data_5EDT # _model_server_result.job_id wdShNXyVSJPAO9ZxPCLepA _model_server_result.datetime_utc '2024-11-14 16:37:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5edt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 5EDT # _exptl.entry_id 5EDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EDT _cell.length_a 77 _cell.length_b 77 _cell.length_c 263 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 344 A CYS 345 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 B FE HEM . A HEM 401 1_555 N O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 390 n n S O2 SO4 doub 391 n n S O3 SO4 sing 392 n n S O4 SO4 sing 393 n n # _atom_sites.entry_id 5EDT _atom_sites.fract_transf_matrix[1][1] 0.012987 _atom_sites.fract_transf_matrix[1][2] 0.007498 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 397 HEM HEM . C 3 5MK A 1 402 398 5MK DRG . D 4 SO4 A 1 403 399 SO4 SO4 . E 4 SO4 A 1 404 400 SO4 SO4 . F 4 SO4 A 1 405 401 SO4 SO4 . G 4 SO4 A 1 406 402 SO4 SO4 . H 4 SO4 A 1 407 403 SO4 SO4 . I 4 SO4 A 1 408 404 SO4 SO4 . J 4 SO4 A 1 409 405 SO4 SO4 . K 4 SO4 A 1 410 406 SO4 SO4 . L 4 SO4 A 1 411 407 SO4 SO4 . M 4 SO4 A 1 412 408 SO4 SO4 . N 5 HOH A 1 501 502 HOH HOH . N 5 HOH A 2 502 471 HOH HOH . N 5 HOH A 3 503 415 HOH HOH . N 5 HOH A 4 504 440 HOH HOH . N 5 HOH A 5 505 538 HOH HOH . N 5 HOH A 6 506 531 HOH HOH . N 5 HOH A 7 507 564 HOH HOH . N 5 HOH A 8 508 617 HOH HOH . N 5 HOH A 9 509 620 HOH HOH . N 5 HOH A 10 510 561 HOH HOH . N 5 HOH A 11 511 499 HOH HOH . N 5 HOH A 12 512 597 HOH HOH . N 5 HOH A 13 513 521 HOH HOH . N 5 HOH A 14 514 527 HOH HOH . N 5 HOH A 15 515 543 HOH HOH . N 5 HOH A 16 516 616 HOH HOH . N 5 HOH A 17 517 602 HOH HOH . N 5 HOH A 18 518 428 HOH HOH . N 5 HOH A 19 519 515 HOH HOH . N 5 HOH A 20 520 517 HOH HOH . N 5 HOH A 21 521 493 HOH HOH . N 5 HOH A 22 522 479 HOH HOH . N 5 HOH A 23 523 552 HOH HOH . N 5 HOH A 24 524 418 HOH HOH . N 5 HOH A 25 525 596 HOH HOH . N 5 HOH A 26 526 537 HOH HOH . N 5 HOH A 27 527 568 HOH HOH . N 5 HOH A 28 528 447 HOH HOH . N 5 HOH A 29 529 579 HOH HOH . N 5 HOH A 30 530 430 HOH HOH . N 5 HOH A 31 531 546 HOH HOH . N 5 HOH A 32 532 481 HOH HOH . N 5 HOH A 33 533 478 HOH HOH . N 5 HOH A 34 534 605 HOH HOH . N 5 HOH A 35 535 509 HOH HOH . N 5 HOH A 36 536 508 HOH HOH . N 5 HOH A 37 537 476 HOH HOH . N 5 HOH A 38 538 421 HOH HOH . N 5 HOH A 39 539 485 HOH HOH . N 5 HOH A 40 540 497 HOH HOH . N 5 HOH A 41 541 548 HOH HOH . N 5 HOH A 42 542 569 HOH HOH . N 5 HOH A 43 543 459 HOH HOH . N 5 HOH A 44 544 606 HOH HOH . N 5 HOH A 45 545 494 HOH HOH . N 5 HOH A 46 546 514 HOH HOH . N 5 HOH A 47 547 413 HOH HOH . N 5 HOH A 48 548 600 HOH HOH . N 5 HOH A 49 549 491 HOH HOH . N 5 HOH A 50 550 492 HOH HOH . N 5 HOH A 51 551 598 HOH HOH . N 5 HOH A 52 552 465 HOH HOH . N 5 HOH A 53 553 575 HOH HOH . N 5 HOH A 54 554 510 HOH HOH . N 5 HOH A 55 555 522 HOH HOH . N 5 HOH A 56 556 536 HOH HOH . N 5 HOH A 57 557 565 HOH HOH . N 5 HOH A 58 558 504 HOH HOH . N 5 HOH A 59 559 489 HOH HOH . N 5 HOH A 60 560 482 HOH HOH . N 5 HOH A 61 561 528 HOH HOH . N 5 HOH A 62 562 507 HOH HOH . N 5 HOH A 63 563 623 HOH HOH . N 5 HOH A 64 564 618 HOH HOH . N 5 HOH A 65 565 604 HOH HOH . N 5 HOH A 66 566 516 HOH HOH . N 5 HOH A 67 567 512 HOH HOH . N 5 HOH A 68 568 410 HOH HOH . N 5 HOH A 69 569 539 HOH HOH . N 5 HOH A 70 570 557 HOH HOH . N 5 HOH A 71 571 503 HOH HOH . N 5 HOH A 72 572 524 HOH HOH . N 5 HOH A 73 573 590 HOH HOH . N 5 HOH A 74 574 612 HOH HOH . N 5 HOH A 75 575 488 HOH HOH . N 5 HOH A 76 576 480 HOH HOH . N 5 HOH A 77 577 608 HOH HOH . N 5 HOH A 78 578 566 HOH HOH . N 5 HOH A 79 579 544 HOH HOH . N 5 HOH A 80 580 609 HOH HOH . N 5 HOH A 81 581 484 HOH HOH . N 5 HOH A 82 582 580 HOH HOH . N 5 HOH A 83 583 533 HOH HOH . N 5 HOH A 84 584 519 HOH HOH . N 5 HOH A 85 585 490 HOH HOH . N 5 HOH A 86 586 523 HOH HOH . N 5 HOH A 87 587 513 HOH HOH . N 5 HOH A 88 588 614 HOH HOH . N 5 HOH A 89 589 525 HOH HOH . N 5 HOH A 90 590 558 HOH HOH . N 5 HOH A 91 591 555 HOH HOH . N 5 HOH A 92 592 559 HOH HOH . N 5 HOH A 93 593 626 HOH HOH . N 5 HOH A 94 594 530 HOH HOH . N 5 HOH A 95 595 603 HOH HOH . N 5 HOH A 96 596 591 HOH HOH . N 5 HOH A 97 597 446 HOH HOH . N 5 HOH A 98 598 532 HOH HOH . N 5 HOH A 99 599 551 HOH HOH . N 5 HOH A 100 600 411 HOH HOH . N 5 HOH A 101 601 473 HOH HOH . N 5 HOH A 102 602 535 HOH HOH . N 5 HOH A 103 603 477 HOH HOH . N 5 HOH A 104 604 549 HOH HOH . N 5 HOH A 105 605 542 HOH HOH . N 5 HOH A 106 606 419 HOH HOH . N 5 HOH A 107 607 422 HOH HOH . N 5 HOH A 108 608 607 HOH HOH . N 5 HOH A 109 609 520 HOH HOH . N 5 HOH A 110 610 570 HOH HOH . N 5 HOH A 111 611 573 HOH HOH . N 5 HOH A 112 612 545 HOH HOH . N 5 HOH A 113 613 621 HOH HOH . N 5 HOH A 114 614 486 HOH HOH . N 5 HOH A 115 615 496 HOH HOH . N 5 HOH A 116 616 529 HOH HOH . N 5 HOH A 117 617 495 HOH HOH . N 5 HOH A 118 618 554 HOH HOH . N 5 HOH A 119 619 560 HOH HOH . N 5 HOH A 120 620 452 HOH HOH . N 5 HOH A 121 621 563 HOH HOH . N 5 HOH A 122 622 615 HOH HOH . N 5 HOH A 123 623 412 HOH HOH . N 5 HOH A 124 624 505 HOH HOH . N 5 HOH A 125 625 581 HOH HOH . N 5 HOH A 126 626 472 HOH HOH . N 5 HOH A 127 627 601 HOH HOH . N 5 HOH A 128 628 589 HOH HOH . N 5 HOH A 129 629 619 HOH HOH . N 5 HOH A 130 630 461 HOH HOH . N 5 HOH A 131 631 511 HOH HOH . N 5 HOH A 132 632 501 HOH HOH . N 5 HOH A 133 633 624 HOH HOH . N 5 HOH A 134 634 547 HOH HOH . N 5 HOH A 135 635 550 HOH HOH . N 5 HOH A 136 636 434 HOH HOH . N 5 HOH A 137 637 599 HOH HOH . N 5 HOH A 138 638 409 HOH HOH . N 5 HOH A 139 639 584 HOH HOH . N 5 HOH A 140 640 541 HOH HOH . N 5 HOH A 141 641 487 HOH HOH . N 5 HOH A 142 642 455 HOH HOH . N 5 HOH A 143 643 506 HOH HOH . N 5 HOH A 144 644 424 HOH HOH . N 5 HOH A 145 645 458 HOH HOH . N 5 HOH A 146 646 498 HOH HOH . N 5 HOH A 147 647 449 HOH HOH . N 5 HOH A 148 648 475 HOH HOH . N 5 HOH A 149 649 610 HOH HOH . N 5 HOH A 150 650 426 HOH HOH . N 5 HOH A 151 651 432 HOH HOH . N 5 HOH A 152 652 500 HOH HOH . N 5 HOH A 153 653 518 HOH HOH . N 5 HOH A 154 654 483 HOH HOH . N 5 HOH A 155 655 588 HOH HOH . N 5 HOH A 156 656 585 HOH HOH . N 5 HOH A 157 657 576 HOH HOH . N 5 HOH A 158 658 437 HOH HOH . N 5 HOH A 159 659 578 HOH HOH . N 5 HOH A 160 660 540 HOH HOH . N 5 HOH A 161 661 567 HOH HOH . N 5 HOH A 162 662 463 HOH HOH . N 5 HOH A 163 663 469 HOH HOH . N 5 HOH A 164 664 464 HOH HOH . N 5 HOH A 165 665 574 HOH HOH . N 5 HOH A 166 666 613 HOH HOH . N 5 HOH A 167 667 556 HOH HOH . N 5 HOH A 168 668 429 HOH HOH . N 5 HOH A 169 669 467 HOH HOH . N 5 HOH A 170 670 420 HOH HOH . N 5 HOH A 171 671 438 HOH HOH . N 5 HOH A 172 672 417 HOH HOH . N 5 HOH A 173 673 587 HOH HOH . N 5 HOH A 174 674 416 HOH HOH . N 5 HOH A 175 675 468 HOH HOH . N 5 HOH A 176 676 456 HOH HOH . N 5 HOH A 177 677 431 HOH HOH . N 5 HOH A 178 678 451 HOH HOH . N 5 HOH A 179 679 444 HOH HOH . N 5 HOH A 180 680 586 HOH HOH . N 5 HOH A 181 681 595 HOH HOH . N 5 HOH A 182 682 442 HOH HOH . N 5 HOH A 183 683 453 HOH HOH . N 5 HOH A 184 684 423 HOH HOH . N 5 HOH A 185 685 470 HOH HOH . N 5 HOH A 186 686 433 HOH HOH . N 5 HOH A 187 687 435 HOH HOH . N 5 HOH A 188 688 553 HOH HOH . N 5 HOH A 189 689 611 HOH HOH . N 5 HOH A 190 690 441 HOH HOH . N 5 HOH A 191 691 448 HOH HOH . N 5 HOH A 192 692 443 HOH HOH . N 5 HOH A 193 693 593 HOH HOH . N 5 HOH A 194 694 562 HOH HOH . N 5 HOH A 195 695 439 HOH HOH . N 5 HOH A 196 696 462 HOH HOH . N 5 HOH A 197 697 577 HOH HOH . N 5 HOH A 198 698 454 HOH HOH . N 5 HOH A 199 699 427 HOH HOH . N 5 HOH A 200 700 450 HOH HOH . N 5 HOH A 201 701 474 HOH HOH . N 5 HOH A 202 702 414 HOH HOH . N 5 HOH A 203 703 445 HOH HOH . N 5 HOH A 204 704 592 HOH HOH . N 5 HOH A 205 705 582 HOH HOH . N 5 HOH A 206 706 460 HOH HOH . N 5 HOH A 207 707 622 HOH HOH . N 5 HOH A 208 708 466 HOH HOH . N 5 HOH A 209 709 583 HOH HOH . N 5 HOH A 210 710 526 HOH HOH . N 5 HOH A 211 711 457 HOH HOH . N 5 HOH A 212 712 625 HOH HOH . N 5 HOH A 213 713 571 HOH HOH . N 5 HOH A 214 714 534 HOH HOH . N 5 HOH A 215 715 436 HOH HOH . N 5 HOH A 216 716 425 HOH HOH . N 5 HOH A 217 717 594 HOH HOH . N 5 HOH A 218 718 572 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 4 -28.671 32.023 11.567 1 62.96 ? S SO4 407 A 1 HETATM 2 O O1 SO4 . . . H 4 -27.426 32.235 10.79 1 62.61 ? O1 SO4 407 A 1 HETATM 3 O O2 SO4 . . . H 4 -29.825 32.583 10.8 1 66.21 ? O2 SO4 407 A 1 HETATM 4 O O3 SO4 . . . H 4 -28.906 30.574 11.767 1 58.51 ? O3 SO4 407 A 1 HETATM 5 O O4 SO4 . . . H 4 -28.538 32.679 12.898 1 61.82 ? O4 SO4 407 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #