data_5EDF # _model_server_result.job_id ZIFnRfu8JsPSG1yDa_P5iA _model_server_result.datetime_utc '2024-10-19 08:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5edf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5EDF # _exptl.entry_id 5EDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 42.02 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AZIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EDF _cell.length_a 38.293 _cell.length_b 38.829 _cell.length_c 165.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 150 1_555 A SG CYS 185 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A C PRO 11 A PRO 53 1_555 A N MSE 12 A MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C MSE 12 A MSE 54 1_555 A N THR 13 A THR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LYS 27 A LYS 69 1_555 A N MSE 28 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 28 A MSE 70 1_555 A N VAL 29 A VAL 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C THR 113 A THR 155 1_555 A N MSE 114 A MSE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 114 A MSE 156 1_555 A N GLY 115 A GLY 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale7 A C LYS 125 A LYS 167 1_555 A N MSE 126 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 126 A MSE 168 1_555 A N PRO 127 A PRO 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? metalc ? metalc1 C OH2 1PE . A 1PE 302 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'N3 -1' _chem_comp.formula_weight 42.02 _chem_comp.id AZI _chem_comp.mon_nstd_flag . _chem_comp.name 'AZIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EDF _atom_sites.fract_transf_matrix[1][1] 0.026114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P6G A 1 301 1 P6G P6G . C 3 1PE A 1 302 1 1PE 1PE . D 4 NA A 1 303 1 NA NA . E 5 AZI A 1 304 1 AZI AZI . F 6 HOH A 1 401 333 HOH HOH . F 6 HOH A 2 402 334 HOH HOH . F 6 HOH A 3 403 328 HOH HOH . F 6 HOH A 4 404 107 HOH HOH . F 6 HOH A 5 405 268 HOH HOH . F 6 HOH A 6 406 253 HOH HOH . F 6 HOH A 7 407 206 HOH HOH . F 6 HOH A 8 408 294 HOH HOH . F 6 HOH A 9 409 55 HOH HOH . F 6 HOH A 10 410 245 HOH HOH . F 6 HOH A 11 411 134 HOH HOH . F 6 HOH A 12 412 343 HOH HOH . F 6 HOH A 13 413 192 HOH HOH . F 6 HOH A 14 414 50 HOH HOH . F 6 HOH A 15 415 131 HOH HOH . F 6 HOH A 16 416 129 HOH HOH . F 6 HOH A 17 417 94 HOH HOH . F 6 HOH A 18 418 342 HOH HOH . F 6 HOH A 19 419 61 HOH HOH . F 6 HOH A 20 420 37 HOH HOH . F 6 HOH A 21 421 295 HOH HOH . F 6 HOH A 22 422 113 HOH HOH . F 6 HOH A 23 423 190 HOH HOH . F 6 HOH A 24 424 70 HOH HOH . F 6 HOH A 25 425 59 HOH HOH . F 6 HOH A 26 426 147 HOH HOH . F 6 HOH A 27 427 14 HOH HOH . F 6 HOH A 28 428 1 HOH HOH . F 6 HOH A 29 429 226 HOH HOH . F 6 HOH A 30 430 180 HOH HOH . F 6 HOH A 31 431 97 HOH HOH . F 6 HOH A 32 432 23 HOH HOH . F 6 HOH A 33 433 77 HOH HOH . F 6 HOH A 34 434 174 HOH HOH . F 6 HOH A 35 435 244 HOH HOH . F 6 HOH A 36 436 10 HOH HOH . F 6 HOH A 37 437 63 HOH HOH . F 6 HOH A 38 438 145 HOH HOH . F 6 HOH A 39 439 20 HOH HOH . F 6 HOH A 40 440 199 HOH HOH . F 6 HOH A 41 441 283 HOH HOH . F 6 HOH A 42 442 65 HOH HOH . F 6 HOH A 43 443 88 HOH HOH . F 6 HOH A 44 444 262 HOH HOH . F 6 HOH A 45 445 103 HOH HOH . F 6 HOH A 46 446 24 HOH HOH . F 6 HOH A 47 447 79 HOH HOH . F 6 HOH A 48 448 82 HOH HOH . F 6 HOH A 49 449 54 HOH HOH . F 6 HOH A 50 450 12 HOH HOH . F 6 HOH A 51 451 13 HOH HOH . F 6 HOH A 52 452 125 HOH HOH . F 6 HOH A 53 453 4 HOH HOH . F 6 HOH A 54 454 95 HOH HOH . F 6 HOH A 55 455 56 HOH HOH . F 6 HOH A 56 456 184 HOH HOH . F 6 HOH A 57 457 148 HOH HOH . F 6 HOH A 58 458 160 HOH HOH . F 6 HOH A 59 459 255 HOH HOH . F 6 HOH A 60 460 267 HOH HOH . F 6 HOH A 61 461 286 HOH HOH . F 6 HOH A 62 462 141 HOH HOH . F 6 HOH A 63 463 115 HOH HOH . F 6 HOH A 64 464 329 HOH HOH . F 6 HOH A 65 465 151 HOH HOH . F 6 HOH A 66 466 137 HOH HOH . F 6 HOH A 67 467 93 HOH HOH . F 6 HOH A 68 468 200 HOH HOH . F 6 HOH A 69 469 16 HOH HOH . F 6 HOH A 70 470 49 HOH HOH . F 6 HOH A 71 471 53 HOH HOH . F 6 HOH A 72 472 89 HOH HOH . F 6 HOH A 73 473 40 HOH HOH . F 6 HOH A 74 474 350 HOH HOH . F 6 HOH A 75 475 66 HOH HOH . F 6 HOH A 76 476 297 HOH HOH . F 6 HOH A 77 477 133 HOH HOH . F 6 HOH A 78 478 22 HOH HOH . F 6 HOH A 79 479 15 HOH HOH . F 6 HOH A 80 480 127 HOH HOH . F 6 HOH A 81 481 289 HOH HOH . F 6 HOH A 82 482 230 HOH HOH . F 6 HOH A 83 483 32 HOH HOH . F 6 HOH A 84 484 73 HOH HOH . F 6 HOH A 85 485 217 HOH HOH . F 6 HOH A 86 486 62 HOH HOH . F 6 HOH A 87 487 104 HOH HOH . F 6 HOH A 88 488 45 HOH HOH . F 6 HOH A 89 489 221 HOH HOH . F 6 HOH A 90 490 109 HOH HOH . F 6 HOH A 91 491 278 HOH HOH . F 6 HOH A 92 492 135 HOH HOH . F 6 HOH A 93 493 58 HOH HOH . F 6 HOH A 94 494 118 HOH HOH . F 6 HOH A 95 495 25 HOH HOH . F 6 HOH A 96 496 51 HOH HOH . F 6 HOH A 97 497 26 HOH HOH . F 6 HOH A 98 498 164 HOH HOH . F 6 HOH A 99 499 5 HOH HOH . F 6 HOH A 100 500 33 HOH HOH . F 6 HOH A 101 501 81 HOH HOH . F 6 HOH A 102 502 225 HOH HOH . F 6 HOH A 103 503 84 HOH HOH . F 6 HOH A 104 504 219 HOH HOH . F 6 HOH A 105 505 299 HOH HOH . F 6 HOH A 106 506 28 HOH HOH . F 6 HOH A 107 507 290 HOH HOH . F 6 HOH A 108 508 215 HOH HOH . F 6 HOH A 109 509 100 HOH HOH . F 6 HOH A 110 510 344 HOH HOH . F 6 HOH A 111 511 30 HOH HOH . F 6 HOH A 112 512 47 HOH HOH . F 6 HOH A 113 513 42 HOH HOH . F 6 HOH A 114 514 52 HOH HOH . F 6 HOH A 115 515 67 HOH HOH . F 6 HOH A 116 516 347 HOH HOH . F 6 HOH A 117 517 243 HOH HOH . F 6 HOH A 118 518 123 HOH HOH . F 6 HOH A 119 519 87 HOH HOH . F 6 HOH A 120 520 3 HOH HOH . F 6 HOH A 121 521 296 HOH HOH . F 6 HOH A 122 522 96 HOH HOH . F 6 HOH A 123 523 44 HOH HOH . F 6 HOH A 124 524 8 HOH HOH . F 6 HOH A 125 525 27 HOH HOH . F 6 HOH A 126 526 273 HOH HOH . F 6 HOH A 127 527 254 HOH HOH . F 6 HOH A 128 528 261 HOH HOH . F 6 HOH A 129 529 36 HOH HOH . F 6 HOH A 130 530 241 HOH HOH . F 6 HOH A 131 531 9 HOH HOH . F 6 HOH A 132 532 71 HOH HOH . F 6 HOH A 133 533 276 HOH HOH . F 6 HOH A 134 534 11 HOH HOH . F 6 HOH A 135 535 43 HOH HOH . F 6 HOH A 136 536 130 HOH HOH . F 6 HOH A 137 537 2 HOH HOH . F 6 HOH A 138 538 348 HOH HOH . F 6 HOH A 139 539 124 HOH HOH . F 6 HOH A 140 540 122 HOH HOH . F 6 HOH A 141 541 17 HOH HOH . F 6 HOH A 142 542 31 HOH HOH . F 6 HOH A 143 543 210 HOH HOH . F 6 HOH A 144 544 188 HOH HOH . F 6 HOH A 145 545 281 HOH HOH . F 6 HOH A 146 546 287 HOH HOH . F 6 HOH A 147 547 46 HOH HOH . F 6 HOH A 148 548 233 HOH HOH . F 6 HOH A 149 549 99 HOH HOH . F 6 HOH A 150 550 288 HOH HOH . F 6 HOH A 151 551 60 HOH HOH . F 6 HOH A 152 552 69 HOH HOH . F 6 HOH A 153 553 68 HOH HOH . F 6 HOH A 154 554 165 HOH HOH . F 6 HOH A 155 555 21 HOH HOH . F 6 HOH A 156 556 80 HOH HOH . F 6 HOH A 157 557 234 HOH HOH . F 6 HOH A 158 558 153 HOH HOH . F 6 HOH A 159 559 6 HOH HOH . F 6 HOH A 160 560 72 HOH HOH . F 6 HOH A 161 561 78 HOH HOH . F 6 HOH A 162 562 220 HOH HOH . F 6 HOH A 163 563 38 HOH HOH . F 6 HOH A 164 564 207 HOH HOH . F 6 HOH A 165 565 144 HOH HOH . F 6 HOH A 166 566 18 HOH HOH . F 6 HOH A 167 567 112 HOH HOH . F 6 HOH A 168 568 117 HOH HOH . F 6 HOH A 169 569 354 HOH HOH . F 6 HOH A 170 570 41 HOH HOH . F 6 HOH A 171 571 341 HOH HOH . F 6 HOH A 172 572 204 HOH HOH . F 6 HOH A 173 573 150 HOH HOH . F 6 HOH A 174 574 179 HOH HOH . F 6 HOH A 175 575 19 HOH HOH . F 6 HOH A 176 576 29 HOH HOH . F 6 HOH A 177 577 35 HOH HOH . F 6 HOH A 178 578 116 HOH HOH . F 6 HOH A 179 579 352 HOH HOH . F 6 HOH A 180 580 108 HOH HOH . F 6 HOH A 181 581 325 HOH HOH . F 6 HOH A 182 582 275 HOH HOH . F 6 HOH A 183 583 106 HOH HOH . F 6 HOH A 184 584 353 HOH HOH . F 6 HOH A 185 585 126 HOH HOH . F 6 HOH A 186 586 224 HOH HOH . F 6 HOH A 187 587 146 HOH HOH . F 6 HOH A 188 588 136 HOH HOH . F 6 HOH A 189 589 351 HOH HOH . F 6 HOH A 190 590 303 HOH HOH . F 6 HOH A 191 591 304 HOH HOH . F 6 HOH A 192 592 64 HOH HOH . F 6 HOH A 193 593 74 HOH HOH . F 6 HOH A 194 594 284 HOH HOH . F 6 HOH A 195 595 232 HOH HOH . F 6 HOH A 196 596 114 HOH HOH . F 6 HOH A 197 597 280 HOH HOH . F 6 HOH A 198 598 282 HOH HOH . F 6 HOH A 199 599 349 HOH HOH . F 6 HOH A 200 600 139 HOH HOH . F 6 HOH A 201 601 311 HOH HOH . F 6 HOH A 202 602 346 HOH HOH . F 6 HOH A 203 603 310 HOH HOH . F 6 HOH A 204 604 291 HOH HOH . F 6 HOH A 205 605 250 HOH HOH . F 6 HOH A 206 606 34 HOH HOH . F 6 HOH A 207 607 317 HOH HOH . F 6 HOH A 208 608 189 HOH HOH . F 6 HOH A 209 609 7 HOH HOH . F 6 HOH A 210 610 302 HOH HOH . F 6 HOH A 211 611 86 HOH HOH . F 6 HOH A 212 612 105 HOH HOH . F 6 HOH A 213 613 48 HOH HOH . F 6 HOH A 214 614 260 HOH HOH . F 6 HOH A 215 615 156 HOH HOH . F 6 HOH A 216 616 231 HOH HOH . F 6 HOH A 217 617 76 HOH HOH . F 6 HOH A 218 618 101 HOH HOH . F 6 HOH A 219 619 266 HOH HOH . F 6 HOH A 220 620 269 HOH HOH . F 6 HOH A 221 621 242 HOH HOH . F 6 HOH A 222 622 319 HOH HOH . F 6 HOH A 223 623 337 HOH HOH . F 6 HOH A 224 624 138 HOH HOH . F 6 HOH A 225 625 203 HOH HOH . F 6 HOH A 226 626 91 HOH HOH . F 6 HOH A 227 627 320 HOH HOH . F 6 HOH A 228 628 257 HOH HOH . F 6 HOH A 229 629 323 HOH HOH . F 6 HOH A 230 630 111 HOH HOH . F 6 HOH A 231 631 155 HOH HOH . F 6 HOH A 232 632 154 HOH HOH . F 6 HOH A 233 633 209 HOH HOH . F 6 HOH A 234 634 178 HOH HOH . F 6 HOH A 235 635 169 HOH HOH . F 6 HOH A 236 636 292 HOH HOH . F 6 HOH A 237 637 143 HOH HOH . F 6 HOH A 238 638 152 HOH HOH . F 6 HOH A 239 639 170 HOH HOH . F 6 HOH A 240 640 83 HOH HOH . F 6 HOH A 241 641 185 HOH HOH . F 6 HOH A 242 642 120 HOH HOH . F 6 HOH A 243 643 140 HOH HOH . F 6 HOH A 244 644 264 HOH HOH . F 6 HOH A 245 645 167 HOH HOH . F 6 HOH A 246 646 228 HOH HOH . F 6 HOH A 247 647 331 HOH HOH . F 6 HOH A 248 648 340 HOH HOH . F 6 HOH A 249 649 212 HOH HOH . F 6 HOH A 250 650 173 HOH HOH . F 6 HOH A 251 651 321 HOH HOH . F 6 HOH A 252 652 249 HOH HOH . F 6 HOH A 253 653 159 HOH HOH . F 6 HOH A 254 654 259 HOH HOH . F 6 HOH A 255 655 332 HOH HOH . F 6 HOH A 256 656 301 HOH HOH . F 6 HOH A 257 657 216 HOH HOH . F 6 HOH A 258 658 258 HOH HOH . F 6 HOH A 259 659 345 HOH HOH . F 6 HOH A 260 660 326 HOH HOH . F 6 HOH A 261 661 186 HOH HOH . F 6 HOH A 262 662 211 HOH HOH . F 6 HOH A 263 663 327 HOH HOH . F 6 HOH A 264 664 201 HOH HOH . F 6 HOH A 265 665 183 HOH HOH . F 6 HOH A 266 666 335 HOH HOH . F 6 HOH A 267 667 191 HOH HOH . F 6 HOH A 268 668 324 HOH HOH . F 6 HOH A 269 669 202 HOH HOH . F 6 HOH A 270 670 293 HOH HOH . F 6 HOH A 271 671 196 HOH HOH . F 6 HOH A 272 672 198 HOH HOH . F 6 HOH A 273 673 208 HOH HOH . F 6 HOH A 274 674 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AZI . A . E 5 12.999 3 4.539 0.5 12.53 ? N1 AZI 304 A 1 HETATM 2 N N2 AZI . A . E 5 13.883 2.671 5.132 0.5 17.87 ? N2 AZI 304 A 1 HETATM 3 N N3 AZI . A . E 5 14.805 2.344 5.763 0.5 19.35 ? N3 AZI 304 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #