data_5EE5
#
_model_server_result.job_id            iPj8DPwOBalDhLonp3g37Q 
_model_server_result.datetime_utc      '2024-11-26 03:25:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ee5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    5EE5 
#
_exptl.entry_id    5EE5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.98 
_cell.angle_gamma         90 
_cell.entry_id            5EE5 
_cell.length_a            84.166 
_cell.length_b            50.727 
_cell.length_c            103.837 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EE5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 178 A ALA 194 1_555 A N ALY 179 A ALY 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale2 A C ALY 179 A ALY 195 1_555 A N ALA 180 A ALA 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
metalc ? metalc1 A OE2 GLU 50 A GLU 47 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc2 F NA NA . A NA 304 1_555 FA O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc3 B OG1 THR 21 B THR 31 1_555 Q MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc4 B OG1 THR 21 B THR 31 1_555 T MG MG . B MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc5 B OG1 THR 38 B THR 48 1_555 Q MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc6 B OG1 THR 38 B THR 48 1_555 T MG MG . B MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc7 B O LEU 51 B LEU 61 1_555 S MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc8 B OD2 ASP 83 B ASP 93 1_555 R MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc9 B O CYS 85 B CYS 95 1_555 AA NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? 
metalc ? metalc10 B OD2 ASP 86 B ASP 96 1_555 R MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc11 B OD2 ASP 140 B ASP 150 1_555 V NA NA . B NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc12 B OE2 GLU 161 B GLU 171 1_555 BA NA NA . B NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc13 P O1G GTP . B GTP 201 1_555 Q MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc14 P O1B GTP . B GTP 201 1_555 Q MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc15 P O1G GTP . B GTP 201 1_555 T MG MG . B MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc16 P O1B GTP . B GTP 201 1_555 T MG MG . B MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc17 P O2A GTP . B GTP 201 1_555 T MG MG . B MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5EE5 
_atom_sites.fract_transf_matrix[1][1]    0.011881 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004795 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019713 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010385 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NA A 1 301 13 NA NA . 
D 3 NA A 1 302 15 NA NA . 
E 3 NA A 1 303 17 NA NA . 
F 3 NA A 1 304 21 NA NA . 
G 3 NA A 1 305 23 NA NA . 
H 3 NA A 1 306 25 NA NA . 
I 4 GOL A 1 307 3 GOL GOL . 
J 5 CL A 1 308 1 CL CL . 
K 5 CL A 1 309 2 CL CL . 
L 5 CL A 1 310 3 CL CL . 
M 5 CL A 1 311 4 CL CL . 
N 5 CL A 1 312 5 CL CL . 
O 5 CL A 1 313 6 CL CL . 
P 6 GTP B 1 201 1 GTP GTP . 
Q 7 MG B 1 202 1 MG MG . 
R 7 MG B 1 203 2 MG MG . 
S 7 MG B 1 204 3 MG MG . 
T 7 MG B 1 205 4 MG MG . 
U 3 NA B 1 206 9 NA NA . 
V 3 NA B 1 207 10 NA NA . 
W 3 NA B 1 208 12 NA NA . 
X 3 NA B 1 209 16 NA NA . 
Y 3 NA B 1 210 18 NA NA . 
Z 3 NA B 1 211 19 NA NA . 
AA 3 NA B 1 212 20 NA NA . 
BA 3 NA B 1 213 24 NA NA . 
CA 4 GOL B 1 214 1 GOL GOL . 
DA 5 CL B 1 215 7 CL CL . 
EA 8 ACT B 1 216 1 ACT ACT . 
FA 9 HOH A 1 401 104 HOH HOH . 
FA 9 HOH A 2 402 32 HOH HOH . 
FA 9 HOH A 3 403 62 HOH HOH . 
FA 9 HOH A 4 404 105 HOH HOH . 
FA 9 HOH A 5 405 122 HOH HOH . 
FA 9 HOH A 6 406 17 HOH HOH . 
FA 9 HOH A 7 407 29 HOH HOH . 
FA 9 HOH A 8 408 125 HOH HOH . 
FA 9 HOH A 9 409 76 HOH HOH . 
FA 9 HOH A 10 410 121 HOH HOH . 
FA 9 HOH A 11 411 124 HOH HOH . 
FA 9 HOH A 12 412 60 HOH HOH . 
FA 9 HOH A 13 413 85 HOH HOH . 
FA 9 HOH A 14 414 86 HOH HOH . 
FA 9 HOH A 15 415 50 HOH HOH . 
FA 9 HOH A 16 416 73 HOH HOH . 
FA 9 HOH A 17 417 95 HOH HOH . 
FA 9 HOH A 18 418 103 HOH HOH . 
FA 9 HOH A 19 419 97 HOH HOH . 
FA 9 HOH A 20 420 63 HOH HOH . 
FA 9 HOH A 21 421 6 HOH HOH . 
GA 9 HOH B 1 301 114 HOH HOH . 
GA 9 HOH B 2 302 31 HOH HOH . 
GA 9 HOH B 3 303 15 HOH HOH . 
GA 9 HOH B 4 304 40 HOH HOH . 
GA 9 HOH B 5 305 26 HOH HOH . 
GA 9 HOH B 6 306 56 HOH HOH . 
GA 9 HOH B 7 307 49 HOH HOH . 
GA 9 HOH B 8 308 111 HOH HOH . 
GA 9 HOH B 9 309 110 HOH HOH . 
GA 9 HOH B 10 310 113 HOH HOH . 
GA 9 HOH B 11 311 117 HOH HOH . 
GA 9 HOH B 12 312 21 HOH HOH . 
GA 9 HOH B 13 313 112 HOH HOH . 
GA 9 HOH B 14 314 27 HOH HOH . 
GA 9 HOH B 15 315 33 HOH HOH . 
GA 9 HOH B 16 316 100 HOH HOH . 
GA 9 HOH B 17 317 65 HOH HOH . 
GA 9 HOH B 18 318 96 HOH HOH . 
GA 9 HOH B 19 319 123 HOH HOH . 
GA 9 HOH B 20 320 116 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               37.701 
_atom_site.Cartn_y               -18.588 
_atom_site.Cartn_z               -17.207 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        91.69 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#