521 HOH HOH . F 3 HOH B 32 432 417 HOH HOH . F 3 HOH B 33 433 404 HOH HOH . F 3 HOH B 34 434 480 HOH HOH . F 3 HOH B 35 435 443 HOH HOH . F 3 HOH B 36 436 453 HOH HOH . F 3 HOH B 37 437 405 HOH HOH . F 3 HOH B 38 438 510 HOH HOH . F 3 HOH B 39 439 422 HOH HOH . F 3 HOH B 40 440 439 HOH HOH . F 3 HOH B 41 441 445 HOH HOH . F 3 HOH B 42 442 402 HOH HOH . F 3 HOH B 43 443 433 HOH HOH . F 3 HOH B 44 444 410 HOH HOH . F 3 HOH B 45 445 437 HOH HOH . F 3 HOH B 46 446 491 HOH HOH . F 3 HOH B 47 447 503 HOH HOH . F 3 HOH B 48 448 472 HOH HOH . F 3 HOH B 49 449 413 HOH HOH . F 3 HOH B 50 450 463 HOH HOH . F 3 HOH B 51 451 512 HOH HOH . F 3 HOH B 52 452 441 HOH HOH . F 3 HOH B 53 453 431 HOH HOH . F 3 HOH B 54 454 412 HOH HOH . F 3 HOH B 55 455 458 HOH HOH . F 3 HOH B 56 456 495 HOH HOH . F 3 HOH B 57 457 473 HOH HOH . F 3 HOH B 58 458 469 HOH HOH . F 3 HOH B 59 459 409 HOH HOH . F 3 HOH B 60 460 423 HOH HOH . F 3 HOH B 61 461 474 HOH HOH . F 3 HOH B 62 462 459 HOH HOH . F 3 HOH B 63 463 470 HOH HOH . F 3 HOH B 64 464 460 HOH HOH . F 3 HOH B 65 465 489 HOH HOH . F 3 HOH B 66 466 408 HOH HOH . F 3 HOH B 67 467 456 HOH HOH . F 3 HOH B 68 468 450 HOH HOH . F 3 HOH B 69 469 454 HOH HOH . F 3 HOH B 70 470 493 HOH HOH . F 3 HOH B 71 471 516 HOH HOH . F 3 HOH B 72 472 494 HOH HOH . F 3 HOH B 73 473 513 HOH HOH . F 3 HOH B 74 474 403 HOH HOH . F 3 HOH B 75 475 416 HOH HOH . F 3 HOH B 76 476 504 HOH HOH . F 3 HOH B 77 477 418 HOH HOH . F 3 HOH B 78 478 500 HOH HOH . F 3 HOH B 79 479 430 HOH HOH . F 3 HOH B 80 480 461 HOH HOH . F 3 HOH B 81 481 452 HOH HOH . F 3 HOH B 82 482 426 HOH HOH . F 3 HOH B 83 483 420 HOH HOH . F 3 HOH B 84 484 446 HOH HOH . F 3 HOH B 85 485 425 HOH HOH . F 3 HOH B 86 486 497 HOH HOH . F 3 HOH B 87 487 457 HOH HOH . F 3 HOH B 88 488 438 HOH HOH . F 3 HOH B 89 489 462 HOH HOH . F 3 HOH B 90 490 468 HOH HOH . F 3 HOH B 91 491 508 HOH HOH . F 3 HOH B 92 492 511 HOH HOH . F 3 HOH B 93 493 465 HOH HOH . F 3 HOH B 94 494 492 HOH HOH . F 3 HOH B 95 495 464 HOH HOH . F 3 HOH B 96 496 496 HOH HOH . F 3 HOH B 97 497 421 HOH HOH . F 3 HOH B 98 498 498 HOH HOH . F 3 HOH B 99 499 518 HOH HOH . F 3 HOH B 100 500 471 HOH HOH . F 3 HOH B 101 501 432 HOH HOH . F 3 HOH B 102 502 449 HOH HOH . F 3 HOH B 103 503 451 HOH HOH . F 3 HOH B 104 504 509 HOH HOH . F 3 HOH B 105 505 477 HOH HOH . F 3 HOH B 106 506 524 HOH HOH . F 3 HOH B 107 507 520 HOH HOH . F 3 HOH B 108 508 487 HOH HOH . F 3 HOH B 109 509 527 HOH HOH . F 3 HOH B 110 510 490 HOH HOH . F 3 HOH B 111 511 484 HOH HOH . F 3 HOH B 112 512 525 HOH HOH . F 3 HOH B 113 513 522 HOH HOH . F 3 HOH B 114 514 529 HOH HOH . F 3 HOH B 115 515 528 HOH HOH . F 3 HOH B 116 516 501 HOH HOH . F 3 HOH B 117 517 515 HOH HOH . F 3 HOH B 118 518 428 HOH HOH . F 3 HOH B 119 519 466 HOH HOH . F 3 HOH B 120 520 479 HOH HOH . F 3 HOH B 121 521 523 HOH HOH . F 3 HOH B 122 522 506 HOH HOH . F 3 HOH B 123 523 481 HOH HOH . F 3 HOH B 124 524 526 HOH HOH . F 3 HOH B 125 525 488 HOH HOH . F 3 HOH B 126 526 517 HOH HOH . F 3 HOH B 127 527 519 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . D 2 43.759 16.67 48.67 1 23.17 ? N1 GSH 301 B 1 HETATM 2 C CA1 GSH . . . D 2 45.176 16.441 48.796 1 19.76 ? CA1 GSH 301 B 1 HETATM 3 C C1 GSH . . . D 2 45.411 15.126 49.533 1 16.14 ? C1 GSH 301 B 1 HETATM 4 O O11 GSH . . . D 2 46.445 14.51 49.219 1 17.32 ? O11 GSH 301 B 1 HETATM 5 O O12 GSH . . . D 2 44.541 14.791 50.376 1 19.49 ? O12 GSH 301 B 1 HETATM 6 C CB1 GSH . . . D 2 45.858 17.597 49.512 1 19.43 ? CB1 GSH 301 B 1 HETATM 7 C CG1 GSH . . . D 2 47.365 17.466 49.547 1 22.17 ? CG1 GSH 301 B 1 HETATM 8 C CD1 GSH . . . D 2 48.103 18.773 49.696 1 22.79 ? CD1 GSH 301 B 1 HETATM 9 O OE1 GSH . . . D 2 47.507 19.846 49.744 1 24.67 ? OE1 GSH 301 B 1 HETATM 10 N N2 GSH . . . D 2 49.498 18.709 49.777 1 21.64 ? N2 GSH 301 B 1 HETATM 11 C CA2 GSH . . . D 2 50.255 19.907 49.911 1 22.54 ? CA2 GSH 301 B 1 HETATM 12 C C2 GSH . . . D 2 51.106 20.036 48.669 1 26.52 ? C2 GSH 301 B 1 HETATM 13 O O2 GSH . . . D 2 51.565 19.051 48.132 1 22.28 ? O2 GSH 301 B 1 HETATM 14 C CB2 GSH . . . D 2 51.177 19.798 51.101 1 21.86 ? CB2 GSH 301 B 1 HETATM 15 S SG2 GSH . . . D 2 50.195 19.74 52.583 1 27.11 ? SG2 GSH 301 B 1 HETATM 16 N N3 GSH . . . D 2 51.38 21.313 48.131 1 23.24 ? N3 GSH 301 B 1 HETATM 17 C CA3 GSH . . . D 2 52.191 21.407 46.959 1 26.13 ? CA3 GSH 301 B 1 HETATM 18 C C3 GSH . . . D 2 52.471 22.855 46.652 1 33.47 ? C3 GSH 301 B 1 HETATM 19 O O31 GSH . . . D 2 53.112 23.151 45.606 1 30.76 ? O31 GSH 301 B 1 HETATM 20 O O32 GSH . . . D 2 52.048 23.727 47.464 1 35.85 ? O32 GSH 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #