data_5EDL
#
_model_server_result.job_id            FdGFk8LtRmkhaYW5gXtC2Q 
_model_server_result.datetime_utc      '2024-12-01 00:16:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5edl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5EDL 
#
_exptl.entry_id    5EDL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EDL 
_cell.length_a            70.713 
_cell.length_b            70.713 
_cell.length_c            196.839 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EDL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                MPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 MPG sing 237 n n 
C2 C1 MPG sing 238 n n 
C3 C4 MPG sing 239 n n 
C4 C5 MPG sing 240 n n 
C5 C6 MPG sing 241 n n 
C6 C7 MPG sing 242 n n 
C7 C8 MPG sing 243 n n 
C8 C9 MPG sing 244 n n 
C9 C10 MPG doub 245 z n 
C10 C11 MPG sing 246 n n 
C11 C12 MPG sing 247 n n 
C12 C13 MPG sing 248 n n 
C13 C14 MPG sing 249 n n 
C14 C15 MPG sing 250 n n 
C15 C16 MPG sing 251 n n 
C16 C17 MPG sing 252 n n 
C17 C18 MPG sing 253 n n 
O1 C1 MPG sing 254 n n 
O1 CX3 MPG sing 255 n n 
CXD O2 MPG sing 256 n n 
CXD C21 MPG sing 257 n n 
CXD CX3 MPG sing 258 n n 
C21 O3 MPG sing 259 n n 
C2 H21C MPG sing 260 n n 
C2 H22C MPG sing 261 n n 
C3 H31C MPG sing 262 n n 
C3 H32C MPG sing 263 n n 
CX3 O4 MPG doub 264 n n 
C4 H41C MPG sing 265 n n 
C4 H42C MPG sing 266 n n 
C5 H51C MPG sing 267 n n 
C5 H52C MPG sing 268 n n 
C6 H61C MPG sing 269 n n 
C6 H62C MPG sing 270 n n 
C7 H71C MPG sing 271 n n 
C7 H72C MPG sing 272 n n 
C8 H81C MPG sing 273 n n 
C8 H82C MPG sing 274 n n 
C9 H9 MPG sing 275 n n 
C10 H10 MPG sing 276 n n 
C11 H111 MPG sing 277 n n 
C11 H112 MPG sing 278 n n 
C12 H121 MPG sing 279 n n 
C12 H122 MPG sing 280 n n 
C13 H131 MPG sing 281 n n 
C13 H132 MPG sing 282 n n 
C14 H141 MPG sing 283 n n 
C14 H142 MPG sing 284 n n 
C15 H151 MPG sing 285 n n 
C15 H152 MPG sing 286 n n 
C16 H161 MPG sing 287 n n 
C16 H162 MPG sing 288 n n 
C17 H171 MPG sing 289 n n 
C17 H172 MPG sing 290 n n 
C18 H181 MPG sing 291 n n 
C18 H182 MPG sing 292 n n 
C18 H183 MPG sing 293 n n 
C1 HX31 MPG sing 294 n n 
C1 HX32 MPG sing 295 n n 
CXD HXD MPG sing 296 n n 
O2 H2 MPG sing 297 n n 
C21 H211 MPG sing 298 n n 
C21 H212 MPG sing 299 n n 
O3 H3 MPG sing 300 n n 
#
_atom_sites.entry_id                     5EDL 
_atom_sites.fract_transf_matrix[1][1]    0.014142 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014142 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 VIB A 1 201 1 VIB VIB . 
C 3 MPG A 1 202 1 MPG MPG . 
D 3 MPG A 1 203 2 MPG MPG . 
E 4 HOH A 1 301 44 HOH HOH . 
E 4 HOH A 2 302 14 HOH HOH . 
E 4 HOH A 3 303 22 HOH HOH . 
E 4 HOH A 4 304 32 HOH HOH . 
E 4 HOH A 5 305 16 HOH HOH . 
E 4 HOH A 6 306 28 HOH HOH . 
E 4 HOH A 7 307 72 HOH HOH . 
E 4 HOH A 8 308 13 HOH HOH . 
E 4 HOH A 9 309 15 HOH HOH . 
E 4 HOH A 10 310 3 HOH HOH . 
E 4 HOH A 11 311 55 HOH HOH . 
E 4 HOH A 12 312 2 HOH HOH . 
E 4 HOH A 13 313 29 HOH HOH . 
E 4 HOH A 14 314 51 HOH HOH . 
E 4 HOH A 15 315 52 HOH HOH . 
E 4 HOH A 16 316 11 HOH HOH . 
E 4 HOH A 17 317 70 HOH HOH . 
E 4 HOH A 18 318 40 HOH HOH . 
E 4 HOH A 19 319 6 HOH HOH . 
E 4 HOH A 20 320 56 HOH HOH . 
E 4 HOH A 21 321 17 HOH HOH . 
E 4 HOH A 22 322 23 HOH HOH . 
E 4 HOH A 23 323 35 HOH HOH . 
E 4 HOH A 24 324 20 HOH HOH . 
E 4 HOH A 25 325 12 HOH HOH . 
E 4 HOH A 26 326 50 HOH HOH . 
E 4 HOH A 27 327 39 HOH HOH . 
E 4 HOH A 28 328 64 HOH HOH . 
E 4 HOH A 29 329 38 HOH HOH . 
E 4 HOH A 30 330 31 HOH HOH . 
E 4 HOH A 31 331 41 HOH HOH . 
E 4 HOH A 32 332 9 HOH HOH . 
E 4 HOH A 33 333 5 HOH HOH . 
E 4 HOH A 34 334 10 HOH HOH . 
E 4 HOH A 35 335 60 HOH HOH . 
E 4 HOH A 36 336 7 HOH HOH . 
E 4 HOH A 37 337 37 HOH HOH . 
E 4 HOH A 38 338 1 HOH HOH . 
E 4 HOH A 39 339 19 HOH HOH . 
E 4 HOH A 40 340 4 HOH HOH . 
E 4 HOH A 41 341 18 HOH HOH . 
E 4 HOH A 42 342 68 HOH HOH . 
E 4 HOH A 43 343 34 HOH HOH . 
E 4 HOH A 44 344 67 HOH HOH . 
E 4 HOH A 45 345 8 HOH HOH . 
E 4 HOH A 46 346 62 HOH HOH . 
E 4 HOH A 47 347 76 HOH HOH . 
E 4 HOH A 48 348 46 HOH HOH . 
E 4 HOH A 49 349 63 HOH HOH . 
E 4 HOH A 50 350 65 HOH HOH . 
E 4 HOH A 51 351 49 HOH HOH . 
E 4 HOH A 52 352 30 HOH HOH . 
E 4 HOH A 53 353 36 HOH HOH . 
E 4 HOH A 54 354 33 HOH HOH . 
E 4 HOH A 55 355 61 HOH HOH . 
E 4 HOH A 56 356 57 HOH HOH . 
E 4 HOH A 57 357 84 HOH HOH . 
E 4 HOH A 58 358 80 HOH HOH . 
E 4 HOH A 59 359 43 HOH HOH . 
E 4 HOH A 60 360 74 HOH HOH . 
E 4 HOH A 61 361 54 HOH HOH . 
E 4 HOH A 62 362 21 HOH HOH . 
E 4 HOH A 63 363 24 HOH HOH . 
E 4 HOH A 64 364 77 HOH HOH . 
E 4 HOH A 65 365 53 HOH HOH . 
E 4 HOH A 66 366 73 HOH HOH . 
E 4 HOH A 67 367 25 HOH HOH . 
E 4 HOH A 68 368 66 HOH HOH . 
E 4 HOH A 69 369 69 HOH HOH . 
E 4 HOH A 70 370 58 HOH HOH . 
E 4 HOH A 71 371 26 HOH HOH . 
E 4 HOH A 72 372 47 HOH HOH . 
E 4 HOH A 73 373 27 HOH HOH . 
E 4 HOH A 74 374 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 MPG . . . D 3 7.297 4.952 60.218 1 52.09 ? C2 MPG 203 A 1 
HETATM 2 C C3 MPG . . . D 3 8.505 5.388 61.024 1 52.05 ? C3 MPG 203 A 1 
HETATM 3 C C4 MPG . . . D 3 8.461 4.73 62.386 1 50.38 ? C4 MPG 203 A 1 
HETATM 4 C C5 MPG . . . D 3 9.497 5.312 63.328 1 46.6 ? C5 MPG 203 A 1 
HETATM 5 C C6 MPG . . . D 3 9.232 4.762 64.715 1 47.26 ? C6 MPG 203 A 1 
HETATM 6 C C7 MPG . . . D 3 10.388 5.056 65.654 1 52.91 ? C7 MPG 203 A 1 
HETATM 7 C C8 MPG . . . D 3 10.041 6.193 66.597 1 58.25 ? C8 MPG 203 A 1 
HETATM 8 C C9 MPG . . . D 3 9.618 5.672 67.955 1 58.06 ? C9 MPG 203 A 1 
HETATM 9 C C10 MPG . . . D 3 10.445 5.782 69.018 1 58.53 ? C10 MPG 203 A 1 
HETATM 10 C C11 MPG . . . D 3 11.81 6.429 68.875 1 57.13 ? C11 MPG 203 A 1 
HETATM 11 C C12 MPG . . . D 3 12.828 5.697 69.726 1 52.82 ? C12 MPG 203 A 1 
HETATM 12 C C13 MPG . . . D 3 13.843 6.679 70.268 1 50.76 ? C13 MPG 203 A 1 
HETATM 13 O O1 MPG . . . D 3 5.986 5.995 58.5 1 64.81 ? O1 MPG 203 A 1 
HETATM 14 C C1 MPG . . . D 3 7.301 5.636 58.871 1 57.02 ? C1 MPG 203 A 1 
HETATM 15 C CXD MPG . . . D 3 4.619 6.551 56.424 1 73.87 ? CXD MPG 203 A 1 
HETATM 16 O O2 MPG . . . D 3 3.353 6.308 56.99 1 78.15 ? O2 MPG 203 A 1 
HETATM 17 C C21 MPG . . . D 3 4.587 6.167 54.959 1 76.2 ? C21 MPG 203 A 1 
HETATM 18 O O3 MPG . . . D 3 3.867 7.134 54.224 1 77.4 ? O3 MPG 203 A 1 
HETATM 19 O O4 MPG . . . D 3 6.281 4.869 56.553 1 66.37 ? O4 MPG 203 A 1 
HETATM 20 C CX3 MPG . . . D 3 5.679 5.741 57.148 1 67.99 ? CX3 MPG 203 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#