data_5ECX # _model_server_result.job_id vxY7pYzLsdfxVvCL2_0GZA _model_server_result.datetime_utc '2024-11-18 03:41:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ecx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 5ECX # _exptl.entry_id 5ECX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.434 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-[(3~{S})-3-(6-pyridin-4-yl-1,3-benzodioxol-4-yl)but-1-ynyl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ECX _cell.length_a 76.07 _cell.length_b 76.07 _cell.length_c 113.929 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ECX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C22 H21 N5 O2' _chem_comp.formula_weight 387.434 _chem_comp.id 5N1 _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-[(3~{S})-3-(6-pyridin-4-yl-1,3-benzodioxol-4-yl)but-1-ynyl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAU NAT 5N1 doub 1 n y CAU CAV 5N1 sing 2 n y NAT CAS 5N1 sing 3 n y CAV CAQ 5N1 doub 4 n y CAS CAR 5N1 doub 5 n y CAQ CAR 5N1 sing 6 n y CAQ CAM 5N1 sing 7 n n CAJ CAI 5N1 sing 8 n n CAM CAN 5N1 doub 9 n y CAM CAL 5N1 sing 10 n y CAN CAO 5N1 sing 11 n y CAL CAK 5N1 doub 12 n y CAO CAP 5N1 doub 13 n y CAO OAY 5N1 sing 14 n n CAK CAP 5N1 sing 15 n y CAK CAI 5N1 sing 16 n n CAP OAW 5N1 sing 17 n n CAI CAH 5N1 sing 18 n n OAY CAX 5N1 sing 19 n n OAW CAX 5N1 sing 20 n n CAH CAG 5N1 trip 21 n n CAG C5 5N1 sing 22 n n NAZ C6 5N1 sing 23 n n C5 C6 5N1 doub 24 n y C5 C4 5N1 sing 25 n y CBC CBB 5N1 sing 26 n n C6 N1 5N1 sing 27 n y CBB C4 5N1 sing 28 n n C4 N3 5N1 doub 29 n y N1 C2 5N1 doub 30 n y N3 C2 5N1 sing 31 n y C2 NBA 5N1 sing 32 n n CBC H1 5N1 sing 33 n n CBC H2 5N1 sing 34 n n CBC H3 5N1 sing 35 n n CBB H4 5N1 sing 36 n n CBB H5 5N1 sing 37 n n NBA H6 5N1 sing 38 n n NBA H7 5N1 sing 39 n n NAZ H8 5N1 sing 40 n n NAZ H9 5N1 sing 41 n n CAI H10 5N1 sing 42 n n CAJ H11 5N1 sing 43 n n CAJ H12 5N1 sing 44 n n CAJ H13 5N1 sing 45 n n CAL H14 5N1 sing 46 n n CAX H15 5N1 sing 47 n n CAX H16 5N1 sing 48 n n CAN H17 5N1 sing 49 n n CAR H18 5N1 sing 50 n n CAS H19 5N1 sing 51 n n CAU H20 5N1 sing 52 n n CAV H21 5N1 sing 53 n n # _atom_sites.entry_id 5ECX _atom_sites.fract_transf_matrix[1][1] 0.013146 _atom_sites.fract_transf_matrix[1][2] 0.00759 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 207 NAP NAP . D 3 5N1 A 1 202 4 5N1 DRG . E 2 NAP B 1 201 208 NAP NAP . F 3 5N1 B 1 202 3 5N1 DRG . G 4 GOL B 1 203 221 GOL GOL . H 5 GLV B 1 204 222 GLV GOL . I 6 HOH A 1 301 27 HOH HOH . I 6 HOH A 2 302 65 HOH HOH . I 6 HOH A 3 303 62 HOH HOH . I 6 HOH A 4 304 30 HOH HOH . I 6 HOH A 5 305 54 HOH HOH . I 6 HOH A 6 306 2 HOH HOH . I 6 HOH A 7 307 25 HOH HOH . I 6 HOH A 8 308 24 HOH HOH . I 6 HOH A 9 309 28 HOH HOH . I 6 HOH A 10 310 7 HOH HOH . I 6 HOH A 11 311 39 HOH HOH . I 6 HOH A 12 312 57 HOH HOH . I 6 HOH A 13 313 58 HOH HOH . I 6 HOH A 14 314 10 HOH HOH . I 6 HOH A 15 315 26 HOH HOH . I 6 HOH A 16 316 63 HOH HOH . I 6 HOH A 17 317 3 HOH HOH . I 6 HOH A 18 318 19 HOH HOH . I 6 HOH A 19 319 35 HOH HOH . I 6 HOH A 20 320 32 HOH HOH . I 6 HOH A 21 321 12 HOH HOH . I 6 HOH A 22 322 5 HOH HOH . I 6 HOH A 23 323 51 HOH HOH . I 6 HOH A 24 324 20 HOH HOH . I 6 HOH A 25 325 56 HOH HOH . I 6 HOH A 26 326 23 HOH HOH . I 6 HOH A 27 327 80 HOH HOH . I 6 HOH A 28 328 34 HOH HOH . I 6 HOH A 29 329 9 HOH HOH . I 6 HOH A 30 330 53 HOH HOH . I 6 HOH A 31 331 31 HOH HOH . I 6 HOH A 32 332 21 HOH HOH . I 6 HOH A 33 333 15 HOH HOH . I 6 HOH A 34 334 52 HOH HOH . I 6 HOH A 35 335 55 HOH HOH . I 6 HOH A 36 336 38 HOH HOH . I 6 HOH A 37 337 61 HOH HOH . I 6 HOH A 38 338 66 HOH HOH . J 6 HOH B 1 301 71 HOH HOH . J 6 HOH B 2 302 60 HOH HOH . J 6 HOH B 3 303 69 HOH HOH . J 6 HOH B 4 304 78 HOH HOH . J 6 HOH B 5 305 79 HOH HOH . J 6 HOH B 6 306 74 HOH HOH . J 6 HOH B 7 307 16 HOH HOH . J 6 HOH B 8 308 4 HOH HOH . J 6 HOH B 9 309 37 HOH HOH . J 6 HOH B 10 310 42 HOH HOH . J 6 HOH B 11 311 67 HOH HOH . J 6 HOH B 12 312 17 HOH HOH . J 6 HOH B 13 313 48 HOH HOH . J 6 HOH B 14 314 73 HOH HOH . J 6 HOH B 15 315 49 HOH HOH . J 6 HOH B 16 316 33 HOH HOH . J 6 HOH B 17 317 75 HOH HOH . J 6 HOH B 18 318 36 HOH HOH . J 6 HOH B 19 319 46 HOH HOH . J 6 HOH B 20 320 70 HOH HOH . J 6 HOH B 21 321 72 HOH HOH . J 6 HOH B 22 322 8 HOH HOH . J 6 HOH B 23 323 40 HOH HOH . J 6 HOH B 24 324 64 HOH HOH . J 6 HOH B 25 325 11 HOH HOH . J 6 HOH B 26 326 13 HOH HOH . J 6 HOH B 27 327 14 HOH HOH . J 6 HOH B 28 328 68 HOH HOH . J 6 HOH B 29 329 18 HOH HOH . J 6 HOH B 30 330 43 HOH HOH . J 6 HOH B 31 331 6 HOH HOH . J 6 HOH B 32 332 45 HOH HOH . J 6 HOH B 33 333 44 HOH HOH . J 6 HOH B 34 334 76 HOH HOH . J 6 HOH B 35 335 77 HOH HOH . J 6 HOH B 36 336 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5N1 . . . F 3 32.602 -37.61 -0.801 1 42.55 ? C4 5N1 202 B 1 HETATM 2 C C5 5N1 . . . F 3 33.741 -37.75 -1.585 1 47.81 ? C5 5N1 202 B 1 HETATM 3 C C6 5N1 . . . F 3 34.779 -36.847 -1.398 1 40.15 ? C6 5N1 202 B 1 HETATM 4 N N1 5N1 . . . F 3 34.679 -35.872 -0.486 1 38.98 ? N1 5N1 202 B 1 HETATM 5 N N3 5N1 . . . F 3 32.544 -36.618 0.101 1 43.96 ? N3 5N1 202 B 1 HETATM 6 C CBC 5N1 . . . F 3 30.333 -37.731 -1.533 1 51.46 ? CBC 5N1 202 B 1 HETATM 7 C CBB 5N1 . . . F 3 31.526 -38.482 -0.94 1 49.17 ? CBB 5N1 202 B 1 HETATM 8 C C2 5N1 . . . F 3 33.567 -35.761 0.257 1 46.98 ? C2 5N1 202 B 1 HETATM 9 N NBA 5N1 . . . F 3 33.477 -34.79 1.161 1 41.17 ? NBA 5N1 202 B 1 HETATM 10 N NAZ 5N1 . . . F 3 35.858 -37.001 -2.161 1 45.36 ? NAZ 5N1 202 B 1 HETATM 11 C CAG 5N1 . . . F 3 33.848 -38.802 -2.569 1 48.34 ? CAG 5N1 202 B 1 HETATM 12 C CAH 5N1 . . . F 3 33.939 -39.694 -3.404 1 57.74 ? CAH 5N1 202 B 1 HETATM 13 C CAI 5N1 . . . F 3 34.049 -40.764 -4.404 1 55.09 ? CAI 5N1 202 B 1 HETATM 14 C CAJ 5N1 . . . F 3 34.603 -40.188 -5.709 1 54.73 ? CAJ 5N1 202 B 1 HETATM 15 C CAK 5N1 . . . F 3 32.793 -41.313 -4.636 1 63.13 ? CAK 5N1 202 B 1 HETATM 16 C CAL 5N1 . . . F 3 31.759 -40.494 -5.066 1 62.36 ? CAL 5N1 202 B 1 HETATM 17 C CAP 5N1 . . . F 3 32.604 -42.619 -4.442 1 63.78 ? CAP 5N1 202 B 1 HETATM 18 O OAW 5N1 . . . F 3 33.504 -43.548 -4.027 1 60.68 ? OAW 5N1 202 B 1 HETATM 19 C CAX 5N1 . . . F 3 32.693 -44.696 -3.692 1 60.58 ? CAX 5N1 202 B 1 HETATM 20 O OAY 5N1 . . . F 3 31.445 -44.509 -4.397 1 72.07 ? OAY 5N1 202 B 1 HETATM 21 C CAO 5N1 . . . F 3 31.412 -43.176 -4.655 1 70.82 ? CAO 5N1 202 B 1 HETATM 22 C CAN 5N1 . . . F 3 30.383 -42.437 -5.069 1 63.15 ? CAN 5N1 202 B 1 HETATM 23 C CAM 5N1 . . . F 3 30.523 -41.075 -5.287 1 71.04 ? CAM 5N1 202 B 1 HETATM 24 C CAQ 5N1 . . . F 3 29.446 -40.31 -5.718 1 73.16 ? CAQ 5N1 202 B 1 HETATM 25 C CAR 5N1 . . . F 3 29.476 -38.927 -5.576 1 66.99 ? CAR 5N1 202 B 1 HETATM 26 C CAS 5N1 . . . F 3 28.401 -38.158 -6.006 1 70.23 ? CAS 5N1 202 B 1 HETATM 27 N NAT 5N1 . . . F 3 27.286 -38.777 -6.582 1 67.9 ? NAT 5N1 202 B 1 HETATM 28 C CAU 5N1 . . . F 3 27.26 -40.17 -6.722 1 75.28 ? CAU 5N1 202 B 1 HETATM 29 C CAV 5N1 . . . F 3 28.34 -40.93 -6.29 1 80.21 ? CAV 5N1 202 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #