data_5ECX # _model_server_result.job_id Wjfme880iq0petxgnHp-bg _model_server_result.datetime_utc '2024-11-18 03:42:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ecx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 5ECX # _exptl.entry_id 5ECX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ECX _cell.length_a 76.07 _cell.length_b 76.07 _cell.length_c 113.929 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ECX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 175 n n C1 C2 GOL sing 176 n n C1 H11 GOL sing 177 n n C1 H12 GOL sing 178 n n O1 HO1 GOL sing 179 n n C2 O2 GOL sing 180 n n C2 C3 GOL sing 181 n n C2 H2 GOL sing 182 n n O2 HO2 GOL sing 183 n n C3 O3 GOL sing 184 n n C3 H31 GOL sing 185 n n C3 H32 GOL sing 186 n n O3 HO3 GOL sing 187 n n # _atom_sites.entry_id 5ECX _atom_sites.fract_transf_matrix[1][1] 0.013146 _atom_sites.fract_transf_matrix[1][2] 0.00759 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 207 NAP NAP . D 3 5N1 A 1 202 4 5N1 DRG . E 2 NAP B 1 201 208 NAP NAP . F 3 5N1 B 1 202 3 5N1 DRG . G 4 GOL B 1 203 221 GOL GOL . H 5 GLV B 1 204 222 GLV GOL . I 6 HOH A 1 301 27 HOH HOH . I 6 HOH A 2 302 65 HOH HOH . I 6 HOH A 3 303 62 HOH HOH . I 6 HOH A 4 304 30 HOH HOH . I 6 HOH A 5 305 54 HOH HOH . I 6 HOH A 6 306 2 HOH HOH . I 6 HOH A 7 307 25 HOH HOH . I 6 HOH A 8 308 24 HOH HOH . I 6 HOH A 9 309 28 HOH HOH . I 6 HOH A 10 310 7 HOH HOH . I 6 HOH A 11 311 39 HOH HOH . I 6 HOH A 12 312 57 HOH HOH . I 6 HOH A 13 313 58 HOH HOH . I 6 HOH A 14 314 10 HOH HOH . I 6 HOH A 15 315 26 HOH HOH . I 6 HOH A 16 316 63 HOH HOH . I 6 HOH A 17 317 3 HOH HOH . I 6 HOH A 18 318 19 HOH HOH . I 6 HOH A 19 319 35 HOH HOH . I 6 HOH A 20 320 32 HOH HOH . I 6 HOH A 21 321 12 HOH HOH . I 6 HOH A 22 322 5 HOH HOH . I 6 HOH A 23 323 51 HOH HOH . I 6 HOH A 24 324 20 HOH HOH . I 6 HOH A 25 325 56 HOH HOH . I 6 HOH A 26 326 23 HOH HOH . I 6 HOH A 27 327 80 HOH HOH . I 6 HOH A 28 328 34 HOH HOH . I 6 HOH A 29 329 9 HOH HOH . I 6 HOH A 30 330 53 HOH HOH . I 6 HOH A 31 331 31 HOH HOH . I 6 HOH A 32 332 21 HOH HOH . I 6 HOH A 33 333 15 HOH HOH . I 6 HOH A 34 334 52 HOH HOH . I 6 HOH A 35 335 55 HOH HOH . I 6 HOH A 36 336 38 HOH HOH . I 6 HOH A 37 337 61 HOH HOH . I 6 HOH A 38 338 66 HOH HOH . J 6 HOH B 1 301 71 HOH HOH . J 6 HOH B 2 302 60 HOH HOH . J 6 HOH B 3 303 69 HOH HOH . J 6 HOH B 4 304 78 HOH HOH . J 6 HOH B 5 305 79 HOH HOH . J 6 HOH B 6 306 74 HOH HOH . J 6 HOH B 7 307 16 HOH HOH . J 6 HOH B 8 308 4 HOH HOH . J 6 HOH B 9 309 37 HOH HOH . J 6 HOH B 10 310 42 HOH HOH . J 6 HOH B 11 311 67 HOH HOH . J 6 HOH B 12 312 17 HOH HOH . J 6 HOH B 13 313 48 HOH HOH . J 6 HOH B 14 314 73 HOH HOH . J 6 HOH B 15 315 49 HOH HOH . J 6 HOH B 16 316 33 HOH HOH . J 6 HOH B 17 317 75 HOH HOH . J 6 HOH B 18 318 36 HOH HOH . J 6 HOH B 19 319 46 HOH HOH . J 6 HOH B 20 320 70 HOH HOH . J 6 HOH B 21 321 72 HOH HOH . J 6 HOH B 22 322 8 HOH HOH . J 6 HOH B 23 323 40 HOH HOH . J 6 HOH B 24 324 64 HOH HOH . J 6 HOH B 25 325 11 HOH HOH . J 6 HOH B 26 326 13 HOH HOH . J 6 HOH B 27 327 14 HOH HOH . J 6 HOH B 28 328 68 HOH HOH . J 6 HOH B 29 329 18 HOH HOH . J 6 HOH B 30 330 43 HOH HOH . J 6 HOH B 31 331 6 HOH HOH . J 6 HOH B 32 332 45 HOH HOH . J 6 HOH B 33 333 44 HOH HOH . J 6 HOH B 34 334 76 HOH HOH . J 6 HOH B 35 335 77 HOH HOH . J 6 HOH B 36 336 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 28.914 -41.779 0.103 1 65.38 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . G 4 28.229 -42.204 1.266 1 58.39 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . G 4 28.18 -42.256 -1.146 1 69.47 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . G 4 28.846 -43.386 -1.674 1 68.79 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . G 4 28.212 -41.129 -2.168 1 77.6 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . G 4 27.922 -39.915 -1.506 1 67.59 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #