data_5EDL # _model_server_result.job_id 6niJrM5X1LhHH8PZWYcKBA _model_server_result.datetime_utc '2024-12-01 00:08:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5edl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5EDL # _exptl.entry_id 5EDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EDL _cell.length_a 70.713 _cell.length_b 70.713 _cell.length_c 196.839 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 237 n n C2 C1 MPG sing 238 n n C3 C4 MPG sing 239 n n C4 C5 MPG sing 240 n n C5 C6 MPG sing 241 n n C6 C7 MPG sing 242 n n C7 C8 MPG sing 243 n n C8 C9 MPG sing 244 n n C9 C10 MPG doub 245 z n C10 C11 MPG sing 246 n n C11 C12 MPG sing 247 n n C12 C13 MPG sing 248 n n C13 C14 MPG sing 249 n n C14 C15 MPG sing 250 n n C15 C16 MPG sing 251 n n C16 C17 MPG sing 252 n n C17 C18 MPG sing 253 n n O1 C1 MPG sing 254 n n O1 CX3 MPG sing 255 n n CXD O2 MPG sing 256 n n CXD C21 MPG sing 257 n n CXD CX3 MPG sing 258 n n C21 O3 MPG sing 259 n n C2 H21C MPG sing 260 n n C2 H22C MPG sing 261 n n C3 H31C MPG sing 262 n n C3 H32C MPG sing 263 n n CX3 O4 MPG doub 264 n n C4 H41C MPG sing 265 n n C4 H42C MPG sing 266 n n C5 H51C MPG sing 267 n n C5 H52C MPG sing 268 n n C6 H61C MPG sing 269 n n C6 H62C MPG sing 270 n n C7 H71C MPG sing 271 n n C7 H72C MPG sing 272 n n C8 H81C MPG sing 273 n n C8 H82C MPG sing 274 n n C9 H9 MPG sing 275 n n C10 H10 MPG sing 276 n n C11 H111 MPG sing 277 n n C11 H112 MPG sing 278 n n C12 H121 MPG sing 279 n n C12 H122 MPG sing 280 n n C13 H131 MPG sing 281 n n C13 H132 MPG sing 282 n n C14 H141 MPG sing 283 n n C14 H142 MPG sing 284 n n C15 H151 MPG sing 285 n n C15 H152 MPG sing 286 n n C16 H161 MPG sing 287 n n C16 H162 MPG sing 288 n n C17 H171 MPG sing 289 n n C17 H172 MPG sing 290 n n C18 H181 MPG sing 291 n n C18 H182 MPG sing 292 n n C18 H183 MPG sing 293 n n C1 HX31 MPG sing 294 n n C1 HX32 MPG sing 295 n n CXD HXD MPG sing 296 n n O2 H2 MPG sing 297 n n C21 H211 MPG sing 298 n n C21 H212 MPG sing 299 n n O3 H3 MPG sing 300 n n # _atom_sites.entry_id 5EDL _atom_sites.fract_transf_matrix[1][1] 0.014142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VIB A 1 201 1 VIB VIB . C 3 MPG A 1 202 1 MPG MPG . D 3 MPG A 1 203 2 MPG MPG . E 4 HOH A 1 301 44 HOH HOH . E 4 HOH A 2 302 14 HOH HOH . E 4 HOH A 3 303 22 HOH HOH . E 4 HOH A 4 304 32 HOH HOH . E 4 HOH A 5 305 16 HOH HOH . E 4 HOH A 6 306 28 HOH HOH . E 4 HOH A 7 307 72 HOH HOH . E 4 HOH A 8 308 13 HOH HOH . E 4 HOH A 9 309 15 HOH HOH . E 4 HOH A 10 310 3 HOH HOH . E 4 HOH A 11 311 55 HOH HOH . E 4 HOH A 12 312 2 HOH HOH . E 4 HOH A 13 313 29 HOH HOH . E 4 HOH A 14 314 51 HOH HOH . E 4 HOH A 15 315 52 HOH HOH . E 4 HOH A 16 316 11 HOH HOH . E 4 HOH A 17 317 70 HOH HOH . E 4 HOH A 18 318 40 HOH HOH . E 4 HOH A 19 319 6 HOH HOH . E 4 HOH A 20 320 56 HOH HOH . E 4 HOH A 21 321 17 HOH HOH . E 4 HOH A 22 322 23 HOH HOH . E 4 HOH A 23 323 35 HOH HOH . E 4 HOH A 24 324 20 HOH HOH . E 4 HOH A 25 325 12 HOH HOH . E 4 HOH A 26 326 50 HOH HOH . E 4 HOH A 27 327 39 HOH HOH . E 4 HOH A 28 328 64 HOH HOH . E 4 HOH A 29 329 38 HOH HOH . E 4 HOH A 30 330 31 HOH HOH . E 4 HOH A 31 331 41 HOH HOH . E 4 HOH A 32 332 9 HOH HOH . E 4 HOH A 33 333 5 HOH HOH . E 4 HOH A 34 334 10 HOH HOH . E 4 HOH A 35 335 60 HOH HOH . E 4 HOH A 36 336 7 HOH HOH . E 4 HOH A 37 337 37 HOH HOH . E 4 HOH A 38 338 1 HOH HOH . E 4 HOH A 39 339 19 HOH HOH . E 4 HOH A 40 340 4 HOH HOH . E 4 HOH A 41 341 18 HOH HOH . E 4 HOH A 42 342 68 HOH HOH . E 4 HOH A 43 343 34 HOH HOH . E 4 HOH A 44 344 67 HOH HOH . E 4 HOH A 45 345 8 HOH HOH . E 4 HOH A 46 346 62 HOH HOH . E 4 HOH A 47 347 76 HOH HOH . E 4 HOH A 48 348 46 HOH HOH . E 4 HOH A 49 349 63 HOH HOH . E 4 HOH A 50 350 65 HOH HOH . E 4 HOH A 51 351 49 HOH HOH . E 4 HOH A 52 352 30 HOH HOH . E 4 HOH A 53 353 36 HOH HOH . E 4 HOH A 54 354 33 HOH HOH . E 4 HOH A 55 355 61 HOH HOH . E 4 HOH A 56 356 57 HOH HOH . E 4 HOH A 57 357 84 HOH HOH . E 4 HOH A 58 358 80 HOH HOH . E 4 HOH A 59 359 43 HOH HOH . E 4 HOH A 60 360 74 HOH HOH . E 4 HOH A 61 361 54 HOH HOH . E 4 HOH A 62 362 21 HOH HOH . E 4 HOH A 63 363 24 HOH HOH . E 4 HOH A 64 364 77 HOH HOH . E 4 HOH A 65 365 53 HOH HOH . E 4 HOH A 66 366 73 HOH HOH . E 4 HOH A 67 367 25 HOH HOH . E 4 HOH A 68 368 66 HOH HOH . E 4 HOH A 69 369 69 HOH HOH . E 4 HOH A 70 370 58 HOH HOH . E 4 HOH A 71 371 26 HOH HOH . E 4 HOH A 72 372 47 HOH HOH . E 4 HOH A 73 373 27 HOH HOH . E 4 HOH A 74 374 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . C 3 8.542 4.33 72.017 1 58.09 ? C2 MPG 202 A 1 HETATM 2 C C3 MPG . . . C 3 8.108 4.439 73.462 1 54.89 ? C3 MPG 202 A 1 HETATM 3 C C4 MPG . . . C 3 7.143 5.595 73.615 1 52.01 ? C4 MPG 202 A 1 HETATM 4 C C5 MPG . . . C 3 5.8 5.197 73.051 1 58.9 ? C5 MPG 202 A 1 HETATM 5 C C6 MPG . . . C 3 4.724 5.436 74.082 1 61.29 ? C6 MPG 202 A 1 HETATM 6 C C7 MPG . . . C 3 4.485 6.92 74.204 1 62.48 ? C7 MPG 202 A 1 HETATM 7 C C8 MPG . . . C 3 3.136 7.167 74.841 1 64.33 ? C8 MPG 202 A 1 HETATM 8 C C9 MPG . . . C 3 3.283 7.093 76.344 1 66.86 ? C9 MPG 202 A 1 HETATM 9 C C10 MPG . . . C 3 2.286 7.452 77.184 1 64.09 ? C10 MPG 202 A 1 HETATM 10 C C11 MPG . . . C 3 0.947 7.952 76.689 1 62.89 ? C11 MPG 202 A 1 HETATM 11 C C12 MPG . . . C 3 -0.137 7.135 77.358 1 65.16 ? C12 MPG 202 A 1 HETATM 12 C C13 MPG . . . C 3 -0.167 7.418 78.849 1 61.23 ? C13 MPG 202 A 1 HETATM 13 C C14 MPG . . . C 3 0.381 6.254 79.65 1 54.64 ? C14 MPG 202 A 1 HETATM 14 C C15 MPG . . . C 3 -0.355 6.138 80.967 1 56.53 ? C15 MPG 202 A 1 HETATM 15 C C16 MPG . . . C 3 0.638 5.968 82.094 1 58.25 ? C16 MPG 202 A 1 HETATM 16 C C17 MPG . . . C 3 -0.077 6.033 83.423 1 55.98 ? C17 MPG 202 A 1 HETATM 17 C C18 MPG . . . C 3 0.897 6.511 84.476 1 53.64 ? C18 MPG 202 A 1 HETATM 18 O O1 MPG . . . C 3 10.772 3.618 71.582 1 71.2 ? O1 MPG 202 A 1 HETATM 19 C C1 MPG . . . C 3 9.473 3.149 71.859 1 65.66 ? C1 MPG 202 A 1 HETATM 20 H H21C MPG . . . C 3 9.007 5.149 71.753 1 69.7 ? H21C MPG 202 A 1 HETATM 21 H H22C MPG . . . C 3 7.756 4.203 71.449 1 69.7 ? H22C MPG 202 A 1 HETATM 22 H H31C MPG . . . C 3 7.668 3.609 73.734 1 65.87 ? H31C MPG 202 A 1 HETATM 23 H H32C MPG . . . C 3 8.892 4.592 74.027 1 65.87 ? H32C MPG 202 A 1 HETATM 24 H H41C MPG . . . C 3 7.046 5.817 74.563 1 62.41 ? H41C MPG 202 A 1 HETATM 25 H H42C MPG . . . C 3 7.484 6.373 73.13 1 62.41 ? H42C MPG 202 A 1 HETATM 26 H H51C MPG . . . C 3 5.611 5.731 72.254 1 70.68 ? H51C MPG 202 A 1 HETATM 27 H H52C MPG . . . C 3 5.816 4.249 72.811 1 70.68 ? H52C MPG 202 A 1 HETATM 28 H H61C MPG . . . C 3 3.898 4.992 73.803 1 73.55 ? H61C MPG 202 A 1 HETATM 29 H H62C MPG . . . C 3 5.013 5.078 74.946 1 73.55 ? H62C MPG 202 A 1 HETATM 30 H H71C MPG . . . C 3 5.185 7.318 74.759 1 74.98 ? H71C MPG 202 A 1 HETATM 31 H H72C MPG . . . C 3 4.504 7.327 73.314 1 74.98 ? H72C MPG 202 A 1 HETATM 32 H H81C MPG . . . C 3 2.811 8.054 74.587 1 77.19 ? H81C MPG 202 A 1 HETATM 33 H H82C MPG . . . C 3 2.501 6.487 74.54 1 77.19 ? H82C MPG 202 A 1 HETATM 34 H H9 MPG . . . C 3 4.126 6.777 76.721 1 80.23 ? H9 MPG 202 A 1 HETATM 35 H H10 MPG . . . C 3 2.435 7.384 78.146 1 76.9 ? H10 MPG 202 A 1 HETATM 36 H H111 MPG . . . C 3 0.84 8.896 76.921 1 75.47 ? H111 MPG 202 A 1 HETATM 37 H H112 MPG . . . C 3 0.891 7.842 75.719 1 75.47 ? H112 MPG 202 A 1 HETATM 38 H H121 MPG . . . C 3 -1.004 7.367 76.968 1 78.19 ? H121 MPG 202 A 1 HETATM 39 H H122 MPG . . . C 3 0.038 6.184 77.213 1 78.19 ? H122 MPG 202 A 1 HETATM 40 H H131 MPG . . . C 3 0.371 8.214 79.034 1 73.47 ? H131 MPG 202 A 1 HETATM 41 H H132 MPG . . . C 3 -1.091 7.587 79.123 1 73.47 ? H132 MPG 202 A 1 HETATM 42 H H141 MPG . . . C 3 0.266 5.427 79.141 1 65.57 ? H141 MPG 202 A 1 HETATM 43 H H142 MPG . . . C 3 1.333 6.399 79.823 1 65.57 ? H142 MPG 202 A 1 HETATM 44 H H151 MPG . . . C 3 -0.882 6.949 81.118 1 67.84 ? H151 MPG 202 A 1 HETATM 45 H H152 MPG . . . C 3 -0.952 5.363 80.939 1 67.84 ? H152 MPG 202 A 1 HETATM 46 H H161 MPG . . . C 3 1.082 5.101 82.006 1 69.9 ? H161 MPG 202 A 1 HETATM 47 H H162 MPG . . . C 3 1.306 6.681 82.049 1 69.9 ? H162 MPG 202 A 1 HETATM 48 H H171 MPG . . . C 3 -0.827 6.657 83.362 1 67.18 ? H171 MPG 202 A 1 HETATM 49 H H172 MPG . . . C 3 -0.408 5.144 83.662 1 67.18 ? H172 MPG 202 A 1 HETATM 50 H H181 MPG . . . C 3 1.2 7.416 84.254 1 64.37 ? H181 MPG 202 A 1 HETATM 51 H H182 MPG . . . C 3 0.454 6.521 85.351 1 64.37 ? H182 MPG 202 A 1 HETATM 52 H H183 MPG . . . C 3 1.667 5.907 84.507 1 64.37 ? H183 MPG 202 A 1 HETATM 53 H HX31 MPG . . . C 3 9.164 2.586 71.119 1 78.79 ? HX31 MPG 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #