data_5ECX # _model_server_result.job_id R0YEaxiEPI7ljVpALMc5iA _model_server_result.datetime_utc '2024-11-18 03:27:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ecx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5ECX # _exptl.entry_id 5ECX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ECX _cell.length_a 76.07 _cell.length_b 76.07 _cell.length_c 113.929 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ECX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 296 n n PA O2A NAP sing 297 n n PA O5B NAP sing 298 n n PA O3 NAP sing 299 n n O2A HOA2 NAP sing 300 n n O5B C5B NAP sing 301 n n C5B C4B NAP sing 302 n n C5B H51A NAP sing 303 n n C5B H52A NAP sing 304 n n C4B O4B NAP sing 305 n n C4B C3B NAP sing 306 n n C4B H4B NAP sing 307 n n O4B C1B NAP sing 308 n n C3B O3B NAP sing 309 n n C3B C2B NAP sing 310 n n C3B H3B NAP sing 311 n n O3B HO3A NAP sing 312 n n C2B O2B NAP sing 313 n n C2B C1B NAP sing 314 n n C2B H2B NAP sing 315 n n O2B P2B NAP sing 316 n n C1B N9A NAP sing 317 n n C1B H1B NAP sing 318 n n N9A C8A NAP sing 319 n y N9A C4A NAP sing 320 n y C8A N7A NAP doub 321 n y C8A H8A NAP sing 322 n n N7A C5A NAP sing 323 n y C5A C6A NAP sing 324 n y C5A C4A NAP doub 325 n y C6A N6A NAP sing 326 n n C6A N1A NAP doub 327 n y N6A H61A NAP sing 328 n n N6A H62A NAP sing 329 n n N1A C2A NAP sing 330 n y C2A N3A NAP doub 331 n y C2A H2A NAP sing 332 n n N3A C4A NAP sing 333 n y O3 PN NAP sing 334 n n PN O1N NAP doub 335 n n PN O2N NAP sing 336 n n PN O5D NAP sing 337 n n O5D C5D NAP sing 338 n n C5D C4D NAP sing 339 n n C5D H51N NAP sing 340 n n C5D H52N NAP sing 341 n n C4D O4D NAP sing 342 n n C4D C3D NAP sing 343 n n C4D H4D NAP sing 344 n n O4D C1D NAP sing 345 n n C3D O3D NAP sing 346 n n C3D C2D NAP sing 347 n n C3D H3D NAP sing 348 n n O3D HO3N NAP sing 349 n n C2D O2D NAP sing 350 n n C2D C1D NAP sing 351 n n C2D H2D NAP sing 352 n n O2D HO2N NAP sing 353 n n C1D N1N NAP sing 354 n n C1D H1D NAP sing 355 n n N1N C2N NAP sing 356 n y N1N C6N NAP doub 357 n y C2N C3N NAP doub 358 n y C2N H2N NAP sing 359 n n C3N C7N NAP sing 360 n n C3N C4N NAP sing 361 n y C7N O7N NAP doub 362 n n C7N N7N NAP sing 363 n n N7N H71N NAP sing 364 n n N7N H72N NAP sing 365 n n C4N C5N NAP doub 366 n y C4N H4N NAP sing 367 n n C5N C6N NAP sing 368 n y C5N H5N NAP sing 369 n n C6N H6N NAP sing 370 n n P2B O1X NAP doub 371 n n P2B O2X NAP sing 372 n n P2B O3X NAP sing 373 n n O2X HOP2 NAP sing 374 n n O3X HOP3 NAP sing 375 n n # _atom_sites.entry_id 5ECX _atom_sites.fract_transf_matrix[1][1] 0.013146 _atom_sites.fract_transf_matrix[1][2] 0.00759 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 207 NAP NAP . D 3 5N1 A 1 202 4 5N1 DRG . E 2 NAP B 1 201 208 NAP NAP . F 3 5N1 B 1 202 3 5N1 DRG . G 4 GOL B 1 203 221 GOL GOL . H 5 GLV B 1 204 222 GLV GOL . I 6 HOH A 1 301 27 HOH HOH . I 6 HOH A 2 302 65 HOH HOH . I 6 HOH A 3 303 62 HOH HOH . I 6 HOH A 4 304 30 HOH HOH . I 6 HOH A 5 305 54 HOH HOH . I 6 HOH A 6 306 2 HOH HOH . I 6 HOH A 7 307 25 HOH HOH . I 6 HOH A 8 308 24 HOH HOH . I 6 HOH A 9 309 28 HOH HOH . I 6 HOH A 10 310 7 HOH HOH . I 6 HOH A 11 311 39 HOH HOH . I 6 HOH A 12 312 57 HOH HOH . I 6 HOH A 13 313 58 HOH HOH . I 6 HOH A 14 314 10 HOH HOH . I 6 HOH A 15 315 26 HOH HOH . I 6 HOH A 16 316 63 HOH HOH . I 6 HOH A 17 317 3 HOH HOH . I 6 HOH A 18 318 19 HOH HOH . I 6 HOH A 19 319 35 HOH HOH . I 6 HOH A 20 320 32 HOH HOH . I 6 HOH A 21 321 12 HOH HOH . I 6 HOH A 22 322 5 HOH HOH . I 6 HOH A 23 323 51 HOH HOH . I 6 HOH A 24 324 20 HOH HOH . I 6 HOH A 25 325 56 HOH HOH . I 6 HOH A 26 326 23 HOH HOH . I 6 HOH A 27 327 80 HOH HOH . I 6 HOH A 28 328 34 HOH HOH . I 6 HOH A 29 329 9 HOH HOH . I 6 HOH A 30 330 53 HOH HOH . I 6 HOH A 31 331 31 HOH HOH . I 6 HOH A 32 332 21 HOH HOH . I 6 HOH A 33 333 15 HOH HOH . I 6 HOH A 34 334 52 HOH HOH . I 6 HOH A 35 335 55 HOH HOH . I 6 HOH A 36 336 38 HOH HOH . I 6 HOH A 37 337 61 HOH HOH . I 6 HOH A 38 338 66 HOH HOH . J 6 HOH B 1 301 71 HOH HOH . J 6 HOH B 2 302 60 HOH HOH . J 6 HOH B 3 303 69 HOH HOH . J 6 HOH B 4 304 78 HOH HOH . J 6 HOH B 5 305 79 HOH HOH . J 6 HOH B 6 306 74 HOH HOH . J 6 HOH B 7 307 16 HOH HOH . J 6 HOH B 8 308 4 HOH HOH . J 6 HOH B 9 309 37 HOH HOH . J 6 HOH B 10 310 42 HOH HOH . J 6 HOH B 11 311 67 HOH HOH . J 6 HOH B 12 312 17 HOH HOH . J 6 HOH B 13 313 48 HOH HOH . J 6 HOH B 14 314 73 HOH HOH . J 6 HOH B 15 315 49 HOH HOH . J 6 HOH B 16 316 33 HOH HOH . J 6 HOH B 17 317 75 HOH HOH . J 6 HOH B 18 318 36 HOH HOH . J 6 HOH B 19 319 46 HOH HOH . J 6 HOH B 20 320 70 HOH HOH . J 6 HOH B 21 321 72 HOH HOH . J 6 HOH B 22 322 8 HOH HOH . J 6 HOH B 23 323 40 HOH HOH . J 6 HOH B 24 324 64 HOH HOH . J 6 HOH B 25 325 11 HOH HOH . J 6 HOH B 26 326 13 HOH HOH . J 6 HOH B 27 327 14 HOH HOH . J 6 HOH B 28 328 68 HOH HOH . J 6 HOH B 29 329 18 HOH HOH . J 6 HOH B 30 330 43 HOH HOH . J 6 HOH B 31 331 6 HOH HOH . J 6 HOH B 32 332 45 HOH HOH . J 6 HOH B 33 333 44 HOH HOH . J 6 HOH B 34 334 76 HOH HOH . J 6 HOH B 35 335 77 HOH HOH . J 6 HOH B 36 336 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 42.314 -45.936 -5.415 1 48.79 ? PA NAP 201 B 1 HETATM 2 O O1A NAP . . . E 2 43.323 -44.996 -4.872 1 39.95 ? O1A NAP 201 B 1 HETATM 3 O O2A NAP . . . E 2 40.996 -45.309 -5.669 1 46.64 ? O2A NAP 201 B 1 HETATM 4 O O5B NAP . . . E 2 42.868 -46.621 -6.753 1 49.07 ? O5B NAP 201 B 1 HETATM 5 C C5B NAP . . . E 2 43.979 -47.501 -6.681 1 41.45 ? C5B NAP 201 B 1 HETATM 6 C C4B NAP . . . E 2 44.366 -47.8 -8.122 1 41.17 ? C4B NAP 201 B 1 HETATM 7 O O4B NAP . . . E 2 44.876 -46.64 -8.737 1 43.05 ? O4B NAP 201 B 1 HETATM 8 C C3B NAP . . . E 2 45.456 -48.847 -8.265 1 49.14 ? C3B NAP 201 B 1 HETATM 9 O O3B NAP . . . E 2 44.881 -50.131 -8.221 1 46.71 ? O3B NAP 201 B 1 HETATM 10 C C2B NAP . . . E 2 46.004 -48.502 -9.626 1 42.61 ? C2B NAP 201 B 1 HETATM 11 O O2B NAP . . . E 2 45.073 -48.913 -10.586 1 48.58 ? O2B NAP 201 B 1 HETATM 12 C C1B NAP . . . E 2 45.901 -46.993 -9.63 1 47.26 ? C1B NAP 201 B 1 HETATM 13 N N9A NAP . . . E 2 47.143 -46.355 -9.19 1 45.82 ? N9A NAP 201 B 1 HETATM 14 C C8A NAP . . . E 2 47.505 -45.99 -7.922 1 41.61 ? C8A NAP 201 B 1 HETATM 15 N N7A NAP . . . E 2 48.718 -45.407 -7.998 1 43.98 ? N7A NAP 201 B 1 HETATM 16 C C5A NAP . . . E 2 49.127 -45.391 -9.285 1 48.55 ? C5A NAP 201 B 1 HETATM 17 C C6A NAP . . . E 2 50.275 -44.921 -9.918 1 47.6 ? C6A NAP 201 B 1 HETATM 18 N N6A NAP . . . E 2 51.264 -44.337 -9.229 1 44.63 ? N6A NAP 201 B 1 HETATM 19 N N1A NAP . . . E 2 50.377 -45.062 -11.284 1 46.72 ? N1A NAP 201 B 1 HETATM 20 C C2A NAP . . . E 2 49.37 -45.655 -12.014 1 53.52 ? C2A NAP 201 B 1 HETATM 21 N N3A NAP . . . E 2 48.241 -46.117 -11.379 1 47.54 ? N3A NAP 201 B 1 HETATM 22 C C4A NAP . . . E 2 48.133 -45.984 -10.042 1 42.15 ? C4A NAP 201 B 1 HETATM 23 O O3 NAP . . . E 2 42.142 -47.23 -4.466 1 43.44 ? O3 NAP 201 B 1 HETATM 24 P PN NAP . . . E 2 42.042 -47.448 -2.887 1 43.36 ? PN NAP 201 B 1 HETATM 25 O O1N NAP . . . E 2 41.714 -48.859 -2.647 1 50.19 ? O1N NAP 201 B 1 HETATM 26 O O2N NAP . . . E 2 43.213 -46.829 -2.235 1 42.98 ? O2N NAP 201 B 1 HETATM 27 O O5D NAP . . . E 2 40.765 -46.568 -2.448 1 45.88 ? O5D NAP 201 B 1 HETATM 28 C C5D NAP . . . E 2 39.455 -46.959 -2.809 1 48.82 ? C5D NAP 201 B 1 HETATM 29 C C4D NAP . . . E 2 38.534 -46.825 -1.602 1 49.28 ? C4D NAP 201 B 1 HETATM 30 O O4D NAP . . . E 2 38.571 -45.479 -1.147 1 43.4 ? O4D NAP 201 B 1 HETATM 31 C C3D NAP . . . E 2 37.09 -47.118 -1.998 1 41.11 ? C3D NAP 201 B 1 HETATM 32 O O3D NAP . . . E 2 36.453 -47.797 -0.951 1 50.02 ? O3D NAP 201 B 1 HETATM 33 C C2D NAP . . . E 2 36.478 -45.745 -2.119 1 46.43 ? C2D NAP 201 B 1 HETATM 34 O O2D NAP . . . E 2 35.091 -45.753 -1.878 1 54.13 ? O2D NAP 201 B 1 HETATM 35 C C1D NAP . . . E 2 37.241 -44.997 -1.035 1 45.21 ? C1D NAP 201 B 1 HETATM 36 N N1N NAP . . . E 2 37.084 -43.54 -1.201 1 39.83 ? N1N NAP 201 B 1 HETATM 37 C C2N NAP . . . E 2 36.597 -42.844 -0.142 1 47.63 ? C2N NAP 201 B 1 HETATM 38 C C3N NAP . . . E 2 36.4 -41.49 -0.222 1 43.33 ? C3N NAP 201 B 1 HETATM 39 C C7N NAP . . . E 2 35.909 -40.729 0.976 1 38.79 ? C7N NAP 201 B 1 HETATM 40 O O7N NAP . . . E 2 35.962 -39.354 0.863 1 39.92 ? O7N NAP 201 B 1 HETATM 41 N N7N NAP . . . E 2 35.432 -41.337 2.075 1 39.93 ? N7N NAP 201 B 1 HETATM 42 C C4N NAP . . . E 2 36.699 -40.812 -1.404 1 47.25 ? C4N NAP 201 B 1 HETATM 43 C C5N NAP . . . E 2 37.196 -41.532 -2.485 1 45.39 ? C5N NAP 201 B 1 HETATM 44 C C6N NAP . . . E 2 37.383 -42.902 -2.374 1 43.43 ? C6N NAP 201 B 1 HETATM 45 P P2B NAP . . . E 2 45.101 -50.329 -11.356 1 50.86 ? P2B NAP 201 B 1 HETATM 46 O O1X NAP . . . E 2 46.433 -50.469 -12.034 1 45.26 ? O1X NAP 201 B 1 HETATM 47 O O2X NAP . . . E 2 44.787 -51.39 -10.348 1 45.11 ? O2X NAP 201 B 1 HETATM 48 O O3X NAP . . . E 2 44.001 -50.318 -12.38 1 53.47 ? O3X NAP 201 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #