data_5ECX # _model_server_result.job_id YAoXT_BoP-JRcNKrLz59Tg _model_server_result.datetime_utc '2024-11-18 03:41:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ecx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5ECX # _exptl.entry_id 5ECX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ECX _cell.length_a 76.07 _cell.length_b 76.07 _cell.length_c 113.929 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ECX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 296 n n PA O2A NAP sing 297 n n PA O5B NAP sing 298 n n PA O3 NAP sing 299 n n O2A HOA2 NAP sing 300 n n O5B C5B NAP sing 301 n n C5B C4B NAP sing 302 n n C5B H51A NAP sing 303 n n C5B H52A NAP sing 304 n n C4B O4B NAP sing 305 n n C4B C3B NAP sing 306 n n C4B H4B NAP sing 307 n n O4B C1B NAP sing 308 n n C3B O3B NAP sing 309 n n C3B C2B NAP sing 310 n n C3B H3B NAP sing 311 n n O3B HO3A NAP sing 312 n n C2B O2B NAP sing 313 n n C2B C1B NAP sing 314 n n C2B H2B NAP sing 315 n n O2B P2B NAP sing 316 n n C1B N9A NAP sing 317 n n C1B H1B NAP sing 318 n n N9A C8A NAP sing 319 n y N9A C4A NAP sing 320 n y C8A N7A NAP doub 321 n y C8A H8A NAP sing 322 n n N7A C5A NAP sing 323 n y C5A C6A NAP sing 324 n y C5A C4A NAP doub 325 n y C6A N6A NAP sing 326 n n C6A N1A NAP doub 327 n y N6A H61A NAP sing 328 n n N6A H62A NAP sing 329 n n N1A C2A NAP sing 330 n y C2A N3A NAP doub 331 n y C2A H2A NAP sing 332 n n N3A C4A NAP sing 333 n y O3 PN NAP sing 334 n n PN O1N NAP doub 335 n n PN O2N NAP sing 336 n n PN O5D NAP sing 337 n n O5D C5D NAP sing 338 n n C5D C4D NAP sing 339 n n C5D H51N NAP sing 340 n n C5D H52N NAP sing 341 n n C4D O4D NAP sing 342 n n C4D C3D NAP sing 343 n n C4D H4D NAP sing 344 n n O4D C1D NAP sing 345 n n C3D O3D NAP sing 346 n n C3D C2D NAP sing 347 n n C3D H3D NAP sing 348 n n O3D HO3N NAP sing 349 n n C2D O2D NAP sing 350 n n C2D C1D NAP sing 351 n n C2D H2D NAP sing 352 n n O2D HO2N NAP sing 353 n n C1D N1N NAP sing 354 n n C1D H1D NAP sing 355 n n N1N C2N NAP sing 356 n y N1N C6N NAP doub 357 n y C2N C3N NAP doub 358 n y C2N H2N NAP sing 359 n n C3N C7N NAP sing 360 n n C3N C4N NAP sing 361 n y C7N O7N NAP doub 362 n n C7N N7N NAP sing 363 n n N7N H71N NAP sing 364 n n N7N H72N NAP sing 365 n n C4N C5N NAP doub 366 n y C4N H4N NAP sing 367 n n C5N C6N NAP sing 368 n y C5N H5N NAP sing 369 n n C6N H6N NAP sing 370 n n P2B O1X NAP doub 371 n n P2B O2X NAP sing 372 n n P2B O3X NAP sing 373 n n O2X HOP2 NAP sing 374 n n O3X HOP3 NAP sing 375 n n # _atom_sites.entry_id 5ECX _atom_sites.fract_transf_matrix[1][1] 0.013146 _atom_sites.fract_transf_matrix[1][2] 0.00759 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 207 NAP NAP . D 3 5N1 A 1 202 4 5N1 DRG . E 2 NAP B 1 201 208 NAP NAP . F 3 5N1 B 1 202 3 5N1 DRG . G 4 GOL B 1 203 221 GOL GOL . H 5 GLV B 1 204 222 GLV GOL . I 6 HOH A 1 301 27 HOH HOH . I 6 HOH A 2 302 65 HOH HOH . I 6 HOH A 3 303 62 HOH HOH . I 6 HOH A 4 304 30 HOH HOH . I 6 HOH A 5 305 54 HOH HOH . I 6 HOH A 6 306 2 HOH HOH . I 6 HOH A 7 307 25 HOH HOH . I 6 HOH A 8 308 24 HOH HOH . I 6 HOH A 9 309 28 HOH HOH . I 6 HOH A 10 310 7 HOH HOH . I 6 HOH A 11 311 39 HOH HOH . I 6 HOH A 12 312 57 HOH HOH . I 6 HOH A 13 313 58 HOH HOH . I 6 HOH A 14 314 10 HOH HOH . I 6 HOH A 15 315 26 HOH HOH . I 6 HOH A 16 316 63 HOH HOH . I 6 HOH A 17 317 3 HOH HOH . I 6 HOH A 18 318 19 HOH HOH . I 6 HOH A 19 319 35 HOH HOH . I 6 HOH A 20 320 32 HOH HOH . I 6 HOH A 21 321 12 HOH HOH . I 6 HOH A 22 322 5 HOH HOH . I 6 HOH A 23 323 51 HOH HOH . I 6 HOH A 24 324 20 HOH HOH . I 6 HOH A 25 325 56 HOH HOH . I 6 HOH A 26 326 23 HOH HOH . I 6 HOH A 27 327 80 HOH HOH . I 6 HOH A 28 328 34 HOH HOH . I 6 HOH A 29 329 9 HOH HOH . I 6 HOH A 30 330 53 HOH HOH . I 6 HOH A 31 331 31 HOH HOH . I 6 HOH A 32 332 21 HOH HOH . I 6 HOH A 33 333 15 HOH HOH . I 6 HOH A 34 334 52 HOH HOH . I 6 HOH A 35 335 55 HOH HOH . I 6 HOH A 36 336 38 HOH HOH . I 6 HOH A 37 337 61 HOH HOH . I 6 HOH A 38 338 66 HOH HOH . J 6 HOH B 1 301 71 HOH HOH . J 6 HOH B 2 302 60 HOH HOH . J 6 HOH B 3 303 69 HOH HOH . J 6 HOH B 4 304 78 HOH HOH . J 6 HOH B 5 305 79 HOH HOH . J 6 HOH B 6 306 74 HOH HOH . J 6 HOH B 7 307 16 HOH HOH . J 6 HOH B 8 308 4 HOH HOH . J 6 HOH B 9 309 37 HOH HOH . J 6 HOH B 10 310 42 HOH HOH . J 6 HOH B 11 311 67 HOH HOH . J 6 HOH B 12 312 17 HOH HOH . J 6 HOH B 13 313 48 HOH HOH . J 6 HOH B 14 314 73 HOH HOH . J 6 HOH B 15 315 49 HOH HOH . J 6 HOH B 16 316 33 HOH HOH . J 6 HOH B 17 317 75 HOH HOH . J 6 HOH B 18 318 36 HOH HOH . J 6 HOH B 19 319 46 HOH HOH . J 6 HOH B 20 320 70 HOH HOH . J 6 HOH B 21 321 72 HOH HOH . J 6 HOH B 22 322 8 HOH HOH . J 6 HOH B 23 323 40 HOH HOH . J 6 HOH B 24 324 64 HOH HOH . J 6 HOH B 25 325 11 HOH HOH . J 6 HOH B 26 326 13 HOH HOH . J 6 HOH B 27 327 14 HOH HOH . J 6 HOH B 28 328 68 HOH HOH . J 6 HOH B 29 329 18 HOH HOH . J 6 HOH B 30 330 43 HOH HOH . J 6 HOH B 31 331 6 HOH HOH . J 6 HOH B 32 332 45 HOH HOH . J 6 HOH B 33 333 44 HOH HOH . J 6 HOH B 34 334 76 HOH HOH . J 6 HOH B 35 335 77 HOH HOH . J 6 HOH B 36 336 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 14.505 -8.224 1.993 1 48.52 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . C 2 15.717 -7.823 2.722 1 37.65 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . C 2 14.536 -9.615 1.476 1 46.37 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . C 2 13.203 -8.007 2.911 1 50.99 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . C 2 12.931 -6.749 3.491 1 46.19 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . C 2 11.779 -6.913 4.474 1 48.79 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . C 2 12.219 -7.554 5.655 1 49.36 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . C 2 11.16 -5.601 4.947 1 49.28 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . C 2 10.231 -5.126 3.999 1 55.05 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . C 2 10.496 -6.062 6.229 1 45.68 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . C 2 9.39 -6.864 5.876 1 51.06 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . C 2 11.532 -7.016 6.766 1 44.65 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . C 2 12.522 -6.326 7.593 1 44.87 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . C 2 13.695 -5.717 7.202 1 49.6 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . C 2 14.312 -5.232 8.31 1 49.31 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . C 2 13.547 -5.535 9.386 1 45.42 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . C 2 13.691 -5.291 10.734 1 49.58 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . C 2 14.755 -4.638 11.201 1 46.16 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . C 2 12.715 -5.741 11.597 1 50.75 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . C 2 11.604 -6.416 11.129 1 49.32 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . C 2 11.463 -6.668 9.786 1 48.6 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . C 2 12.425 -6.222 8.943 1 47.69 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . C 2 14.203 -7.169 0.814 1 50.85 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . C 2 15.133 -6.454 -0.295 1 49.99 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . C 2 14.189 -5.848 -1.27 1 51.01 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . C 2 16.177 -5.676 0.409 1 44.69 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . C 2 15.842 -7.731 -0.981 1 49.19 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . C 2 15.212 -8.51 -1.97 1 48.27 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . C 2 16.169 -8.682 -3.149 1 50.77 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . C 2 17.367 -9.313 -2.724 1 49.61 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . C 2 15.582 -9.558 -4.246 1 56.4 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . C 2 15.899 -8.991 -5.499 1 51.4 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . C 2 16.317 -10.876 -4.087 1 54.71 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . C 2 16.402 -11.583 -5.305 1 52.43 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . C 2 17.668 -10.374 -3.608 1 44.92 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . C 2 18.501 -11.436 -2.992 1 48.39 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . C 2 19.653 -11.782 -3.639 1 49.49 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . C 2 20.482 -12.775 -3.133 1 46.44 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . C 2 21.788 -13.015 -3.819 1 39.66 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . C 2 22.729 -13.878 -3.231 1 46.93 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . C 2 22.008 -12.397 -4.985 1 41.71 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . C 2 20.143 -13.432 -1.951 1 42.71 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . C 2 18.966 -13.08 -1.299 1 42.21 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . C 2 18.147 -12.082 -1.834 1 51.54 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . C 2 7.875 -6.322 5.961 1 55.51 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . C 2 7.811 -5.444 7.2 1 54.91 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . C 2 7.615 -5.607 4.656 1 53.81 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . C 2 6.87 -7.444 6.08 1 57.96 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #