data_5ECX # _model_server_result.job_id VanmPhFZzougldnPynVH6Q _model_server_result.datetime_utc '2024-11-18 03:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ecx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":204}' # _entry.id 5ECX # _exptl.entry_id 5ECX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 74.035 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ECX _cell.length_a 76.07 _cell.length_b 76.07 _cell.length_c 113.929 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ECX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H2 O3' _chem_comp.formula_weight 74.035 _chem_comp.id GLV _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYOXALATE;GLYOXYLATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GLV doub 160 n n C1 C2 GLV sing 161 n n C1 H1 GLV sing 162 n n C2 O2 GLV doub 163 n n C2 O3 GLV sing 164 n n O3 HO3 GLV sing 165 n n # _atom_sites.entry_id 5ECX _atom_sites.fract_transf_matrix[1][1] 0.013146 _atom_sites.fract_transf_matrix[1][2] 0.00759 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 207 NAP NAP . D 3 5N1 A 1 202 4 5N1 DRG . E 2 NAP B 1 201 208 NAP NAP . F 3 5N1 B 1 202 3 5N1 DRG . G 4 GOL B 1 203 221 GOL GOL . H 5 GLV B 1 204 222 GLV GOL . I 6 HOH A 1 301 27 HOH HOH . I 6 HOH A 2 302 65 HOH HOH . I 6 HOH A 3 303 62 HOH HOH . I 6 HOH A 4 304 30 HOH HOH . I 6 HOH A 5 305 54 HOH HOH . I 6 HOH A 6 306 2 HOH HOH . I 6 HOH A 7 307 25 HOH HOH . I 6 HOH A 8 308 24 HOH HOH . I 6 HOH A 9 309 28 HOH HOH . I 6 HOH A 10 310 7 HOH HOH . I 6 HOH A 11 311 39 HOH HOH . I 6 HOH A 12 312 57 HOH HOH . I 6 HOH A 13 313 58 HOH HOH . I 6 HOH A 14 314 10 HOH HOH . I 6 HOH A 15 315 26 HOH HOH . I 6 HOH A 16 316 63 HOH HOH . I 6 HOH A 17 317 3 HOH HOH . I 6 HOH A 18 318 19 HOH HOH . I 6 HOH A 19 319 35 HOH HOH . I 6 HOH A 20 320 32 HOH HOH . I 6 HOH A 21 321 12 HOH HOH . I 6 HOH A 22 322 5 HOH HOH . I 6 HOH A 23 323 51 HOH HOH . I 6 HOH A 24 324 20 HOH HOH . I 6 HOH A 25 325 56 HOH HOH . I 6 HOH A 26 326 23 HOH HOH . I 6 HOH A 27 327 80 HOH HOH . I 6 HOH A 28 328 34 HOH HOH . I 6 HOH A 29 329 9 HOH HOH . I 6 HOH A 30 330 53 HOH HOH . I 6 HOH A 31 331 31 HOH HOH . I 6 HOH A 32 332 21 HOH HOH . I 6 HOH A 33 333 15 HOH HOH . I 6 HOH A 34 334 52 HOH HOH . I 6 HOH A 35 335 55 HOH HOH . I 6 HOH A 36 336 38 HOH HOH . I 6 HOH A 37 337 61 HOH HOH . I 6 HOH A 38 338 66 HOH HOH . J 6 HOH B 1 301 71 HOH HOH . J 6 HOH B 2 302 60 HOH HOH . J 6 HOH B 3 303 69 HOH HOH . J 6 HOH B 4 304 78 HOH HOH . J 6 HOH B 5 305 79 HOH HOH . J 6 HOH B 6 306 74 HOH HOH . J 6 HOH B 7 307 16 HOH HOH . J 6 HOH B 8 308 4 HOH HOH . J 6 HOH B 9 309 37 HOH HOH . J 6 HOH B 10 310 42 HOH HOH . J 6 HOH B 11 311 67 HOH HOH . J 6 HOH B 12 312 17 HOH HOH . J 6 HOH B 13 313 48 HOH HOH . J 6 HOH B 14 314 73 HOH HOH . J 6 HOH B 15 315 49 HOH HOH . J 6 HOH B 16 316 33 HOH HOH . J 6 HOH B 17 317 75 HOH HOH . J 6 HOH B 18 318 36 HOH HOH . J 6 HOH B 19 319 46 HOH HOH . J 6 HOH B 20 320 70 HOH HOH . J 6 HOH B 21 321 72 HOH HOH . J 6 HOH B 22 322 8 HOH HOH . J 6 HOH B 23 323 40 HOH HOH . J 6 HOH B 24 324 64 HOH HOH . J 6 HOH B 25 325 11 HOH HOH . J 6 HOH B 26 326 13 HOH HOH . J 6 HOH B 27 327 14 HOH HOH . J 6 HOH B 28 328 68 HOH HOH . J 6 HOH B 29 329 18 HOH HOH . J 6 HOH B 30 330 43 HOH HOH . J 6 HOH B 31 331 6 HOH HOH . J 6 HOH B 32 332 45 HOH HOH . J 6 HOH B 33 333 44 HOH HOH . J 6 HOH B 34 334 76 HOH HOH . J 6 HOH B 35 335 77 HOH HOH . J 6 HOH B 36 336 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLV . . . H 5 37.093 -24.864 -14.615 1 68.93 ? C1 GLV 204 B 1 HETATM 2 O O1 GLV . . . H 5 36.141 -24.906 -13.569 1 58 ? O1 GLV 204 B 1 HETATM 3 C C2 GLV . . . H 5 38.383 -25.575 -14.223 1 66.91 ? C2 GLV 204 B 1 HETATM 4 O O2 GLV . . . H 5 38.496 -26.777 -14.955 1 61.6 ? O2 GLV 204 B 1 HETATM 5 O O3 GLV . . . H 5 39.373 -22.75 -14.613 1 73.61 ? O3 GLV 204 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 434 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #